These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 875 fasta sequence [CCGGAGGCCTGNAATTCGGCACGAGGCGGCACGAGGGGCTTGTTCGATAATTTGACAGAGTCAATGATATTGCAAGAGGTAAAAACCATTGAGTTACTTCCAAACTGTACAATTGATAGTTTAAAACAGTGTGCTACACGTCTTGTAGAGCAAGCTCGAAGTGCGGCGTTCGCTCCTGATTTCGTTTCTCCATTCGCTAGTGAAGCACGTCGTTACGGTATAAACATTGCAGGTGGAGTTCCTGGTGACATAACCGTCATTCTAGGTTTAGTTATTGAAGAGAAATCATCACCAACTAGTAATCACGTAAAAGAAACACGATCCTCATTAAATCATCATCATCATCGTCGTCATCATCATCATTTACTTTTTCAACGGAATCGGAGTTTATCATGTTCTGAATTAAACTATAATAAATTTCATTCATTCACTTCTTCCTCTTCAACATTACCAACTTCTTCAAATAATACTACTACTGCTACTTCTTTTTCTTCAAAATTATTTCGAACTTATTCATGTACTTAATACCATTTTCTAGTTATATTTGAAAACAAAATCGTAACTAGATTCATCTTGTCCTACTGTCTACTAAGATGGTCAGATGCCGTTTAAGAATACTCAACTAGTTGACTATTTAGCCATATCTTTTTTCTCTTTCACACACACACACACTGCACATATATACTGTAAATAATTTTAACCAATGAAGTTAGCCAAACACTTGTTATCGCATTGTTCTCTTTTTTACAAGTGTTTTATCTTTTCACAGTAACGCGAATAATCCATATGTTTATTATGAAGAGGGAGACTATCGA-TTATGCGTAGAGATGATCCTGTATAATCGTAGAAATAATATTTATCATGCCTGTTTTATG] [+] EMBL CD081556 [CCGGAGGCCTGNAATTCGGCACGAGGCGGCACGAGGGGCTTGTTCGATAATTTGACAGAGTCAATGATATTGCAAGAGGTAAAAACCATTGAGTTACTTCCAAACTGTACAATTGATAGTTTAAAACAGTGTGCTACACGTCTTGTAGAGCAAGCTCGAAGTGCGGCGTTCGCTCCTGATTTCGTTTCTCCATTCGCTAGTGAAGCACGTCGTTACGGTATAAACATTGCAGGTGGAGTTCCTGGTGACATAACCGTCATTCTAGGTTTAGTTATTGAAGAGAAATCATCACCAACTAGTAATCACGTAAAAGAAACACGATCCTCATTAAATCATCATCATCATCGTCGTCATCATCATCATTTACTTTTTCAACGGAATCGGAGTTTATCATGTTCTGAATTAAACTATAATAAATTTCATTCATTCACTTCTTCCTCTTCAACATTACCAACTTCTTCAAATAATACTACTACTGCTACTTCTTTTTCTTCAAAATTATTTCGAACTTATTCATGTACTTAATACCATTTTCTAGTTATATTTGAAAACAAAATCGTAACTAGATTCATCTTGTCCTACTGTCTACTAAGATGGTCAGATGCCGTTTAAGAATACTCAACTAGTTGACTATTTAGCCATATCTTTTTTCTCTTTCACACACACACACACTGCACATATATACTGTAAATAATTTTAACCAATGAAGTTAGCCAAACACTTGTTATCGCATTGTTCTCTTTTTTACAAGTGTTTTATCTTTTCACAGTAACGCGAATAATCCATATGTTTATTATGAAGAGGGAGACTATCGA TTATGCGTAGAGATGATCCTGTATAA ] [-] EMBL CD075382 [ ACTCAACTAGTTGACTATTTAGCCATATCTTTTTTCTCTTTCACACACACACACACTGCACATATATACTGTAAATAATTTTAACCAATGAAGTTAGCCAAACACTTGTTATCGCATTGTTCTCTTTTTTACAAGTGTTTTATCTTTTCACAGTAAGGCGAATAATCCATATGTTTATTATGAAGA GGAGACTATCGATTTATGCGTAGAGATGATCCTGTATAATCGTAGAAATAATATTTATCATGCCTGTTTTATG] consensusID : consensus_7446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 720 fasta sequence [TTTAATACACCATTCCAGTTGTCTTGTCCACCTACGCTTCACTCAAGACGTTTTCATTGTGATTTACCTAATCAAGCTGCCCAAACATCTGTAGAAGTCAAACCAGGTGACATAATTATCGTGGGCACAGATGGCTTGTTCGATAATTTGACAGAGTCAATGATATTGCAAGAGGTAAAAACCATTGAGTTACTTCCAAACTGTACAATTGATAGTTTAAAACAGTGTGCTACACGTCTTGTAGAGCAAGCTCGAAGTGCGGCGTTCGCTCCTGATTTCGTTTCTCCATTCGCTAGTGAAGCACGTCGTTACGGTATAAACATTGCAGGTGGAGTTCCTGGTGACATAACCGTCATTTTAGGTTTAGTTATTGAAGAGAAATCATCACCAACTAGTAGTCACGTAAAAGAAACACGATCCTCATTAAATCATCATCATCATCGTCGTCATCATCATCATCATCATTTACTTTTTCAACGGAATCGGAGTTTATCATGTTCTGAATTAAACTATAATAAATTTCATTCATTCACTTCTTCCTCTTCAACATTACCAACTTCTTCAAATAATACTACTACTGCTACTTCTTTTTCTTCAAAATTATTTCGAACTTATTCATGTACTTAATACCATTTTCTAGTTATATTTGAAAACAAAATCGTAACTAGATTCATCTTGTCCTACTGTCTACTAAGATGGTCAGATGCCGTTTAAGAATAC] [+] EMBL CD162763 [TTTAATACACCATTCCAGTTGTCTTGTCCACCTACGCTTCACTCAAGACGTTTTCATTGTGATTTACCTAATCAAGCTGCCCAAACATCTGTAGAAGTCAAACCAGGTGACATAATTATCGTGGGCACAGATGGCTTGTTCGATAATTTGACAGAGTCAATGATATTGCAAGAGGTAAAAACCATTGAGTTACTTCCAAACTGTACAATTGATAGTTTAAAACAGTGTGCTACACGTCTTGTAGAGCAAGCTCGAAGTGCGGCGTTCGCTCCTGATTTCGTTTCTCCATTCGCTAGTGAAGCACGTCGTTACGGTATAAACATTGCA ] [-] EMBL CD180784 [ TTAATACACCATTCCAGTTGTCTTGTCCACCTACGCTTCACTCAAGACGTTTTCATTGTGATTTACCTAATCAAGCTGCCCAAACATCTGTAGAAGTCAAACCAGGTGACATAATTATCGTGGGCACAGATGGCTTGTTCGATAATTTGACAGAGTCAATGATATTGCAAGAGGTAAAAACCATTGAGTTACTTCCAAACTGTACAATTGATAGTTTAAAACAGTGTGCTACACGTCTTGTAGAGCAAGCTCGAAGTGCGGCGTTCGCTCCTGATTTCGTTTCTCCATTCGCTAGTGAAGCACGTCGTTACGGTATAAACATTGCAG ] [-] EMBL CD179622 [ CATAATTATCGTGGGCACAGATGGCTTGTTCGATAATTTGACAGAGTCAATGATATTGCAAGAGGTAAAAACCATTGAGTTACTTCCAAACTGTACAATTGATAGTTTAAAGCAGTGTGCTACACGTCTTGTAGAGCAAGCTCGAAGTGCGGCGTTCGCTCCTGATTTCGTTTCTCCATTCGCTAGTGAAGCACGTCGTTACGGTATAAACATTGCAGGTGGAGTTCCTGGTGACATAACCGTCATTTTAGGTTTAGTTATTGAAGAGAAATCATCACCAACTAGTAGTCACGTAAAAGAAACACGATCCTCATTAAATCATCATCATCATCGTCGTCATCATCATCATCATCATTTACTTTTTCAACGGAATCGGAGTTTATCATGTTCTGAATTAAACTATAATAAATTTCATTCATTCACTTCTTCCTCTTCAACATTACCAACTTCTTCAAATAATACTACTACTGCTACTTCTTTTTCTTCAAAATTATTTCGAACTTATTCATGTACTTAATACCATTTTCTAGTTATATTTGAAAACAAAATCGTAACTAGATTCATCTTGTCCTACTGTCTACTAAGATGGTCAGATGCCGTTTAAGAATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7446#0 ------------------------------------------------------------ consensus_7446#1 TTTAATACACCATTCCAGTTGTCTTGTCCACCTACGCTTCACTCAAGACGTTTTCATTGT 60 consensus_7446#0 -------------------------------CCGGAGGCCTGNAATTCGGCACGA----- 24 consensus_7446#1 GATTTACCTAATCAAGCTGCCCAAACATCTGTAGAAGTCAAACCAGGTGACATAATTATC 120 * ** * * * ** * consensus_7446#0 GGCGGCACGAGGGGCTTGTTCGATAATTTGACAGAGTCAATGATATTGCAAGAGGTAAAA 84 consensus_7446#1 GTGGGCACAGATGGCTTGTTCGATAATTTGACAGAGTCAATGATATTGCAAGAGGTAAAA 180 * ***** ************************************************ consensus_7446#0 ACCATTGAGTTACTTCCAAACTGTACAATTGATAGTTTAAAACAGTGTGCTACACGTCTT 144 consensus_7446#1 ACCATTGAGTTACTTCCAAACTGTACAATTGATAGTTTAAAACAGTGTGCTACACGTCTT 240 ************************************************************ consensus_7446#0 GTAGAGCAAGCTCGAAGTGCGGCGTTCGCTCCTGATTTCGTTTCTCCATTCGCTAGTGAA 204 consensus_7446#1 GTAGAGCAAGCTCGAAGTGCGGCGTTCGCTCCTGATTTCGTTTCTCCATTCGCTAGTGAA 300 ************************************************************ consensus_7446#0 GCACGTCGTTACGGTATAAACATTGCAGGTGGAGTTCCTGGTGACATAACCGTCATTCTA 264 consensus_7446#1 GCACGTCGTTACGGTATAAACATTGCAGGTGGAGTTCCTGGTGACATAACCGTCATTTTA 360 ********************************************************* ** consensus_7446#0 GGTTTAGTTATTGAAGAGAAATCATCACCAACTAGTAATCACGTAAAAGAAACACGATCC 324 consensus_7446#1 GGTTTAGTTATTGAAGAGAAATCATCACCAACTAGTAGTCACGTAAAAGAAACACGATCC 420 ************************************* ********************** consensus_7446#0 TCATTAAATCATCATCATCATCGTCGTCATCATCATCAT------TTACTTTTTCAACGG 378 consensus_7446#1 TCATTAAATCATCATCATCATCGTCGTCATCATCATCATCATCATTTACTTTTTCAACGG 480 *************************************** *************** consensus_7446#0 AATCGGAGTTTATCATGTTCTGAATTAAACTATAATAAATTTCATTCATTCACTTCTTCC 438 consensus_7446#1 AATCGGAGTTTATCATGTTCTGAATTAAACTATAATAAATTTCATTCATTCACTTCTTCC 540 ************************************************************ consensus_7446#0 TCTTCAACATTACCAACTTCTTCAAATAATACTACTACTGCTACTTCTTTTTCTTCAAAA 498 consensus_7446#1 TCTTCAACATTACCAACTTCTTCAAATAATACTACTACTGCTACTTCTTTTTCTTCAAAA 600 ************************************************************ consensus_7446#0 TTATTTCGAACTTATTCATGTACTTAATACCATTTTCTAGTTATATTTGAAAACAAAATC 558 consensus_7446#1 TTATTTCGAACTTATTCATGTACTTAATACCATTTTCTAGTTATATTTGAAAACAAAATC 660 ************************************************************ consensus_7446#0 GTAACTAGATTCATCTTGTCCTACTGTCTACTAAGATGGTCAGATGCCGTTTAAGAATAC 618 consensus_7446#1 GTAACTAGATTCATCTTGTCCTACTGTCTACTAAGATGGTCAGATGCCGTTTAAGAATAC 720 ************************************************************ consensus_7446#0 TCAACTAGTTGACTATTTAGCCATATCTTTTTTCTCTTTCACACACACACACACTGCACA 678 consensus_7446#1 ------------------------------------------------------------ consensus_7446#0 TATATACTGTAAATAATTTTAACCAATGAAGTTAGCCAAACACTTGTTATCGCATTGTTC 738 consensus_7446#1 ------------------------------------------------------------ consensus_7446#0 TCTTTTTTACAAGTGTTTTATCTTTTCACAGTAACGCGAATAATCCATATGTTTATTATG 798 consensus_7446#1 ------------------------------------------------------------ consensus_7446#0 AAGAGGGAGACTATCGATTATGCGTAGAGATGATCCTGTATAATCGTAGAAATAATATTT 858 consensus_7446#1 ------------------------------------------------------------ consensus_7446#0 ATCATGCCTGTTTTATG 875 consensus_7446#1 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||