These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7392#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 506 fasta sequence [AAGACGAAGGGTTGATTTCGTTTATTATTGGACCAAACACAGATATCCAAAATTACAAGCACGTTAAGCAATCATGAAAGAGTAGTGCCGTAAAGCAGGCGAGTGAGAGTCGAATGAGCGAGTACAGTGCAGTGCAGTGAACAGGATTAAGATGTACAATAGTGGAGGCGAGTTTGTACAGGCAACACAATCTTTTGTAGACTTGATTTCATTATATTTCAGCATCGTACTATTTGGACATACTATTTGGCTCACGTTTGTCACTTGTCTACGTCATTCTATGCGTACAATAATTGAAAGATATCATTAAATCCTTGTTCAATAATTGCTATGTGTCCCTGCTACACTCAAAGTTCACAGTTATAAGCTAGTGCAATACTAAGTCAATGATACTTTATTCCCATTCTGCTTAAATGAATATTTGAACGATAATGTATACTGGCAATAATCTGATTGGTATTTGCTTCTTAAGGGTCAAATAAGAAAAGTAATCCTAACATTCCCTA] [+] EMBL CD089864 [AAGACGAAGGGTTGATTTCGTTTATTATTGGACCAAACACAGATATCCAAAATTACAAGCACGTTAAGCAATCATGAAAGAGTAGTGCCGTAAAGCAGGCGAGTGAGAGTCGAATGAGCGAGTACAGTGCAGTGCAGTGAACAGGATTAAGATGTACAATAGTGGAGGCGAGTTTGTACAGGCAACACAATCTTTTGTAGACTTGATTTCATTATATTTCAGCATCGTACTATTTGGACATACTATTTGGCTCACGTTTGTCACTTGTCTACGTCATTCTATGCGTACAATAATTGAAAGATATCATTAAATCCTTGTTCAATAATTGCTATGTGTCCCTGCTACACTCAAAGTTCACAGTTATAAGCTAGTGCAATACTAAGTCAATGATACTTTATTCCCATTCTGCTTAAATGAATATTTGAACGATAATGTATACTGGCAATAATCTGATTGGTATTTGCTTCTTAAGGGTCAAATAAGAAAAGTAATCCTAACA ] [+] EMBL CD089781 [AAGACGAAGGGTTGATTTCGTTTATTATTGGACCAAACACAGATAT CAAAATTACAAGCACGTTAAGCAATCATGAAAGAGTAGTGCCGTAAAGCAGGCGAGTGAGAGTCGAATGAGCGAGTACAGTGCAGTGCAGTGAACAGGATTAAGATGTACAATAGTGGAGGCGAGTTTGTACAGGCAACACAATCTTTTGTAGACTTGATTTCATTATATTTCAGCATCGTACTATTTGGACATACTATTTGGCTCACGTTTGTCACTTGTCTACGTCATTCTATGCGTACAATAATTGAAAGATATCATTAAATCCTTGTTCAATAATTGCTATGTGTCCCTGCTACACTCAAAGTTCACAGTTATAAGCTAGTGCAATACTAAGTCAATGATACTTTATTCCCATTCTGCTTAAATGAATATTTGAACGATAATGTATACTGGCAATAATCTGATTGGTATTTGCTTCTTAAGGGTCAca ] [+] EMBL CD089743 [AAGACGAAGGGTTGATTTCGTTTATTATTGGACCAAACACAGATATCCAAAATTACAAGCACGCTAAGCAATCATGAAAGAGTAGTGCCGTAAAGCAGGCGAGTGAGAGTCGAATGAGCGAGTACAGTGCAGTGCAGTGAACAGGATTAAGATGTACAATAGTGGAGGCGAGTTTGTACAGGCAACACAATCTTTTGTAGACTTGATTTCATTATATTTCAGCATCGTACTATTTGGACATACTATTTGGCTCACGTTTGTCACTTGTCTACGTCATTCTATGCGTACAATAATTGAAAGATATCATTAAATCCTTGTTCAATAATTGCTATGTGTCCCTGCTACACTCAAAGTTCACAGTTATAAGCTAGTGCAATACTAAGTCAATGATACTTTATTCCCATTCTGCTTAAATGAATATTTGAACGATAATGTATACTGGCAATAATCTGATTGGTATTTGCTTCTTAAGGGTC ] [-] EMBL CD089700 [ gACAAGCACGTTAAGCAATCATGAAAGAGTAGTGCCGTAAAGCAGGCGAGTGAGAGTCGAATGAGCGAGTACAGGGCAGTGCAGTGAACAGGATTAAGATGTACAATAGTGGAGGCGAGTTTGTACAGGCAACACAATCTTTTGTAGACTTGATTTCATTATATTTCAGCATCGTACTATTTGGACATACTATTTGGCTCACGTTTGTCACTTGTCTACGTCATTCTATGCGTACAATAATTGAAAGATATCATTAAATCCTTGTTCAATAATTGCTATGTGTCCCTGCTACACTCAAAGTTCACAGTTATAAGCTAGTGCAATACTAAGTCAATGATACTTTATTCCCATTCTGCTTAAATGAATATTTGAACGATAATGTATACTGGCAATAATCTGATTGGTATTTGCTTCTTAAGGGTCAAATAAGAAAAGTAATCCTAACATTCCCTA] consensusID : consensus_7392#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [CTCACTGACTCGATCACTCACTCAACTCGCACGGTCACTCGCTTGCTTTACGGCACTAATCCTTCATGCTTGCTTAACGTGCCTGTAATTTTGGATATCTGTGTGTGGTCCAATAATAAACGCAATCAACACTTCGTATTCGCCTTCTGATTGATACACCGTTGGAGTGTTATCAAGTAACGGTTATCAGAACGAACAATTTACGAAGTTTAAGGATTATATCGAATATCGACTCCTACAAATTAAATACGACCAGACCCCTTG] [+] EMBL CD128828 [CTCACTGACTCGATCACTCACTCAACTCGCACGGTCACTCGCTTGCTTTACGGCACTAATCCTTCATGCTTGCTTAACGTGCCTGTAATTTTGGATATCTGTGTGTGGTCCAATAATAAACGCAATCAACACTTCGTATTCGCCTTCTGATTGATACACCGTTGGAGTGTTATCAAGTAACGGTTATCAGAACGAACAATTTACGAAGTTTAAGGATTATATCGAATATCGACTCCTACAAATTAAATACGACCAGACCCCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7392#0 AAGACGAAGGGTTGATTTCGTTTATTATTGGACCAAACACAGATATCCAAAATTACAAGC 60 consensus_7392#1 ------------------------------------------------------------ consensus_7392#0 ACGTTAAGCAATCATGAAAGAGTAGTGCCGTAAAGCAGGCGAGTGAGAGTCGAATGAGCG 120 consensus_7392#1 ------------------------------------------------------------ consensus_7392#0 AGTACAGTGCAGTGCAGTGAACAGGATTAAGATGTACAATAGTGGAGGCGAGTTTGTACA 180 consensus_7392#1 ------------------------------------------------------------ consensus_7392#0 GGCAACACAATCTTTTGTAGACTTGATTTCATTATATTTCAGCATCGTACTATTTGGACA 240 consensus_7392#1 ---------------------------------------------CTCACTGACTCGATC 15 * *** * ** consensus_7392#0 TACTATTTGGCTCACGTTTGTCACTTGTCTACGTCATTCTATGCGTACAATAATTGAAAG 300 consensus_7392#1 ACTCACTCAACTCGCACG-GTCACTCGCTTGC-----TTTACG-GCACTAATCCTTCATG 68 * * *** * ****** * * * * ** * * ** * * * * consensus_7392#0 ATATCATTAAATCCTTGTTCAATAATTGCTATGTGTCCCTGCTACACTCAAAGTTCACAG 360 consensus_7392#1 CTTGCTTAACGTGCCTGT--AATTTTGGATATCTGTGTGTGGTCCAAT-AATAAACGCAA 125 * * * * * * *** *** * * *** *** ** * ** * ** * ** consensus_7392#0 TTATAAGCTAGTGCAATACTAAGTCAATGATACTTTATTCCCATTCTGCTTA--AATGAA 418 consensus_7392#1 TCAACACTTCGTATT-CGCCTTCTGATTGATACACCGTTGGAGTGTTATCAAGTAACGGT 184 * * * * ** * * * ****** ** * * * ** * consensus_7392#0 TATTTGAACGA-TAATGTATACTGGC-AATAATCTGATTGGTATTTGCTTCTTAAGGGTC 476 consensus_7392#1 TATCAGAACGAACAATTTACGAAGTTTAAGGATTATATCGAATATCGACTCCTACAAATT 244 *** ****** *** ** * ** ** ** * * * ** ** * consensus_7392#0 AAATAAGAAAAGTAATCCTAACATTCCCTA 506 consensus_7392#1 AAATACGACCAGACCCCTTG---------- 264 ***** ** ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||