These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7439#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 847 fasta sequence [GCAAGTTACCAGATTACAAACAAATGGATGTATTA-CAATCCCTTAAAAACTTTAGCGGAAGGTTTTATGGAGATATAGTAGAAGAAAAACAGAGTCATTCGGAGAATACTTTTCTCTCTCCCTTTAATGTATACACTGCCCTGGGAATGATCCTTTCTGGCAGTGAAATGAATACAAAAGCAGAGATAATGAAAGTGATGCACTTATCTAATTGTTTGGAACATCATGCAATTCACTATGGAATCAGTGGACTTCTGTTTGACTGTTCAGAACGTGGTGAAGGTGTTGAGATAATGTTTGGGAACGGATTGTTTACAGCAGAAGATGTGAATGTTAAAGAAGATTATCAAAATACTCTTAA-GAGTTATTACAACGCACAAACGGAATCTGTGGCGTTTCAGATGGATCCCGAAGATGCTGGAAAACGAATAAACCAATGGGCTAGTTCACTGACCAAAGGAAAAATTCAAGAACTCTTTTCGTCTCAATCACTATCAACCGACACATCAGTTTTGGTAATAACCACTACATATTTCGAANGTATGTGGGATCTACCTTTTCTTCAAGGAAGTTCACACGAAAGCGACTTCTTTAAGCTTGACGGGTCAACGATGAACGTGAAGTTAATGTATATGAATTCCTCATTTGACATGACCAGTTTACCAGATTTGAAATCACGTGCTATTAAGATACCATTTAAAAATCCTAAATTCTCGTTATTGATCGTTCTTCCAACGCCAATGATGGATTACTTGAGTTACTAGATGCATTACATAGAGATGATGGNATTTCATCGATCCTTCCTCCTACTTTAAGGATACAGTTTGCATTGTNCTTACCAAATTCA] [+] EMBL AF030970 [GCAAGTTACCAGATTACAAACAAATGGATGTATTA CAATCCCTTAAAAACTTTAGCGGAAGGTTTTATGGAGATATAGTAGAAGAAAAACAGAGTCATTCGGAGAATACTTTTCTCTCTCCCTTTAATGTATACACTGCCCTGGGAATGATCCTTTCTGGCAGTGAAATGAATACAAAAGCAGAGATAATGAAAGTGATGCACTTATCTAATTGTTTGGAACATCATGCAATTCACTATGGAATCAGTGGACTTCTGTTTGACTGTTCAGAACGTGGTGAAGGTGTTGAGATAATGTTTGGGAACGGATTGTTTACAGCAGAAGATGTGAATGTTAAAGAAGATTATCAAAATACTCTTAA GAGTTATTACAACGCACAAACGGAATCTGTGGCGTTTCAGATGGATCCCGAAGATGCTGGAAAACGAATAAACCAATGGGCTAGTTCACTGACCAAAGGAAAAATTCAAGAACTCTTTTCGTCTCAATCACTATCAACCGACACATCAGTTTTGGTAATAACCACTACATATTTCGAANGTATGTGGGATCTACCTTTTCTTCAAGGAAGTTCACACGAAAGCGACTTCTTTAAGCTTGACGGGTCAACGATGAACGTGAAGTTAATGTATATGAATTCCTCATTTGACATGACCAGTTTACCAGATTTGAAATCACGTGCTATTAAGATACCATTTAAAAATCCTAAATTCTCGTTATTGATCGTTCTTCCAACGCCAATGATGGATTACTTGAGTTACTAGATGCATTACATAGAGATGATGGNATTTCATCGATCCTTCCTCCTACTTTAAGGATACAGTTTGCATTGTNCTTACCAAATTCA] [+] EMBL CD077889 [ gaggCAGATTACAAACAAATGGATGTATTAGCAATCCCTTAAAAACTTTAGCGGAAGGTTTTATGGAGATATAGTAGAAGAAAAACAGAGTCATTCGGAGAATACTTTTCTCTCTCCCTTTAATGTATACACTGCCCTGGGAATGATCCTTTCTGGCAGTGAAATGAATACAAAAGCAGAGATAATGAAAGTGATGCACTTATCTAATTGTTTGGAACATCATGCAATTCACTATGGAATCAGTGGACTTCTGTTTGACTGTTCAGAACGTGGTGAAGGT ] [+] EMBL BF936290 [ AAGGTTTTATGGAGATATAGTAGAAGAAAAACAGAGTCATTCGGAGAATACTTTTCTCTCTCCCTTTAATGTATACACTGCCCTGGGAATGATCCTTTCTGGCAGGGAAATGAATACAAAAGCAGAGATAATGAAAGTGATGCACTTATCTAATTGTTTGGAACATCATGCAATTCACTATGGAATCAGTGGACTTCTGTTTGACTGTTCATAACGTGGTGAAGGTGTTGAGAT ] [+] EMBL AA559560 [ ATGTNAAAGAANATTATCAAAATACNCTTAAGGAGTTATTACAACGCACAANCGGAATCTGTGGCGTTTCANATGGATCCCGAAGATGCTGGAAAACGAATAAACCANTGGGCTANTTCACTG ] consensusID : consensus_7439#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 207 fasta sequence [CTCGACGCCAAAAATTCGGCACGAGGTGGTTTGGTGTTTACGCATATCGGGTGCTGGTTTTTTTTCTTGTCCTAGAGATTACAAACAAATGGATGTATTACAATCCCTTANAAACTTTAGCGGAAAGTTTTATGGAGATATAGTAGAAGAAAACAGAGTCATTCGGAGATACTTTTCTCTCTCCTTTAATGATACACTGCCCCTGGA] [+] EMBL CD077575 [CTCGACGCCAAAAATTCGGCACGAGGTGGTTTGGTGTTTACGCATATCGGGTGCTGGTTTTTTTTCTTGTCCTAGAGATTACAAACAAATGGATGTATTACAATCCCTTANAAACTTTAGCGGAAAGTTTTATGGAGATATAGTAGAAGAAAACAGAGTCATTCGGAGATACTTTTCTCTCTCCTTTAATGATACACTGCCCCTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7439#0 ------------------------------------------------------------ consensus_7439#1 CTCGACGCCAAAAATTCGGCACGAGGTGGTTTGGTGTTTACGCATATCGGGTGCTGGTTT 60 consensus_7439#0 ----GCAAGTTACC-AGATTACAAACAAATGGATGTATTACAATCCCTTAAAAACTTTAG 55 consensus_7439#1 TTTTTCTTGTCCTAGAGATTACAAACAAATGGATGTATTACAATCCCTTANAAACTTTAG 120 * ** *********************************** ********* consensus_7439#0 CGGAAGGTTTTATGGAGATATAGTAGAAGAAAAACAGAGTCATTCGGAGAATACTTTTCT 115 consensus_7439#1 CGGAAAGTTTTATGGAGATATAGTAGAAGAAAA-CAGAGTCATTCGGAGA-TACTTTTCT 178 ***** *************************** **************** ********* consensus_7439#0 CTCTCCCTTTAATGTATACACTGCCCTGGGAATGATCCTTTCTGGCAGTGAAATGAATAC 175 consensus_7439#1 CTCTCC-TTTAATG-ATACACTGCCCCTGGA----------------------------- 207 ****** ******* *********** *** consensus_7439#0 AAAAGCAGAGATAATGAAAGTGATGCACTTATCTAATTGTTTGGAACATCATGCAATTCA 235 consensus_7439#1 ------------------------------------------------------------ consensus_7439#0 CTATGGAATCAGTGGACTTCTGTTTGACTGTTCAGAACGTGGTGAAGGTGTTGAGATAAT 295 consensus_7439#1 ------------------------------------------------------------ consensus_7439#0 GTTTGGGAACGGATTGTTTACAGCAGAAGATGTGAATGTTAAAGAAGATTATCAAAATAC 355 consensus_7439#1 ------------------------------------------------------------ consensus_7439#0 TCTTAAGAGTTATTACAACGCACAAACGGAATCTGTGGCGTTTCAGATGGATCCCGAAGA 415 consensus_7439#1 ------------------------------------------------------------ consensus_7439#0 TGCTGGAAAACGAATAAACCAATGGGCTAGTTCACTGACCAAAGGAAAAATTCAAGAACT 475 consensus_7439#1 ------------------------------------------------------------ consensus_7439#0 CTTTTCGTCTCAATCACTATCAACCGACACATCAGTTTTGGTAATAACCACTACATATTT 535 consensus_7439#1 ------------------------------------------------------------ consensus_7439#0 CGAANGTATGTGGGATCTACCTTTTCTTCAAGGAAGTTCACACGAAAGCGACTTCTTTAA 595 consensus_7439#1 ------------------------------------------------------------ consensus_7439#0 GCTTGACGGGTCAACGATGAACGTGAAGTTAATGTATATGAATTCCTCATTTGACATGAC 655 consensus_7439#1 ------------------------------------------------------------ consensus_7439#0 CAGTTTACCAGATTTGAAATCACGTGCTATTAAGATACCATTTAAAAATCCTAAATTCTC 715 consensus_7439#1 ------------------------------------------------------------ consensus_7439#0 GTTATTGATCGTTCTTCCAACGCCAATGATGGATTACTTGAGTTACTAGATGCATTACAT 775 consensus_7439#1 ------------------------------------------------------------ consensus_7439#0 AGAGATGATGGNATTTCATCGATCCTTCCTCCTACTTTAAGGATACAGTTTGCATTGTNC 835 consensus_7439#1 ------------------------------------------------------------ consensus_7439#0 TTACCAAATTCA 847 consensus_7439#1 ------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||