These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7405#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 739 fasta sequence [AAAATAGGTGTACGTATACATGCTAAAAACGAAATTAAAATCAATAAGGATAATGATAAATCTAAGAACTCAAAATGCAGAAATCATTTGTTTTTAAGCGAACTACATATGAACGTAGTAAGCAGTAAATAAGAATAATCACAAGAGACAAACGCAACTACAGTGCGATTCAAAGAGACAGAGAGAGAAGCAGGAGGCTTAAGGAGTTAGTCACAGTATCCAATCAGAAGCGAGAACATATAACGCTGATAAGCGTGTACGTGTGTAGATGTAAATCAATTTCAGAAAGTTGACAAATACCAATCTGTATATAATAATAAAATTATTCAGCATCAACACTGTTCTATTTCAGCTGAATTTTCTGTATCAACCACACGTTGCATTAACTTGATCAACGTTTCCAATCCATGCCGAAAGCCATCAGTTAGTTCACAACTCCAACAATCCTTACTACAACCACCACTAATATCATTGTCATTCGTAGATAATTTAGCTTTCCAACGGACAAAATCAATTAGATAAACCTCTGTATGTGCAGTATTATGACCATCACTGTCACTGCTTATGTTACTAATATTGTCTCCATTCGAAGAAATAGGAATATCGGAGTTGGTAGTATCGTTTGAACTATTGACTGACTGATTGTCAGCTGTTATTGTGGTAGATGATGTGGAACAGTGATCATTATTACTGTTGTCAATCGTCAATGACTCATGAATCAATAAAAGTGAGGAACGAC] [+] EMBL CD113086 [AAAATAGGTGTACGTATACATGCTAAAAACGAAATTAAAATCAATAAGGATAATGATAAATCTAAGAACTCAAAATGCAGAAATCATTTGTTTTTAAGCGAACTACATATGAACGTAGTAAGCAGTAAATAAGAATAATCACAAGAGACAAACGCAACTACAGTGCGATTCAAAGAGACAGAGAGAGAAGCAGGAGGCTTAAGGAGTTAGTCACAGTATCCAATCAGAAGCGAGAACATATAACGCTGATAAGCGTGTACGTGTGTAGATGTAAATCAATTTC ] [+] EMBL CD114864 [ GGAGGCTTAAGGAGTTAGTCACAGTATCCAATCAGAAGCGAGAACATATAACGCTGATAAGCGTGTACGTGTGTAGATGTAAATCAATTTCAGAAAGTTGACAATTACCAATCTGTATATAATAATAAAATTATTCAGCATCAACACTGTTCTATTTCAGCTGAATTTTCTGTATCAACCACACGTTGCATTAACTTGATCAACGTTTCCAATCCATGCCGAAAGCCATCAGTTAGTTCACAACTCCAACAATCCTTACTACAACCACCACTAATATCATTGTCATTCGTAGATAATTTAGCTTTCCAACGGACAAAATCAATTAGATAAACCTCTGTATGTGCAGTATTATGACCATCACTGTCACTGCTTATGTTACTAATATTGTCTCCATTCGAAGAAATAGGAATATCGGAGTTGGTAGTATCGTTTGAACTATTGACTGACTGATTGTCAGCTGTTATTGTGGTAGATGATGTGGAACAGTGATCATTATTACTGTTGTCAATCGTCAATGACTCATGAATCAATAAAAGTGAGGAACGAC] [+] EMBL CD115050 [ GGAGGCTTAAGGAGCTAGTCACAGTATCCAATCAGAAGCGAGAACATATAACGCTGATAAGCGTGTACGTGTGTAGATGTAAATCAATTTCAGAAAGTTGACAAATACCAATCTGTATATAATAATAAAATTATTCAGCATCAACACTGTTCTATTTCAGCTGAATTTTCTGTATCAACCACACGTTGCATTAACTTGATCAACGTTTCCAATCCATGCCGAAAGCCATCAGTTAGTTCACAACTCCAACAATCCTTACTACAACCACCACTAATATCATTGTCATTCGTAGATAATTTAGCTTTCCAACGGACAAAATCAATTAGATAAACCTCTGTATGTGCAGTATTATGACCATCACTGTCACTGCTTATGTTACTAATATTGTTTCCATTCGAAGAAATAGGAATATCGGAGTTGGTAGTATCGTTTGAACTACTGACTGACTGATTGTCAGCTGTTATTGTGGTAGATGATGTGGAACAGTGATCATTAT ] [-] EMBL CD152902 [ GGCTTGAGGAGTTAGTCACAGTATCCAATCAGAAGCGAGAACATATAACGCTGATAAGCGTGTACGTGTGTAGATGTAAATCAATTTCAGAAAGTTGACAAATACCAATCTGTATATAATAATAAGGGTATTCAGCATCAACACTGTTCTATTTCAGCTGAATTTTCTGTATCAACAACACGTTGCATTAAAATGATCAACGTTTCCAATTCATGCCGAGAGCCATCAGTTAGTTCACAACTCCAACAATCCTTACTACAACCACCACTAATATCATTGTCATTCGTAGATAATTTAGCTTTCCAACGGACAAAATCAAT ] consensusID : consensus_7405#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [CCGCCTGGCGTTCGCGGGAATTCAATTCCAGACCCCCCACAACAGAGAGAAGCAGGAGGCTTAAGGAGTTAGTCACAGTATCCAATCAGAAGCGAGAACATATAACGCTGATAAGCGTGTACGTGTGTAGATGTAAATCAATTTCAGAAAGTTGACAAATACCAATCTGTATATAATAATAAAATTATTCAGCATCAACACTGTTCTATTTCAGCTAAATTTTCTGTATCAACCACACGTTGCATTAACTTGCTCAACGTTTCCAATCCATGCCGAGAGCCATCAGTTAGTTCACAACTCCAACAATCCTTACTACAACCACCACTAATATCATTGTCATTCGTAGATAATTTAGCTTTCCAACGGACAAAATCAA] [+] EMBL CD152926 [CCGCCTGGCGTTCGCGGGAATTCAATTCCAGACCCCCCACAACAGAGAGAAGCAGGAGGCTTAAGGAGTTAGTCACAGTATCCAATCAGAAGCGAGAACATATAACGCTGATAAGCGTGTACGTGTGTAGATGTAAATCAATTTCAGAAAGTTGACAAATACCAATCTGTATATAATAATAAAATTATTCAGCATCAACACTGTTCTATTTCAGCTAAATTTTCTGTATCAACCACACGTTGCATTAACTTGCTCAACGTTTCCAATCCATGCCGAGAGCCATCAGTTAGTTCACAACTCCAACAATCCTTACTACAACCACCACTAATATCATTGTCATTCGTAGATAATTTAGCTTTCCAACGGACAAAATCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7405#0 AAAATAGGTGTACGTATACATGCTAAAAACGAAATTAAAATCAATAAGGATAATGATAAA 60 consensus_7405#1 ------------------------------------------------------------ consensus_7405#0 TCTAAGAACTCAAAATGCAGAAATCATTTGTTTTTAAGCGAACTACATATGAACGTAGTA 120 consensus_7405#1 ------------------------------------------------------------ consensus_7405#0 AGCAGTAAATAAGAATAATCACAAGAGACAAACGCAACTACAGTGCGATTCAAAGAGACA 180 consensus_7405#1 ------------------CCGCCTGGCGTTCGCGGGAATTCAATTCCAGACCCCCCACAA 42 * * * ** * * ** * * * * * consensus_7405#0 GAGAGAGAAGCAGGAGGCTTAAGGAGTTAGTCACAGTATCCAATCAGAAGCGAGAACATA 240 consensus_7405#1 CAGAGAGAAGCAGGAGGCTTAAGGAGTTAGTCACAGTATCCAATCAGAAGCGAGAACATA 102 *********************************************************** consensus_7405#0 TAACGCTGATAAGCGTGTACGTGTGTAGATGTAAATCAATTTCAGAAAGTTGACAAATAC 300 consensus_7405#1 TAACGCTGATAAGCGTGTACGTGTGTAGATGTAAATCAATTTCAGAAAGTTGACAAATAC 162 ************************************************************ consensus_7405#0 CAATCTGTATATAATAATAAAATTATTCAGCATCAACACTGTTCTATTTCAGCTGAATTT 360 consensus_7405#1 CAATCTGTATATAATAATAAAATTATTCAGCATCAACACTGTTCTATTTCAGCTAAATTT 222 ****************************************************** ***** consensus_7405#0 TCTGTATCAACCACACGTTGCATTAACTTGATCAACGTTTCCAATCCATGCCGAAAGCCA 420 consensus_7405#1 TCTGTATCAACCACACGTTGCATTAACTTGCTCAACGTTTCCAATCCATGCCGAGAGCCA 282 ****************************** *********************** ***** consensus_7405#0 TCAGTTAGTTCACAACTCCAACAATCCTTACTACAACCACCACTAATATCATTGTCATTC 480 consensus_7405#1 TCAGTTAGTTCACAACTCCAACAATCCTTACTACAACCACCACTAATATCATTGTCATTC 342 ************************************************************ consensus_7405#0 GTAGATAATTTAGCTTTCCAACGGACAAAATCAATTAGATAAACCTCTGTATGTGCAGTA 540 consensus_7405#1 GTAGATAATTTAGCTTTCCAACGGACAAAATCAA-------------------------- 376 ********************************** consensus_7405#0 TTATGACCATCACTGTCACTGCTTATGTTACTAATATTGTCTCCATTCGAAGAAATAGGA 600 consensus_7405#1 ------------------------------------------------------------ consensus_7405#0 ATATCGGAGTTGGTAGTATCGTTTGAACTATTGACTGACTGATTGTCAGCTGTTATTGTG 660 consensus_7405#1 ------------------------------------------------------------ consensus_7405#0 GTAGATGATGTGGAACAGTGATCATTATTACTGTTGTCAATCGTCAATGACTCATGAATC 720 consensus_7405#1 ------------------------------------------------------------ consensus_7405#0 AATAAAAGTGAGGAACGAC 739 consensus_7405#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||