cluster # 7445

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Schistosoma mansoni
cluster # 7445 cluster # 7445 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7445#0 length = 796 sequences # 3

consensus_7445#1 length = 438 sequences # 1
consensus_7445#2 length = 397 sequences # 1

consensusID : consensus_7445#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 796
fasta sequence

                              [AGAAGTTGGTTTAGAAAATATAGAAAAGTTTCAAGGAGCTTATGTTCGTGGTCGTACAGTTGCTTGTTTGCAAAGATTTACTCAACATAGTACAGCTAGTGGTAAAGCATTACATAGAAGTACTTATGTACAACAAACAAGACTAGTTCGCCAGCCTAACCGAAGCGGTGAAAAGAAGAAGGGAGATACTCTAAGTGGACTAGATGAAAATTTCCAAGGTAAAGGTTTTGAACAAGATGAACATACCTTTATCTCGACCCCAATACATCTTACTGATCCATGTGTATTTAATAGTGAACAGTTAACCAAATATGAAATGAAACCAGACGATAATATTCAATCAACATCTGCAAAGTTTATTCAATGTTCAAATGATCGCCTACAACTATTACAATCCCTTTGTCCATCCGCGGCTGCTGCAACCATTCTGCTGGGTAAACCTGTACGTGATCCACACGATAATGATGATATTAAACAAAATATTTTGATTAAATCTAATGATCTCGATGAAACTCGTGTTCTGGTAACAGCGAACTCATGGTGTCCTATGTCATTAAGAACAAAAGATCCTGAATCACAGTTAATATTCAATTCCATTCATAAAGATAATAATAGCAATACTCCTACAAAAACAAATACACCAAAACATTCACCCCCGTCTGTGAGCGTGCCAGAACCTACAATACGCGGTGGAACACTTGATGGATTGCTTATATATGCACTGAACTTATTACAGATGCCTATACCAACTAGTCATCCAGATTATTTATTTCCTGATGTAATTCGTTTAATTTAT]

[-] EMBL CD124955             [AGAAGTTGGTTTAGAAAATATAGAAAAGTTTCAAGGAGCTTATGTTCGTGGTCGTACAGTTGCTTGTTTGCAAAGATTTACTCAACATAGTACAGCTAGTGGTAAAGCATTACATAGAAGTACTTATGTACAACAAACAAGACTAGTTCGCCAGCCTAACCGAAGCGGTGAAAAGAAGAAGGGAGATACTCTAAGTGGACTAGATGAAAATTTCCAAGGTAAAGGTTTTGAACAAGATGAACATACCTTTATCTCGACCCCAATACATCTTACTGATCCATGTGTATTTAATAGTGAACAGTTAACCAAATATGAAATGAAACCAGACGATAATATTCGATCAACATCTGCAAAGTTTATTCAATGTTCAAATGATCGCCTACAACTATTACAATCCCTTTGTCCATCCGCGGCTGCTGCAACCATTCTGCTGGGTAAAC                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD124870             [AGAAGTTGGTTTAGAAAATATAGAAAAGTTTCAAGGAGCTTATGTTCGTGGTCGTACAGTTGCTTGTTTGCAAAGATTTACTCAACATAGTTCAGCTAGTGGTAAAGCATTACATAGAAGTACTTATGTACAACAAACAAGACTAGTTCGCCAGCCTAACCGAAGCGGTGAAAAGAAGAGGGGAGATACTCTAAGTGGACTAGATGAAAATTTCCAAGGTAAAGGTTTTGAACAAGATGAACATACCTTTATCTCGACCCCAATACATCTTACTGATCCATGTGTATTTAATAGTGAACAGTTAACCAAATATGAAATGAAACCAGACGATAATATTCAATCAACATCTGCAAAGTTTATTCAATGTTCAAATGATCGCCTACAACTATTACAATCCCTTTGTCCATCCGCGGCTGCTGCAACCATTCTGCTGGGTAAAC                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD092178             [                                                                                                                                                                                                                                                                                                                                            ATATTCAATCAACATCTGCAAAGTTTATTCAATGTTCAAATGATCGCCTACAACTATTACAATCCCTTTGTCCATCCGCGGCTGCTGCAACCATTCTGCTGGGTAAACCTGTACGTGATCCACACGATAATGATGATATTAAACAAAATATTTTGATTAAATCTAATGATCTCGATGAAACTCGTGTTCTGGTAACAGCGAACTCATGGTGTCCTATGTCATTAAGAACAAAAGATCCTGAATCACAGTTAATATTCAATTCCATTCATAAAGATAATAATAGCAATACTCCTACAAAAACAAATACACCAAAACATTCACCCCCGTCTGTGAGCGTGCCAGAACCTACAATACGCGGTGGAACACTTGATGGATTGCTTATATATGCACTGAACTTATTACAGATGCCTATACCAACTAGTCATCCAGATTATTTATTTCCTGATGTAATTCGTTTAATTTAT]




>consensus_7445#0
AGAAGTTGGTTTAGAAAATATAGAAAAGTTTCAAGGAGCTTATGTTCGTGGTCGTACAGT
TGCTTGTTTGCAAAGATTTACTCAACATAGTACAGCTAGTGGTAAAGCATTACATAGAAG
TACTTATGTACAACAAACAAGACTAGTTCGCCAGCCTAACCGAAGCGGTGAAAAGAAGAA
GGGAGATACTCTAAGTGGACTAGATGAAAATTTCCAAGGTAAAGGTTTTGAACAAGATGA
ACATACCTTTATCTCGACCCCAATACATCTTACTGATCCATGTGTATTTAATAGTGAACA
GTTAACCAAATATGAAATGAAACCAGACGATAATATTCAATCAACATCTGCAAAGTTTAT
TCAATGTTCAAATGATCGCCTACAACTATTACAATCCCTTTGTCCATCCGCGGCTGCTGC
AACCATTCTGCTGGGTAAACCTGTACGTGATCCACACGATAATGATGATATTAAACAAAA
TATTTTGATTAAATCTAATGATCTCGATGAAACTCGTGTTCTGGTAACAGCGAACTCATG
GTGTCCTATGTCATTAAGAACAAAAGATCCTGAATCACAGTTAATATTCAATTCCATTCA
TAAAGATAATAATAGCAATACTCCTACAAAAACAAATACACCAAAACATTCACCCCCGTC
TGTGAGCGTGCCAGAACCTACAATACGCGGTGGAACACTTGATGGATTGCTTATATATGC
ACTGAACTTATTACAGATGCCTATACCAACTAGTCATCCAGATTATTTATTTCCTGATGT
AATTCGTTTAATTTAT

consensusID : consensus_7445#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence

                              [GAATAAACTTTGCAGATGTTGATTGAATATTATCGTCTGGTTTCATTTCATATCTAGTAATATTGAGTAGATATAATTTTTAATGATCATTAAAGAATGATAAAGTGAGCGAAGAATTGTTTTATTTCGGTCAATATTCCACCATGACAGTATAGTAACGTTTAAGATTATTACTAGGTAACGATCAAGTAATGATAATGAGGTAATGAATAATACGTAGATGGTATTATGATTGGTAAATTTATTTCAAAGTAGTAAATAGTCATGAATCCATTAGAATAATTTCAGCACAAAATTTGAAGTTTTACAACAGTGTTGTTTATCAATACACACCTTAATTGCAACGGTGATTATCTTTCACTAATCTGAATCAAGAATTTTTTCGATCCAGTGTATTATTACAGAGGTTTTAATCACGAAGTGATTTGGTTAACTGTT]

[+] EMBL CD197828             [GAATAAACTTTGCAGATGTTGATTGAATATTATCGTCTGGTTTCATTTCATATCTAGTAATATTGAGTAGATATAATTTTTAATGATCATTAAAGAATGATAAAGTGAGCGAAGAATTGTTTTATTTCGGTCAATATTCCACCATGACAGTATAGTAACGTTTAAGATTATTACTAGGTAACGATCAAGTAATGATAATGAGGTAATGAATAATACGTAGATGGTATTATGATTGGTAAATTTATTTCAAAGTAGTAAATAGTCATGAATCCATTAGAATAATTTCAGCACAAAATTTGAAGTTTTACAACAGTGTTGTTTATCAATACACACCTTAATTGCAACGGTGATTATCTTTCACTAATCTGAATCAAGAATTTTTTCGATCCAGTGTATTATTACAGAGGTTTTAATCACGAAGTGATTTGGTTAACTGTT]




>consensus_7445#1
GAATAAACTTTGCAGATGTTGATTGAATATTATCGTCTGGTTTCATTTCATATCTAGTAA
TATTGAGTAGATATAATTTTTAATGATCATTAAAGAATGATAAAGTGAGCGAAGAATTGT
TTTATTTCGGTCAATATTCCACCATGACAGTATAGTAACGTTTAAGATTATTACTAGGTA
ACGATCAAGTAATGATAATGAGGTAATGAATAATACGTAGATGGTATTATGATTGGTAAA
TTTATTTCAAAGTAGTAAATAGTCATGAATCCATTAGAATAATTTCAGCACAAAATTTGA
AGTTTTACAACAGTGTTGTTTATCAATACACACCTTAATTGCAACGGTGATTATCTTTCA
CTAATCTGAATCAAGAATTTTTTCGATCCAGTGTATTATTACAGAGGTTTTAATCACGAA
GTGATTTGGTTAACTGTT

consensusID : consensus_7445#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [GGAATTTATCTATCGAGAATAATTCAAATTTGAATGGTACTGTTATTCCTACTGCACCTGAATGGCATCATGCAGAAGTTGGTTTAGAAAATATAGAAAAGTTTCAAGGAGCTTATGTTCGTGGTCGTACACTTGCTTGTGTGCAAAGAGTTTACTTCAAATTGATTTAGGTTATTGTTAAACCGTAAAATAGAAGTACTTATGTACAACAAACAAGACTAGTTCGCCAGGTATGTATATTTTATGTAAGCTAAATATTATGTTTCTCTTTGTTAAATACTATTAGTTTTTCCAGTGTAAAATTTAACTTCGTTACAGGAATATTTAGTACTTTATTTATTTATTTCATGGACTCCATCTGGGGAATTGTTAAATTATGAAATTTTTGGTCAGCTCT]

[-] EMBL CD139242             [GGAATTTATCTATCGAGAATAATTCAAATTTGAATGGTACTGTTATTCCTACTGCACCTGAATGGCATCATGCAGAAGTTGGTTTAGAAAATATAGAAAAGTTTCAAGGAGCTTATGTTCGTGGTCGTACACTTGCTTGTGTGCAAAGAGTTTACTTCAAATTGATTTAGGTTATTGTTAAACCGTAAAATAGAAGTACTTATGTACAACAAACAAGACTAGTTCGCCAGGTATGTATATTTTATGTAAGCTAAATATTATGTTTCTCTTTGTTAAATACTATTAGTTTTTCCAGTGTAAAATTTAACTTCGTTACAGGAATATTTAGTACTTTATTTATTTATTTCATGGACTCCATCTGGGGAATTGTTAAATTATGAAATTTTTGGTCAGCTCT]




>consensus_7445#2
GGAATTTATCTATCGAGAATAATTCAAATTTGAATGGTACTGTTATTCCTACTGCACCTG
AATGGCATCATGCAGAAGTTGGTTTAGAAAATATAGAAAAGTTTCAAGGAGCTTATGTTC
GTGGTCGTACACTTGCTTGTGTGCAAAGAGTTTACTTCAAATTGATTTAGGTTATTGTTA
AACCGTAAAATAGAAGTACTTATGTACAACAAACAAGACTAGTTCGCCAGGTATGTATAT
TTTATGTAAGCTAAATATTATGTTTCTCTTTGTTAAATACTATTAGTTTTTCCAGTGTAA
AATTTAACTTCGTTACAGGAATATTTAGTACTTTATTTATTTATTTCATGGACTCCATCT
GGGGAATTGTTAAATTATGAAATTTTTGGTCAGCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7445#0      ------------------------------------------------------------
consensus_7445#2      GGAATTTATCTATCGAGAATAATTCAAATTTGAATGGTACTGTTATTCCTACTGCACCTG 60
consensus_7445#1      -----GAATAAACTTTGCAGATGTTGATTGAATATTATCGTCTGGTTTCATTTCATATCT 55
                                                                                  

consensus_7445#0      -------------AGAAGTTGGTTTAGAAAAT-ATAGAAAAGTTTCAAGG--AGCTTATG 44
consensus_7445#2      AATGGCATCATGCAGAAGTTGGTTTAGAAAAT-ATAGAAAAGTTTCAAGG--AGCTTATG 117
consensus_7445#1      AGTAATATTGAGTAGATATAATTTTTAATGATCATTAAAGAATGATAAAGTGAGCGAAGA 115
                                   ***  *   ***  *  ** **  ** * *   ** *  ***  *  

consensus_7445#0      TTCGTGGTCGTACAGTTGCTTGTTTGCAAAGA-TTTACTCAACATAG--TACAGCTAGTG 101
consensus_7445#2      TTCGTGGTCGTACACTTGCTTGTGTGCAAAGAGTTTACTTCAAATTGATTTAGGTTATTG 177
consensus_7445#1      ATTGTTTTATTTCGGTCAATATTCCACCATGA--CAGTATAGTAACGTTTAAGATTATTA 173
                       * **  *  * *  *   *  *   * * **           *  *  *     ** * 

consensus_7445#0      GTAAAGCATTACATAGAAGTACTTATGTA-CAACAAACAAGACTAGTTCGCCAGCCTAAC 160
consensus_7445#2      TTAAACCGTAAAATAGAAGTACTTATGTA-CAACAAACAAGACTAGTTCGCCAGGTATGT 236
consensus_7445#1      CTAGGTAACGATCAAGTAATGATAATGAGGTAATGAATAATACGTAGATGGTATTATGAT 233
                       **       *   ** * *  * ***    **  ** ** **      *  *       

consensus_7445#0      CGAAGCGGTGAAAAGAAGAAGGGA-GATACTCTAAGTGGACTAG-ATGAAAATTTCCAAG 218
consensus_7445#2      ATATTTTATGTAAGCTAAATATTATGTTTCTCTTTGTTAAATACTATTAGTTTTTCCAGT 296
consensus_7445#1      TGGTAAATTTATTTCAAAGTAGTAAATAGTCATGAATCCATTAG----AATAATTTCAGC 289
                              *       *      *        *   *  * **     *    ** **  

consensus_7445#0      GTAAAGGTTTTGAACAAGATGAACATACCTTTATCTCGACCCCAATACATCTTACTGATC 278
consensus_7445#2      GTAAAA--TTTAACTTCGTTACAGGAATATTTAGTACTTTATTTATTTATTTCATGGACT 354
consensus_7445#1      ACAAAATTTGAAGTTTTACAACAGTGTTGTTTATCAATACACACCTTAATTGCAACGGTG 349
                        ***   *             *      ****            *  **   *  *   

consensus_7445#0      CATGTGTATTTAATAGTGAACAGTTAACCAAATATGAAATGAAACCAGACGATAATATTC 338
consensus_7445#2      C-CATCTGGGGAATTGTTAA---ATTATGAAATTTTTGGTCAGCTCT------------- 397
consensus_7445#1      ATTATCT-TTCACTAATCTG-AATCAAGAATTTTTTCGATCCAGTGTATTATTACAGAGG 407
                          * *    * *  *         *  *  * *    *                    

consensus_7445#0      AATCAACATCTGCAAAGTTTATTCAATGTTCAAATGATCGCCTACAACTATTACAATCCC 398
consensus_7445#2      ------------------------------------------------------------
consensus_7445#1      TTTTAATCACGAAGTGATTTGGTTAACTGTT----------------------------- 438
                                                                                  

consensus_7445#0      TTTGTCCATCCGCGGCTGCTGCAACCATTCTGCTGGGTAAACCTGTACGTGATCCACACG 458
consensus_7445#2      ------------------------------------------------------------
consensus_7445#1      ------------------------------------------------------------
                                                                                  

consensus_7445#0      ATAATGATGATATTAAACAAAATATTTTGATTAAATCTAATGATCTCGATGAAACTCGTG 518
consensus_7445#2      ------------------------------------------------------------
consensus_7445#1      ------------------------------------------------------------
                                                                                  

consensus_7445#0      TTCTGGTAACAGCGAACTCATGGTGTCCTATGTCATTAAGAACAAAAGATCCTGAATCAC 578
consensus_7445#2      ------------------------------------------------------------
consensus_7445#1      ------------------------------------------------------------
                                                                                  

consensus_7445#0      AGTTAATATTCAATTCCATTCATAAAGATAATAATAGCAATACTCCTACAAAAACAAATA 638
consensus_7445#2      ------------------------------------------------------------
consensus_7445#1      ------------------------------------------------------------
                                                                                  

consensus_7445#0      CACCAAAACATTCACCCCCGTCTGTGAGCGTGCCAGAACCTACAATACGCGGTGGAACAC 698
consensus_7445#2      ------------------------------------------------------------
consensus_7445#1      ------------------------------------------------------------
                                                                                  

consensus_7445#0      TTGATGGATTGCTTATATATGCACTGAACTTATTACAGATGCCTATACCAACTAGTCATC 758
consensus_7445#2      ------------------------------------------------------------
consensus_7445#1      ------------------------------------------------------------
                                                                                  

consensus_7445#0      CAGATTATTTATTTCCTGATGTAATTCGTTTAATTTAT 796
consensus_7445#2      --------------------------------------
consensus_7445#1      --------------------------------------