cluster # 7407

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Schistosoma mansoni
cluster # 7407 cluster # 7407 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7407#0 length = 972 sequences # 4

consensus_7407#1 length = 348 sequences # 1

consensusID : consensus_7407#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 972
fasta sequence

                              [TCTGGCACGTTCTCCATGAACATTTAACTGAAAGTTTCGATTCTCGTGAGGCTGAAGACGTAGAATTGCCCTCAGCTTTCACCAGTGACAAGGAGATGCAAATCTTGAATATATACAAGAGCTTCTTATGTCGCTATGCAGTGAATTTCAAGGCTTTCTCGGAAATGTACTCCACGAATGAAGAACTTCAAAATATATGTAAAGGTATCGTTGCAAAGTCTCAATATCAGGAGCAACGTATTCAGAATGTACCTGGGATGTTCTATGGTGTCAGCACAGCATTAACACGATACAAAGATCTCATTTATAGGCTTAAAGGAACCATGCTTCCGAGCGACCCAGAATATACAAATGTCACAAAGGCTTGGAATTTCATCAAGGATTTGTTGGATCGTTCGGAACAGGAAATTATTTTACAGGAGAAAATGTCGAATGCTAGAGAAGCACTTGGTAAACTGGATGGTCTTCGTGTAAAGTATACTCAGATCCCGTTACTACATCTAGAAGGGCCTGCAAAGAAACTTCCTAGACGTTCAATACATAGACGACTTTTGGATAGATATTTATTTCTTTTTTCCGAATATTTGGTCATGACTGAATCCCCTAATGCTGTTGGTCGTTATCAAGTTAAGTCAGAGATAGGTCTGGCTGGGATGACATTATGTGAAGTGAAAGATGATGAAGAAATCAATGTTGAACATTGTTTTAGAATTAAAGCGAAAGAGCTATGCGTCGAGGTTGCTTTCTCAAATGATGATGAAAAACAACTTTGGTGGCGTGAACTTCAACAGGCTATTGATTGTGAATGTAACAGACCGAATAGTAATGGTTTCAATGAAAAAAAAGTCAATAATGAGTGCAAATAATTTAGGTGAAGTTGCAGCTCAATGGGTTAAAGATGAATCATCTACAATGTGTACAAATTGTTGTACAGAATTTACTACACTTAATCGACGACATCATTGTCGTGCA]

[+] EMBL CD115579             [TCTGGCACGTTCTCCATGAACATTTAACTGAAAGTTTCGATTCTCGTGAGGCTGAAGACGTAGAATTGCCCTCAGCTTTCACCAGTGACAAGGAGATGCAAATCTTGAATATATACAAGAGCTTCTTATGTCGCTATGCAGTGAATTTCAAGGCTTTCTCGGAAATGTACTCCACGAATGAAGAACTTCAAAATATATGTAAAGGTATCGTTGCAAAGTCTCAATATCAGGAGCAACGTATTCAGAATGTACCTGGGATGTTCTATGGTGTCAGCACAGCATTAACACGATACAAAGATCTCATTTATAGGCTTAAAGGAACCATGCTTCCGAGCGACCCAGAATATACAAATGTCACAAAGGCTTGGAATTTCATCAAGGATTTGTTGGATCGTTCGGAACAGGAAATTATTTTACAGGAGAAAATGTCGAATGCTAGAGAAGCACTTGGTAAACTGGATGGTCTTCGTGTAAAGTATACTCAGATCCCGTTACTACATCTAGAAGGGCCTGCAAAGAAACTTCCTAGACGTTCAATACATAGACGACTTTTGGATAGATATTTATTTCTTTTTTCCGAATATTTGGTCATGACTGAATCCCCTAATGCTGTTGGTCGTTATCAAGTTAAGTCAGAGATAGGTCTGGCTGGG                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD114072             [                                                    TGAAGACGTAGAATTGCCCTCAGCTTTCACCAGTGACAAGGAGATGCAAATCTTGAATATATACAAGAGCTTCTTATGTCGCTATGCAGTGAATTTCAAGGCTTTCTCGGAAATGTACTCCACGAATGAAGAACTTCAAAATATATGTAAAGGTATCGTTGCAAAGTCTCAATATCAGGAGCAACGTATTCAGAATGTACCTGGGATGTTCTATGGTATCAGCACAGCATTAACACGATACAAAGATCTCATTTATAGGCTTAAAGGAACCATGCTTCCGAGCGACCCAGAATATACAAATGTCACAAAGGCTTGGAATTTCATCAAGGATTTGTTGGATCGTTCGGAACAGGAAATTATTTTACAGGAGAAAATGTCGAATGCTAGAGAAGCACTTGGTAAACTGGATGGTCTTCGTGTAAAGTATACTCAGATCCCGTTACTACATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD192334             [                                                                                                                                                                                                                                                                                                                                                                                              TTTGTTGAATCGTTCGGAACAGGAAATTATTTTACAGGAGAAAATGTCGAATGCTAGAGAAGCACTTGGTAAACTGGATGGTCTTCGTGTAAAGTATACTCAGATCCCGTTACTACATCTAGAAGGGCCTGCAAAGAAACTTCCTAGACGTTCAATACATAGACGACTTTTGGATAGATATTTATTTCTTTTTTCCGAATATTTGGTCATGACTGAATCCCCTAATGCTGTCGG                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD147758             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTCCTAGACGTTCAATACATAGACGACTTTTGGATAGATATTTATTTCTTTTTTCCGAATATTTGGTCATGACTGAATCCCCTAATGCTGTTGGTCGTTATCAAGTTAAGTCAGAGATAGGTCTGGCTGGAATGACATTATGTGAAGTGAAAGATGATGAAGAAATCAATGTTGAACATTGTTTTAGAATTAAAGCGAAAGAGCTATGCGTCGAGGTTGCTTTCTCAAATGATGATGAAAAACAACTTTGGTGGCGTGAACTTCAACAGGCTATTGATTGTGAATGTAACAGACCGAATAGTAATGGTTTCAATGAAAAAAAAGTCAATAATGAGTGCAAATAATTTAGGTGAAGTTGCAGCTCAATGGGTTAAAGATGAATCATCTACAATGTGTACAAATTGTTGTACAGAATTTACTACACTTAATCGACGACATCATTGTCGTGCA]




>consensus_7407#0
TCTGGCACGTTCTCCATGAACATTTAACTGAAAGTTTCGATTCTCGTGAGGCTGAAGACG
TAGAATTGCCCTCAGCTTTCACCAGTGACAAGGAGATGCAAATCTTGAATATATACAAGA
GCTTCTTATGTCGCTATGCAGTGAATTTCAAGGCTTTCTCGGAAATGTACTCCACGAATG
AAGAACTTCAAAATATATGTAAAGGTATCGTTGCAAAGTCTCAATATCAGGAGCAACGTA
TTCAGAATGTACCTGGGATGTTCTATGGTGTCAGCACAGCATTAACACGATACAAAGATC
TCATTTATAGGCTTAAAGGAACCATGCTTCCGAGCGACCCAGAATATACAAATGTCACAA
AGGCTTGGAATTTCATCAAGGATTTGTTGGATCGTTCGGAACAGGAAATTATTTTACAGG
AGAAAATGTCGAATGCTAGAGAAGCACTTGGTAAACTGGATGGTCTTCGTGTAAAGTATA
CTCAGATCCCGTTACTACATCTAGAAGGGCCTGCAAAGAAACTTCCTAGACGTTCAATAC
ATAGACGACTTTTGGATAGATATTTATTTCTTTTTTCCGAATATTTGGTCATGACTGAAT
CCCCTAATGCTGTTGGTCGTTATCAAGTTAAGTCAGAGATAGGTCTGGCTGGGATGACAT
TATGTGAAGTGAAAGATGATGAAGAAATCAATGTTGAACATTGTTTTAGAATTAAAGCGA
AAGAGCTATGCGTCGAGGTTGCTTTCTCAAATGATGATGAAAAACAACTTTGGTGGCGTG
AACTTCAACAGGCTATTGATTGTGAATGTAACAGACCGAATAGTAATGGTTTCAATGAAA
AAAAAGTCAATAATGAGTGCAAATAATTTAGGTGAAGTTGCAGCTCAATGGGTTAAAGAT
GAATCATCTACAATGTGTACAAATTGTTGTACAGAATTTACTACACTTAATCGACGACAT
CATTGTCGTGCA

consensusID : consensus_7407#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence

                              [ATAGTTTGGGAAAAATTGAGCGGCAATTATATAGTAAACATTAAATGCAAGAATTGTACTTGAATGCTCTCAGCAATCGCCGTACGAAACAGTGGAATCATTCAAGTTTCAATCGCTCAGATTATTGAAATACAATTTTCACATCGAACATCAGGTGGTTTACATTCATAAATAATAATTAACTAACTTGTTCGTTCATTACGTTTTTCATCTTCTATATAACATTCTAGGCAAAGTCTCAATATCAGGAGCAACGTATTCAGAATGTACCTGGGATGTTCTATGGTGTCAGCACAGCATTAACACGATACAAAGATCTCATTTATAGTAAGCTTCAAATTGTGAAGA]

[+] EMBL CD193593             [ATAGTTTGGGAAAAATTGAGCGGCAATTATATAGTAAACATTAAATGCAAGAATTGTACTTGAATGCTCTCAGCAATCGCCGTACGAAACAGTGGAATCATTCAAGTTTCAATCGCTCAGATTATTGAAATACAATTTTCACATCGAACATCAGGTGGTTTACATTCATAAATAATAATTAACTAACTTGTTCGTTCATTACGTTTTTCATCTTCTATATAACATTCTAGGCAAAGTCTCAATATCAGGAGCAACGTATTCAGAATGTACCTGGGATGTTCTATGGTGTCAGCACAGCATTAACACGATACAAAGATCTCATTTATAGTAAGCTTCAAATTGTGAAGA]




>consensus_7407#1
ATAGTTTGGGAAAAATTGAGCGGCAATTATATAGTAAACATTAAATGCAAGAATTGTACT
TGAATGCTCTCAGCAATCGCCGTACGAAACAGTGGAATCATTCAAGTTTCAATCGCTCAG
ATTATTGAAATACAATTTTCACATCGAACATCAGGTGGTTTACATTCATAAATAATAATT
AACTAACTTGTTCGTTCATTACGTTTTTCATCTTCTATATAACATTCTAGGCAAAGTCTC
AATATCAGGAGCAACGTATTCAGAATGTACCTGGGATGTTCTATGGTGTCAGCACAGCAT
TAACACGATACAAAGATCTCATTTATAGTAAGCTTCAAATTGTGAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7407#0      TCTGGCACGTTCTCCATGAACATTTAACTGAAAGTTTCG--ATTCTCGTGAGGCTGAAGA 58
consensus_7407#1      --------ATAGTTTGGGAAAAATTGAGCGGCAATTATATAGTAAACATTAAATGCAAGA 52
                               *  *    *** * ** *  *  * **      *   * * *     ****

consensus_7407#0      CGTAGAATTG----CCCTCAGCTTTCACCA-GTGACAAGGAGATGCAAATCTTGAATATA 113
consensus_7407#1      ATTGTACTTGAATGCTCTCAGCAATCGCCGTACGAAACAGTGGAATCATTCAAGTTTCAA 112
                        *  * ***    * ******  ** **    ** *  * *     * **  *  *  *

consensus_7407#0      TACAAGAGCTTCTTATGTCGCTAT----GCAGTGAATTTCAAG--GCTTTC--TCGGAAA 165
consensus_7407#1      TCGCTCAGATTATTGAAATACAATTTTCACATCGAACATCAGGTGGTTTACATTCATAAA 172
                      *     ** ** **      * **     **  ***  *** *  * ** *  **  ***

consensus_7407#0      TG-TACTCCACGAATGAAGAACTTCAAAATATATGTAA------AGGTATCGTT----GC 214
consensus_7407#1      TAATAATTAACTAACTTGTTCGTTCATTACGTTTTTCATCTTCTATATAACATTCTAGGC 232
                      *  ** *  ** **        ****  *  * * * *      *  ** * **    **

consensus_7407#0      AAAGTCTCAATATCAGGAGCAACGTATTCAGAATGTACCTGGGATGTTCTATGGTGTCAG 274
consensus_7407#1      AAAGTCTCAATATCAGGAGCAACGTATTCAGAATGTACCTGGGATGTTCTATGGTGTCAG 292
                      ************************************************************

consensus_7407#0      CACAGCATTAACACGATACAAAGATCTCATTTATAG---GCTTAAAGGAACCATGCTTCC 331
consensus_7407#1      CACAGCATTAACACGATACAAAGATCTCATTTATAGTAAGCTTCAAATTGTGAAGA---- 348
                      ************************************   **** **      * *     

consensus_7407#0      GAGCGACCCAGAATATACAAATGTCACAAAGGCTTGGAATTTCATCAAGGATTTGTTGGA 391
consensus_7407#1      ------------------------------------------------------------
                                                                                  

consensus_7407#0      TCGTTCGGAACAGGAAATTATTTTACAGGAGAAAATGTCGAATGCTAGAGAAGCACTTGG 451
consensus_7407#1      ------------------------------------------------------------
                                                                                  

consensus_7407#0      TAAACTGGATGGTCTTCGTGTAAAGTATACTCAGATCCCGTTACTACATCTAGAAGGGCC 511
consensus_7407#1      ------------------------------------------------------------
                                                                                  

consensus_7407#0      TGCAAAGAAACTTCCTAGACGTTCAATACATAGACGACTTTTGGATAGATATTTATTTCT 571
consensus_7407#1      ------------------------------------------------------------
                                                                                  

consensus_7407#0      TTTTTCCGAATATTTGGTCATGACTGAATCCCCTAATGCTGTTGGTCGTTATCAAGTTAA 631
consensus_7407#1      ------------------------------------------------------------
                                                                                  

consensus_7407#0      GTCAGAGATAGGTCTGGCTGGGATGACATTATGTGAAGTGAAAGATGATGAAGAAATCAA 691
consensus_7407#1      ------------------------------------------------------------
                                                                                  

consensus_7407#0      TGTTGAACATTGTTTTAGAATTAAAGCGAAAGAGCTATGCGTCGAGGTTGCTTTCTCAAA 751
consensus_7407#1      ------------------------------------------------------------
                                                                                  

consensus_7407#0      TGATGATGAAAAACAACTTTGGTGGCGTGAACTTCAACAGGCTATTGATTGTGAATGTAA 811
consensus_7407#1      ------------------------------------------------------------
                                                                                  

consensus_7407#0      CAGACCGAATAGTAATGGTTTCAATGAAAAAAAAGTCAATAATGAGTGCAAATAATTTAG 871
consensus_7407#1      ------------------------------------------------------------
                                                                                  

consensus_7407#0      GTGAAGTTGCAGCTCAATGGGTTAAAGATGAATCATCTACAATGTGTACAAATTGTTGTA 931
consensus_7407#1      ------------------------------------------------------------
                                                                                  

consensus_7407#0      CAGAATTTACTACACTTAATCGACGACATCATTGTCGTGCA 972
consensus_7407#1      -----------------------------------------