These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7434#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1011 fasta sequence [AGGCCAGAATTCGGCACGAGGTCTGAATCCATTTAGCATCTATACAATCAGATGAAGAATGGAAAATGTTATCAAAATGTTTTGGGGATAACAGTTTAACTAAAATATGGCTAGGAGGGACGGCAGACCTCGTGAATCATCAGTATATCGTTTTACAATGGTTTGATAAAACAGCTTTCAAATTCCTCCGGTTCCCAGATACAGAGAGGGGTCACTGGCAGCAAATCCTGAAGAACCGCCAGGGTTGTATCATTGGTAACTTGAAAAACAATGGCCAAGGAGAATGGAGCATTCAAGCTATGTCATGTGATGAACCGAAAGAGTTCATTTGCAAAGAAACAAATTCAGATTTCCAAAATAAACCATGGGATACTGAAAGGTCAAGACTTGTTTATATGCCTCAAGAAACACCGTTCCAACACTTTAATCAACCCCCAGTCGGTATTCTTTCATTGCATGGAGATATGTATCAACCGAAAATACCAACAGGTCCAAAGAAGTCAATTATTGCTCATGTATCTAATGTACAGACAGTAATACCGACAACAGATAGCACAGAACAACAAGTGCACCCAACTCCACCAGTTCAGCCCAAAATCAATAACAACACAATCACGAGGATCAATATTAGTGAGTCCAAACATTTCATAAAACCAACAAAAAAACCAAATAACATGACTGA-ACTACAAGCAACTACAATAAGTAGATTCGCAAATAAGAATGTGAAATTTGTTATCATCAAATCAGATGAGCCTAAAACAGTGCCCAAAGAAAGTAACAATGAAATAAAGTCGGAGCAAGGTAAAGAAACAAGTCCAGAAAACCAATCTGGACCCGTTACAATTTATCTTCAGGGTGTTTCCGTTCCAGGAAACGAGTTTAAGGAAGGGGCCCAATAATTTTTTTTCTTCCACCTGTTGATCGTTAACAATTAAACTGTGTGATTATGAATACTGTTTAGATGGGATTGGTTTAAATTGAATGTTTACTACGTGATTGGTAAATAAAGAT] [+] EMBL CD079908 [AGGCCAGAATTCGGCACGAGGTCTGAATCCATTTAGCATCTATACAATCAGATGAAGAATGGAAAATGTTATCAAAATGTTTTGGGGATAACAGTTTAACTAAAATATGGCTAGGAGGGACGGCAGACCTCGTGAATCATCAGTATATCGTTTTACAATGGTTTGATAAAACAGCTTTCAAATTCCTCCGGTTCCCAGATACAGAGAGGGGTCACTGGCAGCAAATCCTGAAGAACCGCCAGGGTTGTATCATTGGTAACTTGAAAAACAATGGCCAAGGAGAATGGAGCATTCAAGCTATGTCATGTGATGAACCGAAAGAGTTCATTTGCAAAGAAACAAATTCAGATTTCCAAAATAAACCATGGGATACTGAAAGGTCAAGACTTGTTTATATGCCTCAAGAAACACCGTTCCAACACTTTAATCAACCCCCAGTCGGTATTCTTTCATTGCATGGAGATATGTATCAACCGAAAATACCAACAGGTCCAAAGAAGTCAATTATTGCTCATGTATCTAATGTACAGACAGTAATACCGACAACAGATAGCACAGAACAACAAGTGCACCCAACTCCACCAGTTCAGCCCAAAATCAATAACAACACAATCACGAGGATCAATATTAGTGAGTCCAAACATTTCATAAAACCAACAAAAAAACCAAATAACATGACTGANACTACAGNNCACTAC ATAAGTAG ] [+] EMBL CD082862 [ AATGGAGCATTCAAGCTATGTCATGTGATGAACCGAAAGAGTTCATTTGCAAAGAAACAAATTCAGATTTCCAAAATAAACCATGGGATACTGAAAGGTCAAGACTTGTTTATATGCCTCAAGAAACACCGTTCCAACACTTTAATCAACCCCCAGTCGGTATTCTTTCATTGCATGGAGATATGTATCAACCGAAAATACCAACAGGTCCGAAGAAGTCAATAATTGCTCATGTATCTAATGTACAGACAGTAATACCGACAACAGATAGCACAGAACAACAAGTGTACCCAACTCCACCAGTTCAGCCCAAAATCAATAACAACACAATCACGAGGATCAATATTAGTGAGTCCAAACATTTCATAAAACCAACAAAAAAACCAAATAACATGACTGA ACTACAAGCAACTACAATAAGTAGATTCGCAAATAAGAATGTGAAATTTGTTATCATCAAATCAGATGAGCCTAAAACAGTGCCCAAAGAAAGTAACAATGAAATAAAGTCGGAGCAAGGTAAAGAAACAAGTCCAGAAAACCAATCTGGACCCGTTACAATTTATCTTCAGGGTGTTTCCGTTCCAGGAAACGAGTTTAAGGAAn ] [-] EMBL CD076448 [ GACTTGTTTATATGCCTCAAGAAACACCGTTCCAACACTTTAATCAACCCCCAGTCGGTATTCTTTCATTGCATGGAGATATGTATCAACCGAAAATACCAACAGGTCCGAAGAAGTCAATAATTGCTCATGTATCTAATGTACAGACAGTAATACCGACAACAGATAGCACAGAACAACAAGTGTACCCAACTCCACCAGTTCAGCCCAAAATCAATAACAACACAATCACGAGGATCAATATTAGTGAGTCCAAACATTTCATAAAACCAACAAAAAAACCAAATAACATGACTGA ACTACAAGCAACTACAATAAGTAGATTCGCAAATAAGAATGTGAAATTTGTTATCATCAAATCAGATGAGCCTAAAACAGTGCCCAAAGAAAGTAACAATGAAATAAAGTCGGAGCAAGGTAAAGAAACAAGTCCAGAAAACCAATCTGGACCCGTTACAATTTATCTTCAGGGTGTTTCCGTTCCAGGAAACGAGTTTAAGGAAGGGGCCCAATAATTTTTTTTCTTCCACCTGTTGATCGTTAACAATTAAACTGTGTGATTATGAATACTGTTTAGATGGGATTGGTTTAAATTGAATGTTTACTACGTGATTGGTAAATAAAGAT] [-] EMBL CD074105 [ TTGTTTATATGCNTCAAGAAACACCGTTCCAACACTTTAATCAACCCCCAGTCGGTATTCTTTCATTGCATGGAGATATGTATCAACCGAAAATACCAACAGGTCCAAAGAAGTCAATTATTGCTCATGTATCTAATGTACAGACAGTAATACCGACAACAGATAGCACAGAACAACAAGTGCACCCAACTCCACCAGTTCAGCCCAAAATCAATAACAACACAATCACGAGGATCAATATTAGTGAGTCCAAACATTTCATAAAACCAACAAAAAAACCAAATAACATGACTGA ACTACAAGCAACTACAATAAGTAGATTCGCAAATAAGAATGTGAAATTTGTTATAATCAAATCAGATGAGCCAAAAACAGTGCCCAAAGAAAGTAACAATGAAATAAAGTCGGAGCAAGGTAAAGAAACGAGTCCAGAAAACCAATCTGGACCCGTTACAATTTATCTTCAGGGTGTTTCTGTTCCAGGAAACGAGTTTAAGGAAGGGGCCCAATAATTTTTTTTCTTCCACCTGTTGATCGTTAACAATTAAACTGTGTGATTATGAATACTGTTTAGATGGGATTGGTTTAAATTTAATGTTTACTAGGTGATTGGTAAATAAAGAT] consensusID : consensus_7434#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence [ATACAATAAGTAGTTTAATACTATTACTAAGTCAAATATTATATATTACATGTATTTGGCATCCATCTAATTATCCAGTACATAATAAATATCCATATCAATTCAATACTTATTATCCAGCAAGAAAATATAATGAAGAACAACCTATGGTAGAACAAGTTAAAACAGTTAAATATCATGGTAATACATATAGACAAGTAATGGGTTTGAAATTACCATTTCATCAAGCTGAAAACTATTGTAATCAAGTATTTACATCTGAATCACATTTAGCATCTATACAATCAGATGAAGAATGGAAAATGTTATCAAAATGTTTTGGGGATAACAGTTTAACTAAAATATGGCTAGGAGGGACGGCAGACCTGGTGAATCATCAGTATATCGTTTTACAATGGTT] [+] EMBL AI975134 [ATACAATAAGTAGTTTAATACTATTACTAAGTCAAATATTATATATTACATGTATTTGGCATCCATCTAATTATCCAGTACATAATAAATATCCATATCAATTCAATACTTATTATCCAGCAAGAAAATATAATGAAGAACAACCTATGGTAGAACAAGTTAAAACAGTTAAATATCATGGTAATACATATAGACAAGTAATGGGTTTGAAATTACCATTTCATCAAGCTGAAAACTATTGTAATCAAGTATTTACATCTGAATCACATTTAGCATCTATACAATCAGATGAAGAATGGAAAATGTTATCAAAATGTTTTGGGGATAACAGTTTAACTAAAATATGGCTAGGAGGGACGGCAGACCTGGTGAATCATCAGTATATCGTTTTACAATGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7434#0 AGGCCAGAATTCGGCACGAGGTCTGAATCCATTTAGCATCTATACAATCAGATGAAGAAT 60 consensus_7434#1 ------------------------------------------------------------ consensus_7434#0 GGAAAATGTTATCAAAATGTTTTGGGGATAACAGTTTAACTAAAATATGGCTAGGAGGGA 120 consensus_7434#1 ------------------------------------------------------------ consensus_7434#0 CGGCAGACCTCGTGAATCATCAGTATATCGTTTTACAATGGTTTGATAAAACAGCTTTCA 180 consensus_7434#1 ------------------------------------------------------------ consensus_7434#0 AATTCCTCCGGTTCCCAGATACAGAGAGGGGTCACTGGCAGCAAATCCTGAAGAACCGCC 240 consensus_7434#1 ------------------------------------------------------------ consensus_7434#0 AGGGTTGTATCATTGGTAACTTGAAAAACAATGGCCAAGGAGAATGGAGCATTCAAGCTA 300 consensus_7434#1 ------------------------------------------------------------ consensus_7434#0 TGTCATGTGATGAACCGAAAGAGTTCATTTGCAAAGAAACAAATTCAGATTTCCAAAATA 360 consensus_7434#1 ------------------------------------------------------------ consensus_7434#0 AACCATGGGATACTGAAAGGTCAAGACTTGTTTATATGCCTCAAGAAACACCGTTCCAAC 420 consensus_7434#1 -----------------------------------------------ATACAATA--AGT 11 * ** * * consensus_7434#0 ACTTTAAT--CAACCCCCAGTCGGTATTCTTTCATTGCATGGAGATATGTATCAACCGAA 478 consensus_7434#1 AGTTTAATACTATTACTAAGTCAAATATTATATATTACATGTATTTG-GCATCCATCTAA 70 * ****** * * **** * * *** **** * * * *** * * ** consensus_7434#0 AATACCAACAGGTCCAAAGAAGTCAATTATTGCTCATGTATCTAATGTACAGACAGTAAT 538 consensus_7434#1 TTATCCAGTACATAATAAATATCCA--TATCAATTCAATACTTATTATCCAG-------- 120 *** * * ** * ** *** * ** ** * * *** consensus_7434#0 ACCGACAACAGATAGCACAGAACAACAAGTGCACCCAACTCCACCAGTTCAGCCCAAAAT 598 consensus_7434#1 --CAAGAAAATATAATGAAGAACAAC--CTATGGTAGAACAAGTTAAAACAGTTAAATAT 176 * * ** * *** ******** * * * *** ** ** consensus_7434#0 CAATAACAACACAATCACGAGGATCAATATTAGTGAGTCCAAACATTTCATAAAACCAAC 658 consensus_7434#1 CA-TGGTAATACATATA-GACAAGTAATGGGTTTGAAATTAC-CATTTCATCAAGCTGA- 232 ** * ** *** * ** * *** *** * ******** ** * * consensus_7434#0 AAAAAAACCAAATAACATGACTGAACTACAAGCAACTACAATAAGTAGATTCGCAAATAA 718 consensus_7434#1 AAACTATTGTAATCAAGTATTTACATCTGAATCACATTTAGCATCTATACAATCAGATGA 292 *** * *** * * * * ** ** * * * ** * ** ** * consensus_7434#0 GAATGTGAAATTTGTTATCATCAAATCAGATGAGCCTAAAACAGTGCCCAAAGAAAGTAA 778 consensus_7434#1 AGA-ATGGAAAATGTTATCA--AAATGTTTTGGG--GATAACAGTTTAACTAAAATATGG 347 * ** ** ******** **** ** * * ****** * ** * consensus_7434#0 CAATGAAATAAAGTCGGAGCAAGGTAAAGAAACAAGTCCAGAAAACCAATCTGGACCCGT 838 consensus_7434#1 CTA-GGAGGGACGGCAGACC----TGGTGAATCA---TCAGTATATCGTTTTACAATGGT 399 * * * * * * * ** * * *** ** *** * * * * * * ** consensus_7434#0 TACAATTTATCTTCAGGGTGTTTCCGTTCCAGGAAACGAGTTTAAGGAAGGGGCCCAATA 898 consensus_7434#1 T----------------------------------------------------------- 400 * consensus_7434#0 ATTTTTTTTCTTCCACCTGTTGATCGTTAACAATTAAACTGTGTGATTATGAATACTGTT 958 consensus_7434#1 ------------------------------------------------------------ consensus_7434#0 TAGATGGGATTGGTTTAAATTGAATGTTTACTACGTGATTGGTAAATAAAGAT 1011 consensus_7434#1 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||