cluster # 7390

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Schistosoma mansoni
cluster # 7390 cluster # 7390 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7390#0 length = 656 sequences # 1
consensus_7390#1 length = 395 sequences # 2

consensus_7390#2 length = 368 sequences # 1
consensus_7390#3 length = 217 sequences # 1

consensusID : consensus_7390#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence

                              [TAGTTTCAGTCCAAATGGTGATTATTTATGTACTGGTGATATGGCTGGAAATATTCGTATATGGTTAAGACCATTAATAGAAGAAAATTCAAAAGAATGGAAATTATTAAGAACAGAAACTGTCAATGATTTACTATGGATTAAATGGTGGGTATCACCTTCAAATGCTGTACGAAATATGAACAATGAAGTTTCAAAGCCTGCTTTACTATTAGCTGGTGATGAACATAGTTATGTTAATTACTGGGCTATCTTGATCAAGCTGCTTTAGATGGTCTAATTCTACCAAGTTCTACAAATACTAAAAATCCAAAATTAGCCGTTCTTCATCGAAACGGTGATCTACGTATATGGGATATAAAAACAATAACATTAATTGGTTCAATTAAATTATTCGATAAAAAATATTCTTCATTATCTAATCAATATGGTAACCATTTAGAAGTTTATCAAATTAATTCACCGCAATCATTTAATGACCAATTATCTAATTCTAATCATGATTTATTATTAATTGCTGGTAATGGATTTATATGTCCGGTTTCTATTAAATTTGATGAAGAATTACATTTTAAGGTTTTAGATATCATTAAAACAGGCGATGATGGATCAGTTGAAGCATTAAACTGTTCTTGGACCATNCATTGTTTGCTTTT]

[+] EMBL CD162712             [TAGTTTCAGTCCAAATGGTGATTATTTATGTACTGGTGATATGGCTGGAAATATTCGTATATGGTTAAGACCATTAATAGAAGAAAATTCAAAAGAATGGAAATTATTAAGAACAGAAACTGTCAATGATTTACTATGGATTAAATGGTGGGTATCACCTTCAAATGCTGTACGAAATATGAACAATGAAGTTTCAAAGCCTGCTTTACTATTAGCTGGTGATGAACATAGTTATGTTAATTACTGGGCTATCTTGATCAAGCTGCTTTAGATGGTCTAATTCTACCAAGTTCTACAAATACTAAAAATCCAAAATTAGCCGTTCTTCATCGAAACGGTGATCTACGTATATGGGATATAAAAACAATAACATTAATTGGTTCAATTAAATTATTCGATAAAAAATATTCTTCATTATCTAATCAATATGGTAACCATTTAGAAGTTTATCAAATTAATTCACCGCAATCATTTAATGACCAATTATCTAATTCTAATCATGATTTATTATTAATTGCTGGTAATGGATTTATATGTCCGGTTTCTATTAAATTTGATGAAGAATTACATTTTAAGGTTTTAGATATCATTAAAACAGGCGATGATGGATCAGTTGAAGCATTAAACTGTTCTTGGACCATNCATTGTTTGCTTTT]




>consensus_7390#0
TAGTTTCAGTCCAAATGGTGATTATTTATGTACTGGTGATATGGCTGGAAATATTCGTAT
ATGGTTAAGACCATTAATAGAAGAAAATTCAAAAGAATGGAAATTATTAAGAACAGAAAC
TGTCAATGATTTACTATGGATTAAATGGTGGGTATCACCTTCAAATGCTGTACGAAATAT
GAACAATGAAGTTTCAAAGCCTGCTTTACTATTAGCTGGTGATGAACATAGTTATGTTAA
TTACTGGGCTATCTTGATCAAGCTGCTTTAGATGGTCTAATTCTACCAAGTTCTACAAAT
ACTAAAAATCCAAAATTAGCCGTTCTTCATCGAAACGGTGATCTACGTATATGGGATATA
AAAACAATAACATTAATTGGTTCAATTAAATTATTCGATAAAAAATATTCTTCATTATCT
AATCAATATGGTAACCATTTAGAAGTTTATCAAATTAATTCACCGCAATCATTTAATGAC
CAATTATCTAATTCTAATCATGATTTATTATTAATTGCTGGTAATGGATTTATATGTCCG
GTTTCTATTAAATTTGATGAAGAATTACATTTTAAGGTTTTAGATATCATTAAAACAGGC
GATGATGGATCAGTTGAAGCATTAAACTGTTCTTGGACCATNCATTGTTTGCTTTT

consensusID : consensus_7390#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 395
fasta sequence

                              [CATAGTGTCCACGACCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTGCAAACATAAAAAACTAAGCGTGCGCAACTGATCGTTAAGCTATGAGAAAATTCTAAGTGTCACATGACTAATAACTTTAATTTACCGTCAAAAATGTGTTTACAAAACCCCAAAACATAACTACACTTACCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTC]

[+] EMBL CD135366             [CATAGTGTCCACGACCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTGCAAACATAAAAAACTAAGCGTGCGCAACTGATCGTTAAGCTATGAGAAAATTCTAAGTGTCACATGACTAATAACTTTAATTTACCGTCAAAAATGTGTTTACAAAACCCCAAAACATAACTACACTTACCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGAC                                                                ]
[+] EMBL CD144441             [                                                            AACAGCCGTCTGCAAACATAAAAAACTAAGCGTGCGCAACTGATCGTTAAGCTATGAGAAAATTCTAAGTGTCACATGACTAATAACTTTAATTTACCGTCAAAAATGTGTTTACAAAACCCCAAAACATAACTACACTTACCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTC]




>consensus_7390#1
CATAGTGTCCACGACCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGA
AACAGCCGTCTGCAAACATAAAAAACTAAGCGTGCGCAACTGATCGTTAAGCTATGAGAA
AATTCTAAGTGTCACATGACTAATAACTTTAATTTACCGTCAAAAATGTGTTTACAAAAC
CCCAAAACATAACTACACTTACCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCA
CCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCA
GCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATC
TTAAGAATACACTAACAGACCTTACACCCTGACTC

consensusID : consensus_7390#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence

                              [AGATTGAGGTGACGTTTGATATAGATGCGAACGGTATTCTGAACGTATCTGCTGTTGACAAGGGTACTGGGAAGCAGAACAAGATAACGATCACAAATGACAAGGGTCGTTTGTCGAAAGAGGAGATTGAGCGGATGGTAGCCGATGCGGACAAGTACAATGGCATGTGGATCAGGTATCCCACCTGCTCCTCGTGGTACTCCTCAGATTGAGGTGACGTTTGATATAGATGCGAACGGTATTCTGAACGTATCTGCTGTTGACAAGGGTACTGGGAAGCAGAACAAGATAACGATCACAAATGACAAGGGTCGTTTGTCGAAAGAGGAGATTGAGCGGATGGTAGCCGATGCGGACAAGTACAATGG]

[+] EMBL CD150221             [AGATTGAGGTGACGTTTGATATAGATGCGAACGGTATTCTGAACGTATCTGCTGTTGACAAGGGTACTGGGAAGCAGAACAAGATAACGATCACAAATGACAAGGGTCGTTTGTCGAAAGAGGAGATTGAGCGGATGGTAGCCGATGCGGACAAGTACAATGGCATGTGGATCAGGTATCCCACCTGCTCCTCGTGGTACTCCTCAGATTGAGGTGACGTTTGATATAGATGCGAACGGTATTCTGAACGTATCTGCTGTTGACAAGGGTACTGGGAAGCAGAACAAGATAACGATCACAAATGACAAGGGTCGTTTGTCGAAAGAGGAGATTGAGCGGATGGTAGCCGATGCGGACAAGTACAATGG]




>consensus_7390#2
AGATTGAGGTGACGTTTGATATAGATGCGAACGGTATTCTGAACGTATCTGCTGTTGACA
AGGGTACTGGGAAGCAGAACAAGATAACGATCACAAATGACAAGGGTCGTTTGTCGAAAG
AGGAGATTGAGCGGATGGTAGCCGATGCGGACAAGTACAATGGCATGTGGATCAGGTATC
CCACCTGCTCCTCGTGGTACTCCTCAGATTGAGGTGACGTTTGATATAGATGCGAACGGT
ATTCTGAACGTATCTGCTGTTGACAAGGGTACTGGGAAGCAGAACAAGATAACGATCACA
AATGACAAGGGTCGTTTGTCGAAAGAGGAGATTGAGCGGATGGTAGCCGATGCGGACAAG
TACAATGG

consensusID : consensus_7390#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 217
fasta sequence

                              [CGCATCGGCTACCATCCGCTCAATCTCCTCTTTCGACAAACAAGCCTTGTCATTTGTGATCGTTATCTTGTTCTGCTTCCCAGTACCCTTGTCAACAGCAGATACGTTCAGAATACCGTTCGCATCTATATCAAACGTCACCTCAATCTGAGGAGTACCACAATGGCACGTGGATCACAATGGCACGTGGATCACAATGGCACGTGGATCACAATGG]

[+] EMBL CD160255             [CGCATCGGCTACCATCCGCTCAATCTCCTCTTTCGACAAACAAGCCTTGTCATTTGTGATCGTTATCTTGTTCTGCTTCCCAGTACCCTTGTCAACAGCAGATACGTTCAGAATACCGTTCGCATCTATATCAAACGTCACCTCAATCTGAGGAGTACCACAATGGCACGTGGATCACAATGGCACGTGGATCACAATGGCACGTGGATCACAATGG]




>consensus_7390#3
CGCATCGGCTACCATCCGCTCAATCTCCTCTTTCGACAAACAAGCCTTGTCATTTGTGAT
CGTTATCTTGTTCTGCTTCCCAGTACCCTTGTCAACAGCAGATACGTTCAGAATACCGTT
CGCATCTATATCAAACGTCACCTCAATCTGAGGAGTACCACAATGGCACGTGGATCACAA
TGGCACGTGGATCACAATGGCACGTGGATCACAATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7390#0      TAGTTTCAGTCCAAATGGTGATTATTTATGTACTGGTGATATGGCTGGAAATATTCGTAT 60
consensus_7390#3      ------------------------------------------------------------
consensus_7390#1      ------------------------------------------------------------
consensus_7390#2      ------------------------------------------------------------
                                                                                  

consensus_7390#0      ATGGTTAAGACCATTAATAGAAGAAAATTCAAAAGAATGGAAATTATTAAGAACAGAAAC 120
consensus_7390#3      ------------------------------------------------------------
consensus_7390#1      ------------------------------------------------------------
consensus_7390#2      ------------------------------------------------------------
                                                                                  

consensus_7390#0      TGTCAATGATTTACTATGGATTAAATGGTGGGTATCACCTTCAAATGCTGTACGAAATAT 180
consensus_7390#3      ------------------------------------------------------------
consensus_7390#1      ------------------------------------------------------------
consensus_7390#2      ------------------------------------------------------------
                                                                                  

consensus_7390#0      GAACAATGAAGTTTCAAAGCCTGCTTTACTATTAGCTGGTGATGAACATAGTTATGTTAA 240
consensus_7390#3      ------------------------------------------------------------
consensus_7390#1      ----------------------------------------------CATAGTGTCCACGA 14
consensus_7390#2      ------------------------------------------------------------
                                                                                  

consensus_7390#0      TTACTGG-GCTATCTTGATCAAGCTGCTTTAGATGGTCTAATTCTACCAAGT--TCTACA 297
consensus_7390#3      ------------------------------------------------------------
consensus_7390#1      CCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTGCA 74
consensus_7390#2      ------------------------------------------------------------
                                                                                  

consensus_7390#0      AATACTAAAAATCCAAAATTAGCCGTTCTTCATCGAAACGGTGATCTACGTATATGGGAT 357
consensus_7390#3      ------------------------------------------------------------
consensus_7390#1      AACATAAAAAACTAAGCGTGCGCAACTGATCGTT-AAGCTATGAGAAAATTCTAAGTGTC 133
consensus_7390#2      -------AGATTGAGGTGACGTTTGATATAGATGCGAACGGTATTCTGAACGTATCTGCT 53
                                                                                  

consensus_7390#0      ATAAAAACAATAACATTAATTGGTTCAATTAAATTATTCGATAAAAAATATTCTTCATTA 417
consensus_7390#3      ------------------------------------------------------------
consensus_7390#1      ACATGACTAATAACTTTAATTTACCGTCAAAAATGTGTTTACAAAACCCCAAAACATAAC 193
consensus_7390#2      GTTGACAAGGGTACTGGGAAGCAGAACAAGATAACGATCACAAATGACAAGGGTCGTTTG 113
                                                                                  

consensus_7390#0      TCTAATCAATATGGTAACCATTTAGAAGTTTATCAAATTAATTCACCGCAATCATTTAAT 477
consensus_7390#3      -CGCATCGGC-TACCATCCGCTCAATCTCCTCTTTCGACAAACAAGCCTTGTCATTTG-T 57
consensus_7390#1      TACACTTACCTCGACGACCA-TCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGT 252
consensus_7390#2      TCGAAAGAGGAGATTGAGCGGATGGTAGCCGATGCGGACAAGTA--CAATGGCATGTG-- 169
                                        *                           *     *   *   

consensus_7390#0      GACCAATTATCTAATT--CTAATCATGATTTATTATTAATTGC--TGGTAATGGATTTAT 533
consensus_7390#3      GATCG-TTATCTTGTT--CTGCTT----CCCAGTACCC-TTGT--CAACAGCAGATACGT 107
consensus_7390#1      CCGCCGCGATAACCTC--CGCCTCCACCTCTACCACCACCTCT--TGG-GGCAGCTTGGC 307
consensus_7390#2      GATCAGGTATCCCACCTGCTCCTCGTGGTACTCCTCAGATTGAGGTGACGTTTGATATAG 229
                         *    **        *   *                 *            * *    

consensus_7390#0      ATGT---CCGGTTTCTATTAAATTTGA----TGAAGAATTACATTTTAAGGTTTTAGATA 586
consensus_7390#3      ---T---CAGAATACCGTTCGCATCTA----TATCAAACGTCACCTCAATCTGAGGAGTA 157
consensus_7390#1      A-AT---CGCGAGCATAATGACCGGGA----CGTCCACATTTGAAACAGT-CGTCCGACA 358
consensus_7390#2      ATGCGAACGGTATTCTGAACGTATCTGCTGTTGACAAGGGTACTGGGAAGCAGAACAAGA 289
                             *                            *          *           *

consensus_7390#0      TCATTAAAACAGGCGATGATGGATCAGTTGAAGCATTAAACTGTTCTTGGACCATNCATT 646
consensus_7390#3      CCACAATGGCACGTGGATCACAATGGCACGTGGATCACAATGGCACGTGGATCACA-ATG 216
consensus_7390#1      TCTTAAGAATACACTAACAGACCTTACACCCTGACTC----------------------- 395
consensus_7390#2      TAACGATCACAAATGACAAGGGTCGTTTGTCGAAAGAGGAGATTGAGCGGATGGTAGCCG 349
                           *    *                                                 

consensus_7390#0      GTTTGCTTTT--------- 656
consensus_7390#3      G------------------ 217
consensus_7390#1      -------------------
consensus_7390#2      ATGCGGACAAGTACAATGG 368