cluster # 7439

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7439 cluster # 7439 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7439#0 length = 847 sequences # 4

consensus_7439#1 length = 207 sequences # 1

consensusID : consensus_7439#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 847
fasta sequence

                              [GCAAGTTACCAGATTACAAACAAATGGATGTATTA-CAATCCCTTAAAAACTTTAGCGGAAGGTTTTATGGAGATATAGTAGAAGAAAAACAGAGTCATTCGGAGAATACTTTTCTCTCTCCCTTTAATGTATACACTGCCCTGGGAATGATCCTTTCTGGCAGTGAAATGAATACAAAAGCAGAGATAATGAAAGTGATGCACTTATCTAATTGTTTGGAACATCATGCAATTCACTATGGAATCAGTGGACTTCTGTTTGACTGTTCAGAACGTGGTGAAGGTGTTGAGATAATGTTTGGGAACGGATTGTTTACAGCAGAAGATGTGAATGTTAAAGAAGATTATCAAAATACTCTTAA-GAGTTATTACAACGCACAAACGGAATCTGTGGCGTTTCAGATGGATCCCGAAGATGCTGGAAAACGAATAAACCAATGGGCTAGTTCACTGACCAAAGGAAAAATTCAAGAACTCTTTTCGTCTCAATCACTATCAACCGACACATCAGTTTTGGTAATAACCACTACATATTTCGAANGTATGTGGGATCTACCTTTTCTTCAAGGAAGTTCACACGAAAGCGACTTCTTTAAGCTTGACGGGTCAACGATGAACGTGAAGTTAATGTATATGAATTCCTCATTTGACATGACCAGTTTACCAGATTTGAAATCACGTGCTATTAAGATACCATTTAAAAATCCTAAATTCTCGTTATTGATCGTTCTTCCAACGCCAATGATGGATTACTTGAGTTACTAGATGCATTACATAGAGATGATGGNATTTCATCGATCCTTCCTCCTACTTTAAGGATACAGTTTGCATTGTNCTTACCAAATTCA]

[+] EMBL AF030970             [GCAAGTTACCAGATTACAAACAAATGGATGTATTA CAATCCCTTAAAAACTTTAGCGGAAGGTTTTATGGAGATATAGTAGAAGAAAAACAGAGTCATTCGGAGAATACTTTTCTCTCTCCCTTTAATGTATACACTGCCCTGGGAATGATCCTTTCTGGCAGTGAAATGAATACAAAAGCAGAGATAATGAAAGTGATGCACTTATCTAATTGTTTGGAACATCATGCAATTCACTATGGAATCAGTGGACTTCTGTTTGACTGTTCAGAACGTGGTGAAGGTGTTGAGATAATGTTTGGGAACGGATTGTTTACAGCAGAAGATGTGAATGTTAAAGAAGATTATCAAAATACTCTTAA GAGTTATTACAACGCACAAACGGAATCTGTGGCGTTTCAGATGGATCCCGAAGATGCTGGAAAACGAATAAACCAATGGGCTAGTTCACTGACCAAAGGAAAAATTCAAGAACTCTTTTCGTCTCAATCACTATCAACCGACACATCAGTTTTGGTAATAACCACTACATATTTCGAANGTATGTGGGATCTACCTTTTCTTCAAGGAAGTTCACACGAAAGCGACTTCTTTAAGCTTGACGGGTCAACGATGAACGTGAAGTTAATGTATATGAATTCCTCATTTGACATGACCAGTTTACCAGATTTGAAATCACGTGCTATTAAGATACCATTTAAAAATCCTAAATTCTCGTTATTGATCGTTCTTCCAACGCCAATGATGGATTACTTGAGTTACTAGATGCATTACATAGAGATGATGGNATTTCATCGATCCTTCCTCCTACTTTAAGGATACAGTTTGCATTGTNCTTACCAAATTCA]
[+] EMBL CD077889             [     gaggCAGATTACAAACAAATGGATGTATTAGCAATCCCTTAAAAACTTTAGCGGAAGGTTTTATGGAGATATAGTAGAAGAAAAACAGAGTCATTCGGAGAATACTTTTCTCTCTCCCTTTAATGTATACACTGCCCTGGGAATGATCCTTTCTGGCAGTGAAATGAATACAAAAGCAGAGATAATGAAAGTGATGCACTTATCTAATTGTTTGGAACATCATGCAATTCACTATGGAATCAGTGGACTTCTGTTTGACTGTTCAGAACGTGGTGAAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BF936290             [                                                           AAGGTTTTATGGAGATATAGTAGAAGAAAAACAGAGTCATTCGGAGAATACTTTTCTCTCTCCCTTTAATGTATACACTGCCCTGGGAATGATCCTTTCTGGCAGGGAAATGAATACAAAAGCAGAGATAATGAAAGTGATGCACTTATCTAATTGTTTGGAACATCATGCAATTCACTATGGAATCAGTGGACTTCTGTTTGACTGTTCATAACGTGGTGAAGGTGTTGAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AA559560             [                                                                                                                                                                                                                                                                                                                                           ATGTNAAAGAANATTATCAAAATACNCTTAAGGAGTTATTACAACGCACAANCGGAATCTGTGGCGTTTCANATGGATCCCGAAGATGCTGGAAAACGAATAAACCANTGGGCTANTTCACTG                                                                                                                                                                                                                                                                                                                                                                                                           ]




>consensus_7439#0
GCAAGTTACCAGATTACAAACAAATGGATGTATTACAATCCCTTAAAAACTTTAGCGGAA
GGTTTTATGGAGATATAGTAGAAGAAAAACAGAGTCATTCGGAGAATACTTTTCTCTCTC
CCTTTAATGTATACACTGCCCTGGGAATGATCCTTTCTGGCAGTGAAATGAATACAAAAG
CAGAGATAATGAAAGTGATGCACTTATCTAATTGTTTGGAACATCATGCAATTCACTATG
GAATCAGTGGACTTCTGTTTGACTGTTCAGAACGTGGTGAAGGTGTTGAGATAATGTTTG
GGAACGGATTGTTTACAGCAGAAGATGTGAATGTTAAAGAAGATTATCAAAATACTCTTA
AGAGTTATTACAACGCACAAACGGAATCTGTGGCGTTTCAGATGGATCCCGAAGATGCTG
GAAAACGAATAAACCAATGGGCTAGTTCACTGACCAAAGGAAAAATTCAAGAACTCTTTT
CGTCTCAATCACTATCAACCGACACATCAGTTTTGGTAATAACCACTACATATTTCGAAN
GTATGTGGGATCTACCTTTTCTTCAAGGAAGTTCACACGAAAGCGACTTCTTTAAGCTTG
ACGGGTCAACGATGAACGTGAAGTTAATGTATATGAATTCCTCATTTGACATGACCAGTT
TACCAGATTTGAAATCACGTGCTATTAAGATACCATTTAAAAATCCTAAATTCTCGTTAT
TGATCGTTCTTCCAACGCCAATGATGGATTACTTGAGTTACTAGATGCATTACATAGAGA
TGATGGNATTTCATCGATCCTTCCTCCTACTTTAAGGATACAGTTTGCATTGTNCTTACC
AAATTCA

consensusID : consensus_7439#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 207
fasta sequence

                              [CTCGACGCCAAAAATTCGGCACGAGGTGGTTTGGTGTTTACGCATATCGGGTGCTGGTTTTTTTTCTTGTCCTAGAGATTACAAACAAATGGATGTATTACAATCCCTTANAAACTTTAGCGGAAAGTTTTATGGAGATATAGTAGAAGAAAACAGAGTCATTCGGAGATACTTTTCTCTCTCCTTTAATGATACACTGCCCCTGGA]

[+] EMBL CD077575             [CTCGACGCCAAAAATTCGGCACGAGGTGGTTTGGTGTTTACGCATATCGGGTGCTGGTTTTTTTTCTTGTCCTAGAGATTACAAACAAATGGATGTATTACAATCCCTTANAAACTTTAGCGGAAAGTTTTATGGAGATATAGTAGAAGAAAACAGAGTCATTCGGAGATACTTTTCTCTCTCCTTTAATGATACACTGCCCCTGGA]




>consensus_7439#1
CTCGACGCCAAAAATTCGGCACGAGGTGGTTTGGTGTTTACGCATATCGGGTGCTGGTTT
TTTTTCTTGTCCTAGAGATTACAAACAAATGGATGTATTACAATCCCTTANAAACTTTAG
CGGAAAGTTTTATGGAGATATAGTAGAAGAAAACAGAGTCATTCGGAGATACTTTTCTCT
CTCCTTTAATGATACACTGCCCCTGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7439#0      ------------------------------------------------------------
consensus_7439#1      CTCGACGCCAAAAATTCGGCACGAGGTGGTTTGGTGTTTACGCATATCGGGTGCTGGTTT 60
                                                                                  

consensus_7439#0      ----GCAAGTTACC-AGATTACAAACAAATGGATGTATTACAATCCCTTAAAAACTTTAG 55
consensus_7439#1      TTTTTCTTGTCCTAGAGATTACAAACAAATGGATGTATTACAATCCCTTANAAACTTTAG 120
                           *  **     *********************************** *********

consensus_7439#0      CGGAAGGTTTTATGGAGATATAGTAGAAGAAAAACAGAGTCATTCGGAGAATACTTTTCT 115
consensus_7439#1      CGGAAAGTTTTATGGAGATATAGTAGAAGAAAA-CAGAGTCATTCGGAGA-TACTTTTCT 178
                      ***** *************************** **************** *********

consensus_7439#0      CTCTCCCTTTAATGTATACACTGCCCTGGGAATGATCCTTTCTGGCAGTGAAATGAATAC 175
consensus_7439#1      CTCTCC-TTTAATG-ATACACTGCCCCTGGA----------------------------- 207
                      ****** ******* ***********  ***                             

consensus_7439#0      AAAAGCAGAGATAATGAAAGTGATGCACTTATCTAATTGTTTGGAACATCATGCAATTCA 235
consensus_7439#1      ------------------------------------------------------------
                                                                                  

consensus_7439#0      CTATGGAATCAGTGGACTTCTGTTTGACTGTTCAGAACGTGGTGAAGGTGTTGAGATAAT 295
consensus_7439#1      ------------------------------------------------------------
                                                                                  

consensus_7439#0      GTTTGGGAACGGATTGTTTACAGCAGAAGATGTGAATGTTAAAGAAGATTATCAAAATAC 355
consensus_7439#1      ------------------------------------------------------------
                                                                                  

consensus_7439#0      TCTTAAGAGTTATTACAACGCACAAACGGAATCTGTGGCGTTTCAGATGGATCCCGAAGA 415
consensus_7439#1      ------------------------------------------------------------
                                                                                  

consensus_7439#0      TGCTGGAAAACGAATAAACCAATGGGCTAGTTCACTGACCAAAGGAAAAATTCAAGAACT 475
consensus_7439#1      ------------------------------------------------------------
                                                                                  

consensus_7439#0      CTTTTCGTCTCAATCACTATCAACCGACACATCAGTTTTGGTAATAACCACTACATATTT 535
consensus_7439#1      ------------------------------------------------------------
                                                                                  

consensus_7439#0      CGAANGTATGTGGGATCTACCTTTTCTTCAAGGAAGTTCACACGAAAGCGACTTCTTTAA 595
consensus_7439#1      ------------------------------------------------------------
                                                                                  

consensus_7439#0      GCTTGACGGGTCAACGATGAACGTGAAGTTAATGTATATGAATTCCTCATTTGACATGAC 655
consensus_7439#1      ------------------------------------------------------------
                                                                                  

consensus_7439#0      CAGTTTACCAGATTTGAAATCACGTGCTATTAAGATACCATTTAAAAATCCTAAATTCTC 715
consensus_7439#1      ------------------------------------------------------------
                                                                                  

consensus_7439#0      GTTATTGATCGTTCTTCCAACGCCAATGATGGATTACTTGAGTTACTAGATGCATTACAT 775
consensus_7439#1      ------------------------------------------------------------
                                                                                  

consensus_7439#0      AGAGATGATGGNATTTCATCGATCCTTCCTCCTACTTTAAGGATACAGTTTGCATTGTNC 835
consensus_7439#1      ------------------------------------------------------------
                                                                                  

consensus_7439#0      TTACCAAATTCA 847
consensus_7439#1      ------------