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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 933 fasta sequence
[CCCTACAGGCCAANAATTTGGCACGAGGATCGAATCCCAATTCTTTTGTGAAATATACTGACCATATAGCAATCGCTGGGGAAATCGGAGATTCAGATACTTTTGTGAATTGGTACAAAACAGTATTTGGAATGGAACGCATATTCATTAATATACAGGAAGATGAATCCAAAGGGTTTATAGTAAAGTTCAAAAATACTGGAATGATGTTGAAGGCAGTTTGCCATAGAAATCCAACTTCGAGTTCTGATTACCGTAATGCATGTAAATTTGTTTTTGTTGAACCCACAAAAGATTCAGAACCTAGTCAAGTGACTCGATTTCTACAAGTTAATTCAGGTCCAGGCTTACAACACATGGGACTCGCCATTGATAACATTATAGATGCAGCAGCTACCTGTCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTATGAGACTTTATCTCAGCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAAAACATCTGGAATACTTGTAGATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCTACTACAAATATTTACTGAACCTTTGTTTCAGAAAGATGGATTTTTCATGGAGTTAATTGAACGTCGTAATAATCAACTGGTTTCGGTGAAATAATATCAATGCTTTGTGGGAAGCATTGGAAATATCACANACATTGTAAAATCATCTAGTAAATTGTATACCATCAGATTAATGTTTCATTTTTATCAGCTATGTTGTAGAGAGAGATCACATCGTTTTCTTATACACTGTTATCACTCGCTTCCGTTACACTGAGAATATTGCATTACACTATTATAGAATCACGATCTACTGATTTTTTTATAATGAGCATTTGNTGATATCGATTACTACATTATACCCGATCTTTGTATTCAAATGGTGGTAC]
[+] EMBL CD080870 [CCCTACAGGCCAANAATTTGGCACGAGGATCGAATCCCAATTCTTTTGTGAAATATACTGACCATATAGCAATCGCTGGGGAAATCGGAGATTCAGATACTTTTGTGAATTGGTACAAAACAGTATTTGGAATGGAACGCATATTCATTAATATACAGGAAGATGAATCCAAAGGGTTTATAGTAAAGTTCAAAAATACTGGAATGATGTTGAAGGCAGTTTGCCATAGAAATCCAACTTCGAGTTCTGATTACCGTAATGCATGTAAATTTGTTTTTGTTGAACCCACAAAAGATTCAGAACCTAGTCAAGTGACTCGATTTCTACAAGTTAATTCAGGTCCAGGCTTACAACACATGGGACTCGCCATTGATAACATTATAGATGCAGCAGCTACCTGTCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTATGAGACTTTATCTCAGCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAAAACATCTGGAATACTTGTAGATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCTACTACAAATATTTACTGAACCTTTGTTTCAGAAAGATGGATTTTTCATGGAGTTAATTGAACGTCGTAATAATCAACTGGTTTCGGTGAAATAATATCAATGCTTTGTGGGAAGCATTGGAAATATCACANACATTGTAAAATCATCTAGTAAATTGTATACCATCAGATTAATGTTTCATTTTTATCAGCTATGTTGTAGAGAGAGATCACATCGTTTTCTTATACACTGTTATCACTCGCTTCCGTTACACTGAGAATATTGCATTACACTATTATAGAATCACGATCTACTGATTTTTTTATAATGAGCATTTGNTGATATCGATTACTACATTATACCCGATCTTTGTATTCAAATGGTGGTAC]
consensusID : consensus_7412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 773 fasta sequence
[AGGGCTGAATTTCAAAGATTGATAAAGATTGAAAAGGTGCACACTTACATGTTTTTTGTTCAACAAAATGTCTTAATAAATAATCTTATATAGGTGAAAACTCACCTTTTTTACACCTAACTTACTAACTGAAGTTGTTTTTTATTGCTGTAGAACCTAGTCAAGTGACTCGATTTCTACAAGTTAATTCAGGTCCAGGCTTACAACACATGGGACTCGCCATTGATAACATTATAGATGCAGCAGCTACCTGTCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTATGAGACTTTATCTCAGCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAAAACATCTGGAATACTTGTAGATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCTACTACAAATATTTACTGAACCTTTGTTTCAGAAAGATGGATTTTTCATGGAGTTAATTGAACGTCGTAATCAATCAACTGGTTTCGGTGAAAATAATATCAATGCTTTGTGGGAAGCATTGGAAATATCACANACATTGTAAAATCATCTAGTAAATTCTATGTTGTAGAGAGAGTATCACATCGTTTTCTTTATACCACTGTTTATCACCTCGCTTCCCGTTTACACTTGAGAAATAATATGCAATTTACACTTAATTAATAGAGATCAACAGATACATACTGGAATATATATATATATATAAATTGGATGCAATATTTGTATGATTATCGGAAATCTAGCATTACACATTTAT]
[+] EMBL CD082994 [AGGGCTGAATTTCAAAGATTGATAAAGATTGAAAAGGTGCACACTTACATGTTTTTTGTTCAACAAAATGTCTTAATAAATAATCTTATATAGGTGAAAACTCACCTTTTTTACACCTAACTTACTAACTGAAGTTGTTTTTTATTGCTGTAGAACCTAGTCAAGTGACTCGATTTCTACAAGTTAATTCAGGTCCAGGCTTACAACACATGGGACTCGCCATTGATAACATTATAGATGCAGCAGCTACCTGTCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTATGAGACTTTATCTCAGCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAAAACATCTGGAATACTTGTAGATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCTACTACAAATATTTACTGAACCTTTGTTTCAGAAAGATGGATTTTTCATGGAGTTAATTGAACGTCGTAATCAATCAACTGGTTTCGGTGAAAATAATATCAATGCTTTGTGGGAAGCATTGGAAATATCACANACATTGTAAAATCATCTAGTAAATTCTATGTTGTAGAGAGAGTATCACATCGTT ]
[-] EMBL CD076577 [ TGCTGTAGAACCTAGTCAAGTGACTCGATTTCTACAAGTTAATTCAGGTCCAGGCTTACAACACATGGGACTCGCCATTGATAACATTATAGATGCAGCAGCTACCTGTCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTATGAGACTTTATCTCAGCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAAAACATCTGGAATACTTGTAGATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCTACTACAAATATTTACTGAACCTTTGTTTCAGAAAGATGGATTTTTCATGGAGTTAATTGAACGTCGTAATCAATCAACTGGTTTCGGTGAAAATAATATCAATGCTTTGTGGGAAGCATTGGAAATATCACAAACATTGTAAAATCATCTAGTAAATTCTATGTTGTAGAGAGAGTATCACATCGTTTTCTTTATACCACTGTTTATCACCTCGCTTCCCGTTTACACTTGAGAAATAATATGCAATTTACACTTAATTAATAGAGATCAACAGATACATACTGGAATATATATATATATATAAATTGGATGCAATATTTGTATGATTATCGGAAATCTAGCATTACACATTTAT]
consensusID : consensus_7412#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence
[CTACTATTTTCCCCCAGGTCCAGGCTTACAACACATGGGACTCGCCATTGNTNNCATTATAGATGCAGCAGCTACCTGTCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTATGAGACTTTATCTCAGCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAAAACATCTGGAATACTTGTACATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCTACTACAAATATTTACTGAACCTTTGTTTCACAAAGATGGATTTTTCATGGAGTTAATTGAACGTCGTAATCAATCA]
[+] EMBL CD139102 [CTACTATTTTCCCCCAGGTCCAGGCTTACAACACATGGGACTCGCCATTGNTNNCATTATAGATGCAGCAGCTACCTGTCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTATGAGACTTTATCTCAGCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAAAACATCTGGAATACTTGTACATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCTACTACAAATATTTACTGAACCTTTGTTTCACAAAGATGGATTTTTCATGGAGTTAATTGAACGTCGTAATCAATCA]
consensusID : consensus_7412#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence
[GACTTGGAGGAAGTGCTAAATGAGAATGAATCGAATCCCAATTCTTTTGTGAAATATACTGACCATATAGCAATCGCTGGGGAAATCGGAGATTCAGATACTTTTGTGAATTGGTACAAAACAGTATTTGGAATGGAACGCATATTCATTAATATACAGGAAGATGAATCCAAAGGGTTTATAGTAAAGTTCAAAAATACTGGAATGATGTTGAAGGCAGTTTGCCATAGAAATCCAACTTCGAGTTCTGATTACCGTAATGCATGTAAATTTGTTTTTGTTGAACCCACAAA]
[+] EMBL CD077818 [GACTTGGAGGAAGTGCTAAATGAGAATGAATCGAATCCCAATTCTTTTGTGAAATATACTGACCATATAGCAATCGCTGGGGAAATCGGAGATTCAGATACTTTTGTGAATTGGTACAAAACAGTATTTGGAATGGAACGCATATTCATTAATATACAGGAAGATGAATCCAAAGGGTTTATAGTAAAGTTCAAAAATACTGGAATGATGTTGAAGGCAGTTTGCCATAGAAATCCAACTTCGAGTTCTGATTACCGTAATGCATGTAAATTTGTTTTTGTTGAACCCACAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7412#0 ------------------------------------------------------------
consensus_7412#3 ------------------------------------------------------------
consensus_7412#1 AGGGCTGAATTTCAAAGATTGATAAAGATTGAAAAGGTGCACACTTACATGTTTTTTGTT 60
consensus_7412#2 ------------------------------------------------------------
consensus_7412#0 ------------------------------------------------------------
consensus_7412#3 ------------------------------------------------------------
consensus_7412#1 CAACAAAATGTCTTAATAAATAATCTTATATAGGTGAAAACTCACCTTTTTTACACCTAA 120
consensus_7412#2 ------------------------------------------------------------
consensus_7412#0 ------------------------------------------------------------
consensus_7412#3 ------------------------------------------------------------
consensus_7412#1 CTTACTAACTGAAGTTGTTTTTTATTGCTGTAGAACCTAGTCAAGTGACTCGATTTCTAC 180
consensus_7412#2 --------------------------------------------------------CTAC 4
consensus_7412#0 -CCCTACAGGCCAANAATTTGGCACGA--GGATCGAATCCCAATTCTTTTGTGAAATATA 57
consensus_7412#3 GACTTGGAGG--AAGTGCTAAATGAGAATGAATCGAATCCCAATTCTTTTGTGAAATATA 58
consensus_7412#1 AAGTTAATTC--AGGTCCAGGCTTACAACACATGGGACTCGCCATTGATAACATTATAGA 238
consensus_7412#2 TATTTTCCCCC-AGGTCCAGGCTTACAACACATGGGACTCGCCATTGNTNNCATTATAGA 63
* * * ** * * * * * *** *
consensus_7412#0 CTGACCATATAGCAATCGCTGGGGAAATCGGAGATTCA--GATACTTTTGTGAATTGGTA 115
consensus_7412#3 CTGACCATATAGCAATCGCTGGGGAAATCGGAGATTCA--GATACTTTTGTGAATTGGTA 116
consensus_7412#1 TGCAGCAGCTACCTGTCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTA 298
consensus_7412#2 TGCAGCAGCTACCTGTCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTA 123
* ** ** * *** * * *** * * ** * * **
consensus_7412#0 CAAAAC--------AGTATTTGGAATGGAACGCATATTCATTA-ATATACAGGAAGATGA 166
consensus_7412#3 CAAAAC--------AGTATTTGGAATGGAACGCATATTCATTA-ATATACAGGAAGATGA 167
consensus_7412#1 TGAGACTTTATCTCAGCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAA 358
consensus_7412#2 TGAGACTTTATCTCAGCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAA 183
* ** ** * * * * *** * ** *** ** ** ** * ** * *
consensus_7412#0 A---TCCAAAGGGTTTATAG-TAAAGTTCAAAAATACTGGAATGATGTTGAAGGCAGTTT 222
consensus_7412#3 A---TCCAAAGGGTTTATAG-TAAAGTTCAAAAATACTGGAATGATGTTGAAGGCAGTTT 223
consensus_7412#1 AACATCTGGAATACTTGTAGATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCT 418
consensus_7412#2 AACATCTGGAATACTTGTACATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCT 243
* ** * ** ** ***** *** * * ** *** *** *
consensus_7412#0 GCCATAGAAATCCAACTTCGAGTTCTGATT-ACCGTAATGCATGTAAATTTGTTTTTGTT 281
consensus_7412#3 GCCATAGAAATCCAACTTCGAGTTCTGATT-ACCGTAATGCATGTAAATTTGTTTTTGTT 282
consensus_7412#1 ACTACAAATATTTA--CTGAACCTTTGTTTCAGAAAGATGGATTTTTCATGGAGTTAATT 476
consensus_7412#2 ACTACAAATATTTA--CTGAACCTTTGTTTCACAAAGATGGATTTTTCATGGAGTTAATT 301
* * * * ** * * * * ** ** * *** ** * * * ** **
consensus_7412#0 GAAC-CCACAAAAGATTCAGAACCTAGTCAAGTGACTCGATTTCTACAAGTTAATTCAGG 340
consensus_7412#3 GAAC-CCACAAA------------------------------------------------ 293
consensus_7412#1 GAACGTCGTAATCAATCAACTGGTTTCGGTGAAAATAATATCAATGCTTTGTGGGAAGCA 536
consensus_7412#2 GAACGTCGTAATCAATCA------------------------------------------ 319
**** * **
consensus_7412#0 TCCAGGCTTACAACACATGGGACTCGCCATTGATAACATTATAGATGCAGCAGCTACCTG 400
consensus_7412#3 ------------------------------------------------------------
consensus_7412#1 TTGGAAATATCACANACATTGTAAAATCATCTAGTAAATTCTATGTTGTAGAGAGAGTAT 596
consensus_7412#2 ------------------------------------------------------------
consensus_7412#0 TCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTATGAGACTTTATCTCA 460
consensus_7412#3 ------------------------------------------------------------
consensus_7412#1 CACATCGTTTTCTTTATACCACTGTTTATCACCTCGCTTCCCGTTTACACTTGAGAAATA 656
consensus_7412#2 ------------------------------------------------------------
consensus_7412#0 GCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAAAACATCTGGAATACT 520
consensus_7412#3 ------------------------------------------------------------
consensus_7412#1 ATATGCAATTTACACTTAATTAATAGAGATCAACAGATACATACTGGAATATATATATAT 716
consensus_7412#2 ------------------------------------------------------------
consensus_7412#0 TGTAGATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCTACTACAAATATTTAC 580
consensus_7412#3 ------------------------------------------------------------
consensus_7412#1 ATATAAATTGGATGCAATATTTGTATGATTATCGGAAATCTAGCATTACACATTTAT--- 773
consensus_7412#2 ------------------------------------------------------------
consensus_7412#0 TGAACCTTTGTTTCAGAAAGATGGATTTTTCATGGAGTTAATTGAACGTCGTAATAATCA 640
consensus_7412#3 ------------------------------------------------------------
consensus_7412#1 ------------------------------------------------------------
consensus_7412#2 ------------------------------------------------------------
consensus_7412#0 ACTGGTTTCGGTGAAATAATATCAATGCTTTGTGGGAAGCATTGGAAATATCACANACAT 700
consensus_7412#3 ------------------------------------------------------------
consensus_7412#1 ------------------------------------------------------------
consensus_7412#2 ------------------------------------------------------------
consensus_7412#0 TGTAAAATCATCTAGTAAATTGTATACCATCAGATTAATGTTTCATTTTTATCAGCTATG 760
consensus_7412#3 ------------------------------------------------------------
consensus_7412#1 ------------------------------------------------------------
consensus_7412#2 ------------------------------------------------------------
consensus_7412#0 TTGTAGAGAGAGATCACATCGTTTTCTTATACACTGTTATCACTCGCTTCCGTTACACTG 820
consensus_7412#3 ------------------------------------------------------------
consensus_7412#1 ------------------------------------------------------------
consensus_7412#2 ------------------------------------------------------------
consensus_7412#0 AGAATATTGCATTACACTATTATAGAATCACGATCTACTGATTTTTTTATAATGAGCATT 880
consensus_7412#3 ------------------------------------------------------------
consensus_7412#1 ------------------------------------------------------------
consensus_7412#2 ------------------------------------------------------------
consensus_7412#0 TGNTGATATCGATTACTACATTATACCCGATCTTTGTATTCAAATGGTGGTAC 933
consensus_7412#3 -----------------------------------------------------
consensus_7412#1 -----------------------------------------------------
consensus_7412#2 -----------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||