These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7419#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 498 fasta sequence [GCTGATCTACCAGTGGAAATGGGTAGAGCAATGTGTTTAGCTATCCAACAATTTGATGAAGATCATTCAGAGGAAGTGAATATGCGTGTCGGTGTACACACTGGTAAAGTGATCTGTGGTATCGTCGGAACAAGACGCTTTAAATTTGATGTTTGGTCAAATGATGTTACATTAGCTAATGAAATGGAGTCTAGTGGTGAAGCGGGAAAAGTGCACATTTCTGAGGCTACTTTAAGTTTTATAAAAGATATTTATGAAGTTTCTGAAGGAAAACCTGTTCATGATATTCGAAAATTTAAAGTGTTAGTTGAATTTTTCAATAAAGAAGAACAATGTTTCGCCATTAAACATACTCAAGACGAAGCTATGATCAAAACATATTTTATTGAAAAACGTTTGGATGATAAGCCAGTCGTCAGTTTGCCACCAATGCAACTGGAAGTGGGTCCAGTTCAATTACAAAGTACTAATAATGTCTGTGATACTGAAACTGTTACC] [+] EMBL CD202828 [GCTGATCTACCAGTGGAAATGGGTAGAGCAATGTGTTTAGCTATCCAACAATTTGATGAAGATCATTCAGAGGAAGTGAATATGCGTGTCGGTGTACACACTGGTAAAGTGATCTGTGGTATCGTCGGAACGAGACGCTTTAAATTTGATGTTTGGTCAAATGATGTTACATTAGCTAATGAAATGGAGT ] [+] EMBL CD068436 [ TGTTTAGCTATCCAACAATTTGATGAAGATCATTCAGAGGAAGTGAATATGCGTGTCGGTGTACACACTGGTAAAGTGATCTGTGGTATCGTCGGAACAAGACGCTTTAAATTTGATGTTTGGTCAAATGATGTTACATTAGCTAATGAAATGGAGTCTAGTGGTGAAGCGGGAAAAGTGCACATTTCTGAGGCTACTTTAAGTTTTATAAAAGATATTTATGAAGTTTCTGAAGGAAAACCTGTTCATGATATTCGAAAATTTAAAGTGTTAGTTGAATTTTTCAATAAAGAAGAACAATGTTTCGCCATTAAACATACTCAAGACGAAGCTATGATCAAAACATATTTTATTGAAAAACGTTTGGATGATAAGCCAGTCGTCAGTTTGCCACCAATGCAACTGGAAGTGGGTCCAGTTCAATTACAAAGTACTAATAATGTCTGTGATACTGAAACTGTTACC] [-] EMBL CD187557 [ CTGTGGTATCGTCGGAACAAGACGCTTTAAATTTGATGTTTGGTCAAATGATGTTACATTAGCTAATGAAATGGAGTCTAGTGGTGAAGCGGGAAAAGTGCACATTTCTGAGGCTACTTTAAGTTTTGTAAAAGATATTTATGAAGTTTCTGAAGGAAAACCTGTTCATGATATTCGAAAATTTAAAGTGTTAGTTGAATTTTTCAATAAAGAAGAACAATGTTTCGCCATTAAACATACTCAAGACGAAGCTATGATCAAAACATATTTTATTGAAAAACGTTTGGATGATAA ] consensusID : consensus_7419#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence [ACATTTGTGAGGCTACTTTAAGTTTTGTAAAAGATATTTATGAAGTTTCTGAAGGAAAACCTGTTCATGATATTCGAAAATTTAAAGTGTTAGTTGAATTTTTCAATAAAGAAGAACAATGTTTCGCCATTAAACATACTCAAGACGAAGCTATGATCAAAACATATTTTATTGAAAAACGTTTGGATGATAAGCCAGTCGTCGGTTTGCCACCAATGCAACTGGAAGTTGGTCCAGTTCAATTACAAAGTGTGAATCAGAGTTCAAACTTGCAGCCTATTTCCTGAAATTATGAATGTTCCAACCACTATGTCATTGCTTAAAGAAATATCAGTTTTATAGATGTGGCGGTTTATGTTAATGCGTTTCTAGATCCTAATACTAATAATGTTTGTGATAC] [-] EMBL CD114417 [ACATTTGTGAGGCTACTTTAAGTTTTGTAAAAGATATTTATGAAGTTTCTGAAGGAAAACCTGTTCATGATATTCGAAAATTTAAAGTGTTAGTTGAATTTTTCAATAAAGAAGAACAATGTTTCGCCATTAAACATACTCAAGACGAAGCTATGATCAAAACATATTTTATTGAAAAACGTTTGGATGATAAGCCAGTCGTCGGTTTGCCACCAATGCAACTGGAAGTTGGTCCAGTTCAATTACAAAGTGTGAATCAGAGTTCAAACTTGCAGCCTATTTCCTGAAATTATGAATGTTCCAACCACTATGTCATTGCTTAAAGAAATATCAGTTTTATAGATGTGGCGGTTTATGTTAATGCGTTTCTAGATCCTAATACTAATAATGTTTGTGATAC] consensusID : consensus_7419#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [CTACGTACCCTGCAATTACCGACTGCGGCATATGGGTAGAGCAATGTGTTTAGCTATCCAACTTTTTGATGAAGATCATTCAGAGGAAGTGAATATGCGTGTCGGTGTACACACTGGTAAAGTGATCTGTGGTATCGTCGGAACAAGACGCTTTAAATTTGATGTTTGGTCAAATGATGTTACATTAGCTAATGAAATGGA] [+] EMBL CD168576 [CTACGTACCCTGCAATTACCGACTGCGGCATATGGGTAGAGCAATGTGTTTAGCTATCCAACTTTTTGATGAAGATCATTCAGAGGAAGTGAATATGCGTGTCGGTGTACACACTGGTAAAGTGATCTGTGGTATCGTCGGAACAAGACGCTTTAAATTTGATGTTTGGTCAAATGATGTTACATTAGCTAATGAAATGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7419#0 ----------------------------GCTGATCTACCAGTGGAAATGGGTAGAGCAAT 32 consensus_7419#2 ---------------CTACGTACCCTGCAATTACCGACTGCGGCATATGGGTAGAGCAAT 45 consensus_7419#1 ACATTTGTGAGGCTACTTTAAGTTTTGTAAAAGATATTTATGAAGTTTCTGAAGGAAAAC 60 * * ** ** consensus_7419#0 GTGTTTA-GCTATCCAACAATTTGATGAA-------GATCATTCAGAGGAAGTGAATATG 84 consensus_7419#2 GTGTTTA-GCTATCCAACTTTTTGATGAA-------GATCATTCAGAGGAAGTGAATATG 97 consensus_7419#1 CTGTTCATGATATTCGAAAATTTAAAGTGTTAGTTGAATTTTTCAATAAAGAAGAACA-A 119 **** * * *** * * *** * * ** **** * *** * consensus_7419#0 CGTGTCGGTGT-ACACACTGGTAAAGTGATCTGTGGTATCGTCGGAACAAGACGCTTTAA 143 consensus_7419#2 CGTGTCGGTGT-ACACACTGGTAAAGTGATCTGTGGTATCGTCGGAACAAGACGCTTTAA 156 consensus_7419#1 TGTTTCGCCATTAAACATACTCAAGACGAA----GCTATGATCAAAACATATTTTATTGA 175 ** *** * * *** ** ** * *** ** **** ** * consensus_7419#0 A------TTTGATGTTTGGTCAAATGATGTTACATTAGCTAATGAAATGGAGTCTAGTGG 197 consensus_7419#2 A------TTTGATGTTTGGTCAAATGATGTTACATTAGCTAATGAAATGGA--------- 201 consensus_7419#1 AAAACGTTTGGATGATAAGCCAGTCGTCGGTTTGCCACCAATGCAACTGGAAGTTGGTCC 235 * ** **** * * ** * * * * * * ** **** consensus_7419#0 TGAAGCGGGAAAAGTGCACATTTCTGAGGCTACTTTAAGTTTTATAAAAGATATTTATGA 257 consensus_7419#2 ------------------------------------------------------------ consensus_7419#1 AGTTCAATTACAAAGTGTGAATCAGAGTTCAAACTTGCAGCCTATTTCCTGAAATTATGA 295 consensus_7419#0 AGTTTCTGAAGGAAAACCTGTTCATGATATTCGAAAATTTAAAGTGTTAGTTGAATTTTT 317 consensus_7419#2 ------------------------------------------------------------ consensus_7419#1 ATGTTCCAACCACTATGTCATTGCTTAAAGAAATATCAGTTTTATAGATGTGGCGGTTTA 355 consensus_7419#0 CAATAAAGAAGAACAATGTTTCGCCATTAAACATACTCAAGACGAAGCTATGATCAAAAC 377 consensus_7419#2 ------------------------------------------------------------ consensus_7419#1 TGTTAATGCGTTTCTAGATCCTAATACTAATAATGTTTGTGATAC--------------- 400 consensus_7419#0 ATATTTTATTGAAAAACGTTTGGATGATAAGCCAGTCGTCAGTTTGCCACCAATGCAACT 437 consensus_7419#2 ------------------------------------------------------------ consensus_7419#1 ------------------------------------------------------------ consensus_7419#0 GGAAGTGGGTCCAGTTCAATTACAAAGTACTAATAATGTCTGTGATACTGAAACTGTTAC 497 consensus_7419#2 ------------------------------------------------------------ consensus_7419#1 ------------------------------------------------------------ consensus_7419#0 C 498 consensus_7419#2 - consensus_7419#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||