cluster # 7431

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Schistosoma mansoni
cluster # 7431 cluster # 7431 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7431#0 length = 675 sequences # 2

consensus_7431#1 length = 504 sequences # 3

consensusID : consensus_7431#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 675
fasta sequence

                              [TCGGTTGCCTAGGAAACAAAATTTTATTCGGAAGTTTGAAAATAAAAACAATTTAGATTTCCTACAAAAGTCAAGTAATCACTCAGTTGGGTTTAGTAATTTTTTCACGCCAATTAACTCTTGTTGCTATGAGACCAATAATGATTTACATCATAGTGAACATTCTGGATATCATCACTGTAGAGTTATACAACCCATCATAGGAACTGACAACCGTATTCGTAATAATCGTAGTCCACCGTTCTTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAAAACCAGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGAATTACTTTGTATGATTTGCGACCCTTCTATGCCGTTGCCAACATCTGGTTGTACTCAACATTTTTCCGGAAGATCTCTGTCTACTACAACTCCCCCTACTGCTTGTTTTAGCTCAGATATTACTGAAAGCTCTTATTTCCTGAAGCCCACTGGAAATTCAACTGTTGAAAATGTGCTGTTGTCAGCATTTCGTCTTCTAGCTTCCTTTTGTTTTTGGGGTGTTGAACCTGATATTGATGATGGGAAAGCTAATTCTTTAATTCCTCTCTATTCTACACCACGTTCGTTCTATGCTCTTATCTTGAATTTTTGGTG]

[+] EMBL CD196386             [TCGGTTGCCTAGGAAACAAAATTTTATTCGGAAGTTTGAAAATAAAAACAATTTAGATTTCCTACAAAAGTCAAGTAATCACTCAGTTGGGTTTAGTAATTTTTTCACGCCAATTAACTCTTGTTGCTATGAGACCAATAATGATTTACATCATAGTGAACATTCTGGATATCATCACTGTAGAGTTATACAACCCATCATAGGAACTGACAACCGTATTCGTAATAATCGTAGTCCACCGTTCTTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAAAACCAGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGAATTACTTTGTATGATTTGCGACCCTTCTATGCCGTTGCCAACATCTGGTTGTACTCAACATTTTTCCGGAAGATCTCTGTCTACT                                                                                                                                                                                                                                      ]
[+] EMBL CD124901             [                                                                                                                                                                                        GTTATACAACCCATCATAGGAACTGACAACCGTATTCGTAATAATCGTAGTCCACCGTTCTTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAAAACCAGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGAATTACTTTGTATGATTTGCGACCCTTCTATGCCGTTGCCAACATCTGGTTGTACTCAACATTTTTCCGGAAGATCTCTGTCTACTACAACTCCCCCTACTGCTTGTTTTAGCTCAGATATTACTGAAAGCTCTTATTTCCTGAAGCCCACTGGAAATTCAACTGTTGAAAATGTGCTGTTGTCAGCATTTCGTCTTCTAGCTTCCTTTTGTTTTTGGGGTGTTGAACCTGATATTGATGATGGGAAAGCTAATTCTTTAATTCCTCTCTATTCTACACCACGTTCGTTCTATGCTCTTATCTTGAATTTTTGGTG]




>consensus_7431#0
TCGGTTGCCTAGGAAACAAAATTTTATTCGGAAGTTTGAAAATAAAAACAATTTAGATTT
CCTACAAAAGTCAAGTAATCACTCAGTTGGGTTTAGTAATTTTTTCACGCCAATTAACTC
TTGTTGCTATGAGACCAATAATGATTTACATCATAGTGAACATTCTGGATATCATCACTG
TAGAGTTATACAACCCATCATAGGAACTGACAACCGTATTCGTAATAATCGTAGTCCACC
GTTCTTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAA
AACCAGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGA
ATTACTTTGTATGATTTGCGACCCTTCTATGCCGTTGCCAACATCTGGTTGTACTCAACA
TTTTTCCGGAAGATCTCTGTCTACTACAACTCCCCCTACTGCTTGTTTTAGCTCAGATAT
TACTGAAAGCTCTTATTTCCTGAAGCCCACTGGAAATTCAACTGTTGAAAATGTGCTGTT
GTCAGCATTTCGTCTTCTAGCTTCCTTTTGTTTTTGGGGTGTTGAACCTGATATTGATGA
TGGGAAAGCTAATTCTTTAATTCCTCTCTATTCTACACCACGTTCGTTCTATGCTCTTAT
CTTGAATTTTTGGTG

consensusID : consensus_7431#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 504
fasta sequence

                              [GTTATACAACCCATCATAGGAACTGACAACCGTATTCGTAATAATCGTAGTCCACCGTTCTTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAAAACCAGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGAATTACTTTGTATGATTTGCGACCCTTCTATGCCGTTGCCAACATCTGGTTGTACTCAACATTTTTCCGGAAGATCTCTGTCTACTACAACTCCCCCTACTGCTTGTTTTAGCTCAGATATTACTGAAAGCTCTTATTTCCTGAAGCCCACTGGAAATTCAACTGTTGAAAATGTGCTGTTGTCAGCATTTCGTCTTCTAGCTTCCTTTTGTTTTTGGGGTGTTGAACCTGATATTGATGATGGGAAAGCTAATTCTTTAATTCCTCTCTATTCTACACCACGTTCGTTCCATAATTTTGGGAAGATTTCCTATCCTGTTGCATATTGT]

[+] EMBL CD125022             [GTTATACAACCCATCATAGGAACTGACAACCGTATTCGTAATAATCGTAGTCCACCGTTCTTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAAAACCAGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGAATTACTTTGTATGATTTGCGACCCTTCTATGCCGTTGCCAACATCTGGTTGTACTCAACATTTTTCCGGAAGATCTCTGTCTACTACAACTCCCCCTACTGCTTGTTTTAGCTCAGATATTACTGAAAGCTCTTATTTCCTGAAGCCCACTGGAAATTCAACTGTTGAAAATGTGCTGTTGTCAGCATTTCGTCTTCTAGCTTCCTTTTGTTTTTGGGGTGTTGAACCTGATATTGATGATGGGAAAGCTAATTCTTTAATTCCTCTCTATTCTACACCACGTTCGTTCCATAATTTTGGG                           ]
[-] EMBL CD124924             [ TTATACAACCCATCATAGGAACTGACAACCGTATTCGTAATAATCGTAGTCCACCGTTCTTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAAAACCAGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGAATTACTTTGTATGATTTGCGACCCTTATATGCCGTTGCCAACATCTGGTTGTACTCAACATTTTTCCGGAAGATCTCTGTCTACTACAACTCCCCCTACTGCTTGTTTTAGCTCAGATATTACTGAAAGCTCTTATTTCCTGAAGCCCACTGGAAATTCAACTGTTGAAAATGTGCTGTTGTCAGCATTTCGTCTTCTAGCTTCCTTTTGTTTTTGGGGTGTTGAACCTGATATTGATGATGGGAAAGCTAATTCTTTAATTCCTCTCTATTCTACACCACGTTCGTTCCATAATTTTGGGA                          ]
[+] EMBL CD132981             [                           AACCGTATTCGTAATAATAGTAGTCCACCGTTCTTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAAAACCAGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGAATTACTTTGTATGATTTGCGACCCTTCTATGCCGTTGCCAACATCTGGTTGTACTCAACATTTTTCCGGAAGATCTCTGTCTACTACAACTCCCCCTACTGCTTGTTTTAGCTCAGATATTACTGAAAGCTCTTATTTCCTGAAGCCCACTGGAAATTCAACTGTTGAAAATGTGCTGTTGTCTGCATTTCGTCTTCTAGCTTCCTTTTGTTTTTGGGGTGTTGAACCTGATATTGATGATGGGAAAGCTAATTCTTTAATTCCTCTCTATTCTACACCACGTTCGTCCCATAATTTTGGGAAGATTTCCTATCCTGTTGCATATTGT]




>consensus_7431#1
GTTATACAACCCATCATAGGAACTGACAACCGTATTCGTAATAATCGTAGTCCACCGTTC
TTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAAAACC
AGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGAATTA
CTTTGTATGATTTGCGACCCTTCTATGCCGTTGCCAACATCTGGTTGTACTCAACATTTT
TCCGGAAGATCTCTGTCTACTACAACTCCCCCTACTGCTTGTTTTAGCTCAGATATTACT
GAAAGCTCTTATTTCCTGAAGCCCACTGGAAATTCAACTGTTGAAAATGTGCTGTTGTCA
GCATTTCGTCTTCTAGCTTCCTTTTGTTTTTGGGGTGTTGAACCTGATATTGATGATGGG
AAAGCTAATTCTTTAATTCCTCTCTATTCTACACCACGTTCGTTCCATAATTTTGGGAAG
ATTTCCTATCCTGTTGCATATTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7431#0      TCGGTTGCCTAGGAAACAAAATTTTATTCGGAAGTTTGAAAATAAAAACAATTTAGATTT 60
consensus_7431#1      ------------------------------------------------------------
                                                                                  

consensus_7431#0      CCTACAAAAGTCAAGTAATCACTCAGTTGGGTTTAGTAATTTTTTCACGCCAATTAACTC 120
consensus_7431#1      ------------------------------------------------------------
                                                                                  

consensus_7431#0      TTGTTGCTATGAGACCAATAATGATTTACATCATAGTGAACATTCTGGATATCATCACTG 180
consensus_7431#1      ------------------------------------------------------------
                                                                                  

consensus_7431#0      TAGAGTTATACAACCCATCATAGGAACTGACAACCGTATTCGTAATAATCGTAGTCCACC 240
consensus_7431#1      ----GTTATACAACCCATCATAGGAACTGACAACCGTATTCGTAATAATCGTAGTCCACC 56
                          ********************************************************

consensus_7431#0      GTTCTTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAA 300
consensus_7431#1      GTTCTTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAA 116
                      ************************************************************

consensus_7431#0      AACCAGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGA 360
consensus_7431#1      AACCAGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGA 176
                      ************************************************************

consensus_7431#0      ATTACTTTGTATGATTTGCGACCCTTCTATGCCGTTGCCAACATCTGGTTGTACTCAACA 420
consensus_7431#1      ATTACTTTGTATGATTTGCGACCCTTCTATGCCGTTGCCAACATCTGGTTGTACTCAACA 236
                      ************************************************************

consensus_7431#0      TTTTTCCGGAAGATCTCTGTCTACTACAACTCCCCCTACTGCTTGTTTTAGCTCAGATAT 480
consensus_7431#1      TTTTTCCGGAAGATCTCTGTCTACTACAACTCCCCCTACTGCTTGTTTTAGCTCAGATAT 296
                      ************************************************************

consensus_7431#0      TACTGAAAGCTCTTATTTCCTGAAGCCCACTGGAAATTCAACTGTTGAAAATGTGCTGTT 540
consensus_7431#1      TACTGAAAGCTCTTATTTCCTGAAGCCCACTGGAAATTCAACTGTTGAAAATGTGCTGTT 356
                      ************************************************************

consensus_7431#0      GTCAGCATTTCGTCTTCTAGCTTCCTTTTGTTTTTGGGGTGTTGAACCTGATATTGATGA 600
consensus_7431#1      GTCAGCATTTCGTCTTCTAGCTTCCTTTTGTTTTTGGGGTGTTGAACCTGATATTGATGA 416
                      ************************************************************

consensus_7431#0      TGGGAAAGCTAATTCTTTAATTCCTCTCTATTCTACACCACGTTCGTTCTATGCTCTTAT 660
consensus_7431#1      TGGGAAAGCTAATTCTTTAATTCCTCTCTATTCTACACCACGTTCGTTCCATAATTTTGG 476
                      ************************************************* **  * **  

consensus_7431#0      CTTGAATTTTTGGTG------------- 675
consensus_7431#1      GAAGATTTCCTATCCTGTTGCATATTGT 504
                         ** **  *