These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 933 fasta sequence [CCCTACAGGCCAANAATTTGGCACGAGGATCGAATCCCAATTCTTTTGTGAAATATACTGACCATATAGCAATCGCTGGGGAAATCGGAGATTCAGATACTTTTGTGAATTGGTACAAAACAGTATTTGGAATGGAACGCATATTCATTAATATACAGGAAGATGAATCCAAAGGGTTTATAGTAAAGTTCAAAAATACTGGAATGATGTTGAAGGCAGTTTGCCATAGAAATCCAACTTCGAGTTCTGATTACCGTAATGCATGTAAATTTGTTTTTGTTGAACCCACAAAAGATTCAGAACCTAGTCAAGTGACTCGATTTCTACAAGTTAATTCAGGTCCAGGCTTACAACACATGGGACTCGCCATTGATAACATTATAGATGCAGCAGCTACCTGTCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTATGAGACTTTATCTCAGCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAAAACATCTGGAATACTTGTAGATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCTACTACAAATATTTACTGAACCTTTGTTTCAGAAAGATGGATTTTTCATGGAGTTAATTGAACGTCGTAATAATCAACTGGTTTCGGTGAAATAATATCAATGCTTTGTGGGAAGCATTGGAAATATCACANACATTGTAAAATCATCTAGTAAATTGTATACCATCAGATTAATGTTTCATTTTTATCAGCTATGTTGTAGAGAGAGATCACATCGTTTTCTTATACACTGTTATCACTCGCTTCCGTTACACTGAGAATATTGCATTACACTATTATAGAATCACGATCTACTGATTTTTTTATAATGAGCATTTGNTGATATCGATTACTACATTATACCCGATCTTTGTATTCAAATGGTGGTAC] [+] EMBL CD080870 [CCCTACAGGCCAANAATTTGGCACGAGGATCGAATCCCAATTCTTTTGTGAAATATACTGACCATATAGCAATCGCTGGGGAAATCGGAGATTCAGATACTTTTGTGAATTGGTACAAAACAGTATTTGGAATGGAACGCATATTCATTAATATACAGGAAGATGAATCCAAAGGGTTTATAGTAAAGTTCAAAAATACTGGAATGATGTTGAAGGCAGTTTGCCATAGAAATCCAACTTCGAGTTCTGATTACCGTAATGCATGTAAATTTGTTTTTGTTGAACCCACAAAAGATTCAGAACCTAGTCAAGTGACTCGATTTCTACAAGTTAATTCAGGTCCAGGCTTACAACACATGGGACTCGCCATTGATAACATTATAGATGCAGCAGCTACCTGTCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTATGAGACTTTATCTCAGCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAAAACATCTGGAATACTTGTAGATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCTACTACAAATATTTACTGAACCTTTGTTTCAGAAAGATGGATTTTTCATGGAGTTAATTGAACGTCGTAATAATCAACTGGTTTCGGTGAAATAATATCAATGCTTTGTGGGAAGCATTGGAAATATCACANACATTGTAAAATCATCTAGTAAATTGTATACCATCAGATTAATGTTTCATTTTTATCAGCTATGTTGTAGAGAGAGATCACATCGTTTTCTTATACACTGTTATCACTCGCTTCCGTTACACTGAGAATATTGCATTACACTATTATAGAATCACGATCTACTGATTTTTTTATAATGAGCATTTGNTGATATCGATTACTACATTATACCCGATCTTTGTATTCAAATGGTGGTAC] consensusID : consensus_7412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 773 fasta sequence [AGGGCTGAATTTCAAAGATTGATAAAGATTGAAAAGGTGCACACTTACATGTTTTTTGTTCAACAAAATGTCTTAATAAATAATCTTATATAGGTGAAAACTCACCTTTTTTACACCTAACTTACTAACTGAAGTTGTTTTTTATTGCTGTAGAACCTAGTCAAGTGACTCGATTTCTACAAGTTAATTCAGGTCCAGGCTTACAACACATGGGACTCGCCATTGATAACATTATAGATGCAGCAGCTACCTGTCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTATGAGACTTTATCTCAGCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAAAACATCTGGAATACTTGTAGATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCTACTACAAATATTTACTGAACCTTTGTTTCAGAAAGATGGATTTTTCATGGAGTTAATTGAACGTCGTAATCAATCAACTGGTTTCGGTGAAAATAATATCAATGCTTTGTGGGAAGCATTGGAAATATCACANACATTGTAAAATCATCTAGTAAATTCTATGTTGTAGAGAGAGTATCACATCGTTTTCTTTATACCACTGTTTATCACCTCGCTTCCCGTTTACACTTGAGAAATAATATGCAATTTACACTTAATTAATAGAGATCAACAGATACATACTGGAATATATATATATATATAAATTGGATGCAATATTTGTATGATTATCGGAAATCTAGCATTACACATTTAT] [+] EMBL CD082994 [AGGGCTGAATTTCAAAGATTGATAAAGATTGAAAAGGTGCACACTTACATGTTTTTTGTTCAACAAAATGTCTTAATAAATAATCTTATATAGGTGAAAACTCACCTTTTTTACACCTAACTTACTAACTGAAGTTGTTTTTTATTGCTGTAGAACCTAGTCAAGTGACTCGATTTCTACAAGTTAATTCAGGTCCAGGCTTACAACACATGGGACTCGCCATTGATAACATTATAGATGCAGCAGCTACCTGTCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTATGAGACTTTATCTCAGCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAAAACATCTGGAATACTTGTAGATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCTACTACAAATATTTACTGAACCTTTGTTTCAGAAAGATGGATTTTTCATGGAGTTAATTGAACGTCGTAATCAATCAACTGGTTTCGGTGAAAATAATATCAATGCTTTGTGGGAAGCATTGGAAATATCACANACATTGTAAAATCATCTAGTAAATTCTATGTTGTAGAGAGAGTATCACATCGTT ] [-] EMBL CD076577 [ TGCTGTAGAACCTAGTCAAGTGACTCGATTTCTACAAGTTAATTCAGGTCCAGGCTTACAACACATGGGACTCGCCATTGATAACATTATAGATGCAGCAGCTACCTGTCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTATGAGACTTTATCTCAGCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAAAACATCTGGAATACTTGTAGATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCTACTACAAATATTTACTGAACCTTTGTTTCAGAAAGATGGATTTTTCATGGAGTTAATTGAACGTCGTAATCAATCAACTGGTTTCGGTGAAAATAATATCAATGCTTTGTGGGAAGCATTGGAAATATCACAAACATTGTAAAATCATCTAGTAAATTCTATGTTGTAGAGAGAGTATCACATCGTTTTCTTTATACCACTGTTTATCACCTCGCTTCCCGTTTACACTTGAGAAATAATATGCAATTTACACTTAATTAATAGAGATCAACAGATACATACTGGAATATATATATATATATAAATTGGATGCAATATTTGTATGATTATCGGAAATCTAGCATTACACATTTAT] consensusID : consensus_7412#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [CTACTATTTTCCCCCAGGTCCAGGCTTACAACACATGGGACTCGCCATTGNTNNCATTATAGATGCAGCAGCTACCTGTCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTATGAGACTTTATCTCAGCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAAAACATCTGGAATACTTGTACATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCTACTACAAATATTTACTGAACCTTTGTTTCACAAAGATGGATTTTTCATGGAGTTAATTGAACGTCGTAATCAATCA] [+] EMBL CD139102 [CTACTATTTTCCCCCAGGTCCAGGCTTACAACACATGGGACTCGCCATTGNTNNCATTATAGATGCAGCAGCTACCTGTCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTATGAGACTTTATCTCAGCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAAAACATCTGGAATACTTGTACATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCTACTACAAATATTTACTGAACCTTTGTTTCACAAAGATGGATTTTTCATGGAGTTAATTGAACGTCGTAATCAATCA] consensusID : consensus_7412#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [GACTTGGAGGAAGTGCTAAATGAGAATGAATCGAATCCCAATTCTTTTGTGAAATATACTGACCATATAGCAATCGCTGGGGAAATCGGAGATTCAGATACTTTTGTGAATTGGTACAAAACAGTATTTGGAATGGAACGCATATTCATTAATATACAGGAAGATGAATCCAAAGGGTTTATAGTAAAGTTCAAAAATACTGGAATGATGTTGAAGGCAGTTTGCCATAGAAATCCAACTTCGAGTTCTGATTACCGTAATGCATGTAAATTTGTTTTTGTTGAACCCACAAA] [+] EMBL CD077818 [GACTTGGAGGAAGTGCTAAATGAGAATGAATCGAATCCCAATTCTTTTGTGAAATATACTGACCATATAGCAATCGCTGGGGAAATCGGAGATTCAGATACTTTTGTGAATTGGTACAAAACAGTATTTGGAATGGAACGCATATTCATTAATATACAGGAAGATGAATCCAAAGGGTTTATAGTAAAGTTCAAAAATACTGGAATGATGTTGAAGGCAGTTTGCCATAGAAATCCAACTTCGAGTTCTGATTACCGTAATGCATGTAAATTTGTTTTTGTTGAACCCACAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7412#0 ------------------------------------------------------------ consensus_7412#3 ------------------------------------------------------------ consensus_7412#1 AGGGCTGAATTTCAAAGATTGATAAAGATTGAAAAGGTGCACACTTACATGTTTTTTGTT 60 consensus_7412#2 ------------------------------------------------------------ consensus_7412#0 ------------------------------------------------------------ consensus_7412#3 ------------------------------------------------------------ consensus_7412#1 CAACAAAATGTCTTAATAAATAATCTTATATAGGTGAAAACTCACCTTTTTTACACCTAA 120 consensus_7412#2 ------------------------------------------------------------ consensus_7412#0 ------------------------------------------------------------ consensus_7412#3 ------------------------------------------------------------ consensus_7412#1 CTTACTAACTGAAGTTGTTTTTTATTGCTGTAGAACCTAGTCAAGTGACTCGATTTCTAC 180 consensus_7412#2 --------------------------------------------------------CTAC 4 consensus_7412#0 -CCCTACAGGCCAANAATTTGGCACGA--GGATCGAATCCCAATTCTTTTGTGAAATATA 57 consensus_7412#3 GACTTGGAGG--AAGTGCTAAATGAGAATGAATCGAATCCCAATTCTTTTGTGAAATATA 58 consensus_7412#1 AAGTTAATTC--AGGTCCAGGCTTACAACACATGGGACTCGCCATTGATAACATTATAGA 238 consensus_7412#2 TATTTTCCCCC-AGGTCCAGGCTTACAACACATGGGACTCGCCATTGNTNNCATTATAGA 63 * * * ** * * * * * *** * consensus_7412#0 CTGACCATATAGCAATCGCTGGGGAAATCGGAGATTCA--GATACTTTTGTGAATTGGTA 115 consensus_7412#3 CTGACCATATAGCAATCGCTGGGGAAATCGGAGATTCA--GATACTTTTGTGAATTGGTA 116 consensus_7412#1 TGCAGCAGCTACCTGTCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTA 298 consensus_7412#2 TGCAGCAGCTACCTGTCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTA 123 * ** ** * *** * * *** * * ** * * ** consensus_7412#0 CAAAAC--------AGTATTTGGAATGGAACGCATATTCATTA-ATATACAGGAAGATGA 166 consensus_7412#3 CAAAAC--------AGTATTTGGAATGGAACGCATATTCATTA-ATATACAGGAAGATGA 167 consensus_7412#1 TGAGACTTTATCTCAGCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAA 358 consensus_7412#2 TGAGACTTTATCTCAGCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAA 183 * ** ** * * * * *** * ** *** ** ** ** * ** * * consensus_7412#0 A---TCCAAAGGGTTTATAG-TAAAGTTCAAAAATACTGGAATGATGTTGAAGGCAGTTT 222 consensus_7412#3 A---TCCAAAGGGTTTATAG-TAAAGTTCAAAAATACTGGAATGATGTTGAAGGCAGTTT 223 consensus_7412#1 AACATCTGGAATACTTGTAGATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCT 418 consensus_7412#2 AACATCTGGAATACTTGTACATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCT 243 * ** * ** ** ***** *** * * ** *** *** * consensus_7412#0 GCCATAGAAATCCAACTTCGAGTTCTGATT-ACCGTAATGCATGTAAATTTGTTTTTGTT 281 consensus_7412#3 GCCATAGAAATCCAACTTCGAGTTCTGATT-ACCGTAATGCATGTAAATTTGTTTTTGTT 282 consensus_7412#1 ACTACAAATATTTA--CTGAACCTTTGTTTCAGAAAGATGGATTTTTCATGGAGTTAATT 476 consensus_7412#2 ACTACAAATATTTA--CTGAACCTTTGTTTCACAAAGATGGATTTTTCATGGAGTTAATT 301 * * * * ** * * * * ** ** * *** ** * * * ** ** consensus_7412#0 GAAC-CCACAAAAGATTCAGAACCTAGTCAAGTGACTCGATTTCTACAAGTTAATTCAGG 340 consensus_7412#3 GAAC-CCACAAA------------------------------------------------ 293 consensus_7412#1 GAACGTCGTAATCAATCAACTGGTTTCGGTGAAAATAATATCAATGCTTTGTGGGAAGCA 536 consensus_7412#2 GAACGTCGTAATCAATCA------------------------------------------ 319 **** * ** consensus_7412#0 TCCAGGCTTACAACACATGGGACTCGCCATTGATAACATTATAGATGCAGCAGCTACCTG 400 consensus_7412#3 ------------------------------------------------------------ consensus_7412#1 TTGGAAATATCACANACATTGTAAAATCATCTAGTAAATTCTATGTTGTAGAGAGAGTAT 596 consensus_7412#2 ------------------------------------------------------------ consensus_7412#0 TCGTCAAAATGGTATAAAATTTATCACTGCTCCAGACGTCTATTATGAGACTTTATCTCA 460 consensus_7412#3 ------------------------------------------------------------ consensus_7412#1 CACATCGTTTTCTTTATACCACTGTTTATCACCTCGCTTCCCGTTTACACTTGAGAAATA 656 consensus_7412#2 ------------------------------------------------------------ consensus_7412#0 GCGTATCAATTTGAAAGAATTTTCTTTGGATTTAGAAAAACTTAAAACATCTGGAATACT 520 consensus_7412#3 ------------------------------------------------------------ consensus_7412#1 ATATGCAATTTACACTTAATTAATAGAGATCAACAGATACATACTGGAATATATATATAT 716 consensus_7412#2 ------------------------------------------------------------ consensus_7412#0 TGTAGATAAAGAGTTAAACAATGAAGGTAATCAAATAGGAAGTCTACTACAAATATTTAC 580 consensus_7412#3 ------------------------------------------------------------ consensus_7412#1 ATATAAATTGGATGCAATATTTGTATGATTATCGGAAATCTAGCATTACACATTTAT--- 773 consensus_7412#2 ------------------------------------------------------------ consensus_7412#0 TGAACCTTTGTTTCAGAAAGATGGATTTTTCATGGAGTTAATTGAACGTCGTAATAATCA 640 consensus_7412#3 ------------------------------------------------------------ consensus_7412#1 ------------------------------------------------------------ consensus_7412#2 ------------------------------------------------------------ consensus_7412#0 ACTGGTTTCGGTGAAATAATATCAATGCTTTGTGGGAAGCATTGGAAATATCACANACAT 700 consensus_7412#3 ------------------------------------------------------------ consensus_7412#1 ------------------------------------------------------------ consensus_7412#2 ------------------------------------------------------------ consensus_7412#0 TGTAAAATCATCTAGTAAATTGTATACCATCAGATTAATGTTTCATTTTTATCAGCTATG 760 consensus_7412#3 ------------------------------------------------------------ consensus_7412#1 ------------------------------------------------------------ consensus_7412#2 ------------------------------------------------------------ consensus_7412#0 TTGTAGAGAGAGATCACATCGTTTTCTTATACACTGTTATCACTCGCTTCCGTTACACTG 820 consensus_7412#3 ------------------------------------------------------------ consensus_7412#1 ------------------------------------------------------------ consensus_7412#2 ------------------------------------------------------------ consensus_7412#0 AGAATATTGCATTACACTATTATAGAATCACGATCTACTGATTTTTTTATAATGAGCATT 880 consensus_7412#3 ------------------------------------------------------------ consensus_7412#1 ------------------------------------------------------------ consensus_7412#2 ------------------------------------------------------------ consensus_7412#0 TGNTGATATCGATTACTACATTATACCCGATCTTTGTATTCAAATGGTGGTAC 933 consensus_7412#3 ----------------------------------------------------- consensus_7412#1 ----------------------------------------------------- consensus_7412#2 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||