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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7429#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 861 fasta sequence
[CTCCAATAAATGAATCACGTAGTACTTGAGTTAATTTACTTGCACGAAAAGGTAGATGTGCACCACGCCGACCAAGAGCACGAATGCATTCTTTTAAAGCTAAAAGACTTTTATTAATTTCAGCACCTTCCATTCGAGTATGTCGATCAGAACTACTTGTATCCACACCACGTTCATTACCCGCCAAATCGATAAGTGAGAATTTACCATGAATTTCTCCCGTAGATTGTTTTTTTAAAATCAATTGAAAGACAGCATGGGAACGACTAGAATGTTGATTAGCTGATGTTTGACCACTAGTTCGAATATGTGCACCATGTTGTAGAAGTTTTAAAACACAATCAACTGAATTCACTTCTTCTTCACGTAATCCAACTATTTGTACTTGACCTTTAGCATCTTCCAGAACTCGAAGTTTGGCTTTTTTATTTAACAAATCAAAAACTTTCCCGCTGTATATTTCAAAAAATGTTGCAACAATTCGAAGATTCTCATTCCTATACGTAGTTGTATTCAAATTGAAGACATCAGCAGCTGCTAAGGCATAAATTCCATTAGAACAATTTTGTTGACCACGAGCATGGAATTCACCACCCATTGTATGCGTTTTTCCAGATCCTGTTTGGCCATAAGCAAAGCATGTGGCCATACCACGTTGAAATATACATTCCACTAAGGGTTTCGCAGTATACCGATACACAAGTTCATTATCCGATGTATCATCAAATGCATAATCAAAACGGAATTGTTGATTTTCAAGATATTTCGTTAGATCAACTTTAGTTTTTGGTTCATGGACAAGTACATGTTGTTTATTCGGGACTGTGATCACATCGATTTCACGACGACCAAGTTCTTTTT]
[-] EMBL CD154050 [CTCCAATAAATGAATCACGTAGTACTTGAGTTAATTTACTTGCACGAAAAGGTAGATGTGCACCACGCCGACCAAGAGCACGAATGCATTCTTTTAAAGCTAAAAGACTTTTATTAATTTCAGCACCTTCCATTCGAGTATGTCGATCAGAACTACTTGTATCCACACCACGTTCATTACCCGCCAAATCGATAAGTGAGAATTTACCATGAATTTCTCCCGTAGATTGTTTTTTTAAAATCAATTGAAAGACAGCATGGGAACGACTAGAATGTTGATTAGCTGATGTTTGACCACTAGTTCGAATATGTGCACCATGTTGTAGAAGTTTTAAAACACAATCAACTGAATTCACTTCTTCTTCACGTAATCCAACTATTTGTACTTGACCTTTAGCATCTTCCAGAACTCGAAGTTTGGCTTTTTTATTTAACAAATCAAAAACTTTCCCGCTGTATATTTCAAAAAA ]
[+] EMBL CD181870 [ GAATGCATTCTTTTAAAGCTAAAAGACTTTTATTAATTTCAGCACCTTCCATTCGAGTATGTCGATCAGAACTACTTGTATCCACACCACGTTCATTACCCGCCAAATCGATAAGTGAGAATTTACCATGAATTTTTCCCGTAGATTGTTTTTTTAAAATCAATTGAAAGACAGCATGGGAACGACTAGAATGTTGATTAGCTGATGTTTGACCACTAGTTCGAATATGTGCACCAT ]
[-] EMBL CD168635 [ CTTCTTCTTCACGTAATCCAACTATTTGTACTTGACCTTTAGCATCTTCCAGAACTCGAAGTTTGGCTTTTTTATTTAACAAATCAAAAACTTTCCCGCTGTATATTTCAAAAAATGTTGCAACAATTCGAAGATTCTCATTCCTATACGTAGTTGTATTCAAATTGAAGACATCAGCAGCTGCTAAGGCATAAATTCCATTAGAACAATTTTGTTGACCACGAGCATGGAATTCACCACCCATTGTATGCGTTTTTCCAGATCCTGTTTGGCCATAAGCAAAGCATGTGGCCATACCACGTTGAAATATACATTCCACTAAGGGTTTCGCAGTATACCGATACACAAGTTCATTATCCGATGTATCATCAAATGCATAATCAAAACGGAATTGTTGATTTTCAAGATATTTCGTTAGATCAACTTTAGTTTTTGGTTCATGGACAAGTACATGTTGTTTATTCGGGACTGTGATCACATCGATTTCACGACGACCAAGTTCTTTTT]
[+] EMBL CD195539 [ GGCATAAATTCCATTAGAACAATTTTGTTGACCACGAGCATGGAATTCACCACCCATTGTATGCGTTTTTCCAGATCCTGTTTGGCCATAAGCAAAGCATGTGGCCATACCACGTTGAAATATACATTCCACTAAGGGTTTCGCAGTATACCGATACACAAGTTCATTATCCGATGTATCATCAAATGCATAATCAAAACGGAATTGTTGATTTTCAAGATATTTCGTTAGATCAACTTTAGTTTTTGGTTCATGGACAAGTACATGTTGTTTATTCGGGACTGTGATCACATCGATTTCACGACGACCAAGTT ]
consensusID : consensus_7429#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence
[TTCGACAAGATATTTCCGCTTGTTCCTATATTAGTATTTGGAGGATTCCGAAAGTTGATTTGTGGAGTCACTGTGCTTCCAGCAACAGTACAGTTTGAACTACGAGATGATAACTGTGGTTGATTTGTGTTACCAGTTGCCGGTAGATCAGTATTACTGTTACTTGCTGACAAAGTTCCTGGTCCAAGTTCTTTCACCCTAAAAATAAAATATATTGCAAGGAAGTTTTTAAAAATAGCTAAATGGATATATATATTAAAACAAGGTGGTGACAATTCTTTGACAACAGTAAATCACATAAACATACGTACACACAGAGCATGAGAAGAATCTTACCGATCAGCGTAACGTAGTGTATTTAATGTATGTTCACAGCTGGACATACCAGGTGATATCATAGCAATCATACACGTTCGAGAACGATCTCCAATANATGAATCACGTAGTACTTGAGTTAATTTACTTGCACGAAAAGGTAGATGTGCACCACGCCGACCAAGAGCACGAATGCATTCCTACACACGTANAAAAAGAGAGAAACATTTCCAGCAAAAACACTTTTCGTTGAAATAAAATGTTTCATATGAAATTTCACTTAACAACATATCGAAGTGATCTGTAAAACCTAACAAAACATGCT]
[+] EMBL CD179166 [TTCGACAAGATATTTCCGCTTGTTCCTATATTAGTATTTGGAGGATTCCGAAAGTTGATTTGTGGAGTCACTGTGCTTCCAGCAACAGTACAGTTTGAACTACGAGATGATAACTGTGGTTGATTTGTGTTACCAGTTGCCGGTAGATCAGTATTACTGTTACTTGCTGACAAAGTTCCTGGTCCAAGTTCTTTCACCCTAAAAATAAAATATATTGCAAGGAAGTTTTTAAAAATAGCTAAATGGATATATATATTAAAACAAGGTGGTGACAATTCTTTGACAACAGTAAATCACATAAACATACGTACACACAGAGCATGAGAAGAATCTTACCGATCAGCGTAACGTAGTGTATTTAATGTATGTTCACAGCTGGACATACCAGGTGATATCATAGCAATCATACACGTTCGAGAACGATCTCCAATANATGAATCACGTAGTACTTGAGTTAATTTACTTGCACGAAAAGGTAGATGTGCACCACGCCGACCAAGAGCACGAATGCATTCCTACACACGTANAAAAAGAGAGAAACATTTCCAGCAAAAACACTTTTCGTTGAAATAAAATGTTTCATATGAAATTTCACTTAACAACATATCGAAGTGATCTGTAAAACCTAACAAAACATGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7429#0 CTCCAATAAATGAATCACGTAGTACTTGAGTTAATTTACTTGCACGAAAAGGTAGATGTG 60
consensus_7429#1 ------------------------------------------------------------
consensus_7429#0 CACCACGCCGACCAAGAGCACGAATGCATTCTTTTAAAGCTAAAAGACTTTTATTAATTT 120
consensus_7429#1 --------------------------------TTCGA---CAAGATATTTCCGCTTGTTC 25
** * ** * * ** * **
consensus_7429#0 CAGCACCTTCCATTCGAGTATGTCGATCAGAACTACTTGTATCCACACCACGTTCATTAC 180
consensus_7429#1 CTATATTAGTATTTGGAGGATTCCGA--AAGTTGATTTGTGGAGTCACTGTGCTT----- 78
* * ** *** ** *** * * **** *** * *
consensus_7429#0 CCGCCAAATCGATAAGTGAGAATTTACCATGAATTTCTCCCGTAGATTGTTTTTTTAAAA 240
consensus_7429#1 CCAGCAACAGTACAGTTTGAACTACGAGATGA-TAACTGTGGTTGATT-TGTGTTACCAG 136
** *** * * * * * **** * ** ** **** * * ** *
consensus_7429#0 TCAATTGAAAGACAGCATGGGAACGACTAGAATGTTGATTAGCTGATGTTTGACCACTAG 300
consensus_7429#1 TTGCCGGTAGATCAGTATTACTGTTACTTGCTGACAAAGTTCCTGGTCCAAGTTCTTTCA 196
* * * *** ** *** * * * *** * * * *
consensus_7429#0 TTCGAATATGTGCACCATGTTGTA--GAAGTTTTAAAACACAATCAACTGAATTCACTTC 358
consensus_7429#1 CCCTAAAA-ATAAAATATATTGCAAGGAAGTTTTTAAAAATAGCTAAATGGATATATATA 255
* ** * * * ** *** * ******** *** * * ** ** ** * *
consensus_7429#0 TTCTTCACGTAATCCAACTATTTGTACTTGACCTTTAGCATCTTCCAGAACTCGAAGTTT 418
consensus_7429#1 TTA-------AAACAAGGTGGTGACAATT---CTTTGACAACAGT-AAATCACATAAACA 304
** ** * * * * * ** **** ** * * * * * *
consensus_7429#0 GGCTTTTTTATTTAACAAATCAAAAACTTTCCCGCTGTATATTTCAAAAAATGTTGCAAC 478
consensus_7429#1 TACGTACACACAGAGCATGAGAAGAATCTTACCGATCAGCGTAACGTAGTGTATT----T 360
* * * * ** ** ** ** *** * * * * * **
consensus_7429#0 AATTCGAAGATTCTCATTCCTATACGTAGTTGTATTCAAATTGAAGACATCAGCAGCTGC 538
consensus_7429#1 AATGT----ATGTTCACAGCTGGACATACCAGG--TGATATCATAGCAATCA-TACACGT 413
*** ** *** ** ** ** * * * ** ** **** * *
consensus_7429#0 TAAGGCATAAATTCCATTAGAACAATTTTGTTGACCACGAGCATGGAATTCACCACCCAT 598
consensus_7429#1 TCGAGAACGATCTCCAATANATGAATCACGTAGTACTTGAGTT---AATTTACTTGCACG 470
* * * * **** ** * *** ** * * *** **** ** *
consensus_7429#0 TGTATGCGTTTTTCCAGATCCTGTTTGGCCATAAGCAAAGCATGTGGCCATAC-CACGTT 657
consensus_7429#1 AAAAGGTAGATGTGCA---CCACGCCGACCAAGAGCACGA-ATGCATTCCTACACACGTA 526
* * * * ** ** * *** **** *** * *** *****
consensus_7429#0 GAAATATACA----TTCCACTAAGGGTTTCGCAGTATACCGATACACAAGTTCATTATCC 713
consensus_7429#1 NAAAAAGAGAGAAACATTTCCAGCAAAAACACTTTTCGTTGAAATA-AAATGTTTCATAT 585
*** * * * * * * * * ** * * ** * * **
consensus_7429#0 GATGTATCATCAAATGCATAATCAAAACGGAATTGTTGATTTTCAAGATATTTCGTTAGA 773
consensus_7429#1 GAAATTTCACTTAACAACATATCGAAGTG-ATCTGTAAAACCTAACAAAACATGCT---- 640
** * *** ** *** ** * * *** * * * * * * *
consensus_7429#0 TCAACTTTAGTTTTTGGTTCATGGACAAGTACATGTTGTTTATTCGGGACTGTGATCACA 833
consensus_7429#1 ------------------------------------------------------------
consensus_7429#0 TCGATTTCACGACGACCAAGTTCTTTTT 861
consensus_7429#1 ----------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||