cluster # 7449

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Schistosoma mansoni
cluster # 7449 cluster # 7449 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7449#0 length = 536 sequences # 3

consensus_7449#1 length = 451 sequences # 1
consensus_7449#2 length = 411 sequences # 1

consensusID : consensus_7449#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 536
fasta sequence

                              [GCCTAAGGCGACACGTAATAGTTCAGTTAGTTCAGACTGACGAATTGACTTGACTTGAGATTGAAACGCCTTTTCCCATGCATACAGTTTAACCACACGTATAACAGCAAGCACTTCGCCTAAGCATTTCATACGCTTGTCTTTATATTTCATTTCACGAATCTCAAATTTTTGAGTAGCCCATATCAGTAAACAATTAAGTGGCAATACTAGTAACAAAAATCCAACACCAGCTATCGCAGCTGAACCAAGTTGACGCCATAACAAAATAAACGACAAACCAAATTCAATGAATGCATCCCAAACAAGGAACGAGAACATAAAAAGTTCTTTTATACGATTCACATCAACACTGAGCAAATTTATCAATTCCCCCGTTGTATACTGGCTTCGAGTTTACGATAAATTGCGGACGTAAGGGCTGATCGGACAGATATTCCCAAAGACAAACAAGAGTAGAAACCCTTTTGATCCACTAAAACAGATATTGACTGAAGAAATAACATTGAAAATGCAATAAAATATCCTTGCCATTG]

[+] EMBL CD113043             [GCCTAAGGCGACACGTAATAGTTCAGTTAGTTCAGACTGACGAATTGACTTGACTTGAGATTGAAACGCCTTTTCCCATGCATACAGTTTAACCACACGTATAACAGCAAGCACTTCGCCTAAGCATTTCATACGCTTGTCTTTATATTTCATTTCACGAATCTCAAATTTTTGGGTAGCCCATATCAGTAAACAATTAAGTGGCAATACTAGTAACAAAAATCCAACACCAGCTATCGCAACTGAACCAAGTTGACGCCATAACAAAATAAACGACAAACCAAATTCAATGAATGCATCCCAAACAAGGAACGAGAACATAAAAAGTTCTTTTATACGATTCACATCAACACTGAGCAAATTTATCAATTCCCCCGTTGTATACTGGCTTCGAGTTTACGATAAATTGCGGACGTAAGGGCTGATCGGACAGATATTCCCAAAGACAAACAAGAGTAGAAACCCTTTTGATCCACTAAAACAGATATTGACTGAAGAAATAACATTGAAAATGCAATAAAATATCCTTGCCATTG]
[+] EMBL CD113066             [GCCTAAGGCGACACGTAATAGTTCAGTTAGTTCAGACTGACGAATTGACTTGACTTGAGATTGAAACGCCTTTTCCCATGCATACAGTTTAACCACACGTATAACAGCAAGCACTTCGCCTAAGCATTTCATACGCTTGTCTTTATATTTCATTTCACGAATCTCAAATTTTTGAGTAGCCCATATCAGTAAACAATTAAGTGGCAATACTAGTAACAAAAATCCAACACCAGCTATCGCAGCTGAACCAAGTTGACGCCATAACAAAATAAACGACAAACCAAATTCAATGAATGCATCCCAAACAAGGAACGAGAACATAAAAAGTTCTTTTATACGATTCACATCAACACTGAGCAAATTTATCAATTCCCCCGTTGTATACTGGCTTCGAGTTTACGATAAATTGCGGACGTAAAGGCTGATCGGACAGATATTCCCAAAGACAAACAAGAGTAGAAACCCTTTTGAT CACTAAAACAGATATTGACTGAAGAAATAACATTGAAAATGCAAT                  ]
[-] EMBL CD113097             [ ctTAAGGCGACACGTAATAGTTCAGTTAGTTCAGACTGACGAATTGACTTGACTTGAGATTGAAACGCCTTTTCCCATGCATACAGTTTATCCACACGTATAACAGCAAGCACTTCGCCTAAGCATTTCATACGCTTGTCTTTATATTTCATTTCACGAATCTCAAATTTTTGAGTAGCCCATATCAGTAAACAATTAAGTGGCAATACTAGTAACAAAAATCCAACACCAGCTATCGCAGCTGAACCAAGTTGACGCCATAACAAAATAAACGACAAACCAAATTCTATGAATGCATCCCAAACAAGGAACGAGAACATAAAAAGTTCTTTTATACGATTCACATCAACACTGAGCAAATTTATCAATTCCCCCGTTGTATACTGGCTTCGAGTTTACGATAAATTGCGGACGTAAGGGCTGATCGGACAGATATTCCCAAAGACAAACAAGAGTAGAAACCCTTTTGACCCACTAAAACAGATATTGACTGAAGAAATAACATTGAAAATGCAATA                 ]




>consensus_7449#0
GCCTAAGGCGACACGTAATAGTTCAGTTAGTTCAGACTGACGAATTGACTTGACTTGAGA
TTGAAACGCCTTTTCCCATGCATACAGTTTAACCACACGTATAACAGCAAGCACTTCGCC
TAAGCATTTCATACGCTTGTCTTTATATTTCATTTCACGAATCTCAAATTTTTGAGTAGC
CCATATCAGTAAACAATTAAGTGGCAATACTAGTAACAAAAATCCAACACCAGCTATCGC
AGCTGAACCAAGTTGACGCCATAACAAAATAAACGACAAACCAAATTCAATGAATGCATC
CCAAACAAGGAACGAGAACATAAAAAGTTCTTTTATACGATTCACATCAACACTGAGCAA
ATTTATCAATTCCCCCGTTGTATACTGGCTTCGAGTTTACGATAAATTGCGGACGTAAGG
GCTGATCGGACAGATATTCCCAAAGACAAACAAGAGTAGAAACCCTTTTGATCCACTAAA
ACAGATATTGACTGAAGAAATAACATTGAAAATGCAATAAAATATCCTTGCCATTG

consensusID : consensus_7449#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence

                              [CCACACGTATAGCAGCAAGCACTTCGCCTAAGCATTTCATACGCTTGTCTTTATATTTCATTTCACGAATCTCAAATTTTTGAGTAGCCCATATCAGTAAACAATTAAGTGGCAATACTAGTAACAAAAATCCAACACCAGCTATCGCAGCTGAACCAAGTTGACGCCATAACAAAATAAACGACAAACCAAATTCAATGAATGCATCCCAAACAAGGAACGAGAACATAAAAAGTTCTTTTATACGATTCACATCAACACTGAGCAAATTTATCAATTATCTAACAATACATTATGGTTGGCGAATAAGAACTCTCTTAAATAAGTAACAAACGTTATCAATAAAATAATATATGGCGCCAAATTCCAAACAACATGGCATAGACCCCAGCCTAAGGCGACACGTAATAGTTCAGTTAATTCAGACTGACGAATTGACTTGACTTGAGAT]

[+] EMBL CD114671             [CCACACGTATAGCAGCAAGCACTTCGCCTAAGCATTTCATACGCTTGTCTTTATATTTCATTTCACGAATCTCAAATTTTTGAGTAGCCCATATCAGTAAACAATTAAGTGGCAATACTAGTAACAAAAATCCAACACCAGCTATCGCAGCTGAACCAAGTTGACGCCATAACAAAATAAACGACAAACCAAATTCAATGAATGCATCCCAAACAAGGAACGAGAACATAAAAAGTTCTTTTATACGATTCACATCAACACTGAGCAAATTTATCAATTATCTAACAATACATTATGGTTGGCGAATAAGAACTCTCTTAAATAAGTAACAAACGTTATCAATAAAATAATATATGGCGCCAAATTCCAAACAACATGGCATAGACCCCAGCCTAAGGCGACACGTAATAGTTCAGTTAATTCAGACTGACGAATTGACTTGACTTGAGAT]




>consensus_7449#1
CCACACGTATAGCAGCAAGCACTTCGCCTAAGCATTTCATACGCTTGTCTTTATATTTCA
TTTCACGAATCTCAAATTTTTGAGTAGCCCATATCAGTAAACAATTAAGTGGCAATACTA
GTAACAAAAATCCAACACCAGCTATCGCAGCTGAACCAAGTTGACGCCATAACAAAATAA
ACGACAAACCAAATTCAATGAATGCATCCCAAACAAGGAACGAGAACATAAAAAGTTCTT
TTATACGATTCACATCAACACTGAGCAAATTTATCAATTATCTAACAATACATTATGGTT
GGCGAATAAGAACTCTCTTAAATAAGTAACAAACGTTATCAATAAAATAATATATGGCGC
CAAATTCCAAACAACATGGCATAGACCCCAGCCTAAGGCGACACGTAATAGTTCAGTTAA
TTCAGACTGACGAATTGACTTGACTTGAGAT

consensusID : consensus_7449#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence

                              [ACACGTATAGCAGCAAGCACTTCGCCTAAGCATTTCATACGCTTGTCTTTATATTTCATTTCACGAATCTCAAATTTTTGAGTAGCCCATATCAGTAAACAATTAAGTGGCAATACTAGTAACAAAAATCCAACACCAGCTATCACAGCTGAACCAAGTTGACGCCATAACAAAATAAACGACTAACCAAATTCAATGAATGCATCCCAAACAAGGAACGAGAACATAAAAAGTTCTTTTATACGATTCACATCAACACTGAGCAAATTTATCAATTCCCCCGTTGTATACTGGCTTCGAGCTTCAGAAGATAATCGAAGAGATTTACGATAAATTGCGGACGTAAGGGCTGATCGGACAGATATTCCCAAAGACAAACAAGAGTAGAAACCCTTTTGATCCACTAAAACA]

[-] EMBL CD062027             [ACACGTATAGCAGCAAGCACTTCGCCTAAGCATTTCATACGCTTGTCTTTATATTTCATTTCACGAATCTCAAATTTTTGAGTAGCCCATATCAGTAAACAATTAAGTGGCAATACTAGTAACAAAAATCCAACACCAGCTATCACAGCTGAACCAAGTTGACGCCATAACAAAATAAACGACTAACCAAATTCAATGAATGCATCCCAAACAAGGAACGAGAACATAAAAAGTTCTTTTATACGATTCACATCAACACTGAGCAAATTTATCAATTCCCCCGTTGTATACTGGCTTCGAGCTTCAGAAGATAATCGAAGAGATTTACGATAAATTGCGGACGTAAGGGCTGATCGGACAGATATTCCCAAAGACAAACAAGAGTAGAAACCCTTTTGATCCACTAAAACA]




>consensus_7449#2
ACACGTATAGCAGCAAGCACTTCGCCTAAGCATTTCATACGCTTGTCTTTATATTTCATT
TCACGAATCTCAAATTTTTGAGTAGCCCATATCAGTAAACAATTAAGTGGCAATACTAGT
AACAAAAATCCAACACCAGCTATCACAGCTGAACCAAGTTGACGCCATAACAAAATAAAC
GACTAACCAAATTCAATGAATGCATCCCAAACAAGGAACGAGAACATAAAAAGTTCTTTT
ATACGATTCACATCAACACTGAGCAAATTTATCAATTCCCCCGTTGTATACTGGCTTCGA
GCTTCAGAAGATAATCGAAGAGATTTACGATAAATTGCGGACGTAAGGGCTGATCGGACA
GATATTCCCAAAGACAAACAAGAGTAGAAACCCTTTTGATCCACTAAAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7449#0      GCCTAAGGCGACACGTAATAGTTCAGTTAGTTCAGACTGACGAATTGACTTGACTTGAGA 60
consensus_7449#2      ------------------------------------------------------------
consensus_7449#1      ------------------------------------------------------------
                                                                                  

consensus_7449#0      TTGAAACGCCTTTTCCCATGCATACAGTTTAACCACACGTATAACAGCAAGCACTTCGCC 120
consensus_7449#2      ----------------------------------ACACGTATAGCAGCAAGCACTTCGCC 26
consensus_7449#1      --------------------------------CCACACGTATAGCAGCAAGCACTTCGCC 28
                                                        ********* ****************

consensus_7449#0      TAAGCATTTCATACGCTTGTCTTTATATTTCATTTCACGAATCTCAAATTTTTGAGTAGC 180
consensus_7449#2      TAAGCATTTCATACGCTTGTCTTTATATTTCATTTCACGAATCTCAAATTTTTGAGTAGC 86
consensus_7449#1      TAAGCATTTCATACGCTTGTCTTTATATTTCATTTCACGAATCTCAAATTTTTGAGTAGC 88
                      ************************************************************

consensus_7449#0      CCATATCAGTAAACAATTAAGTGGCAATACTAGTAACAAAAATCCAACACCAGCTATCGC 240
consensus_7449#2      CCATATCAGTAAACAATTAAGTGGCAATACTAGTAACAAAAATCCAACACCAGCTATCAC 146
consensus_7449#1      CCATATCAGTAAACAATTAAGTGGCAATACTAGTAACAAAAATCCAACACCAGCTATCGC 148
                      ********************************************************** *

consensus_7449#0      AGCTGAACCAAGTTGACGCCATAACAAAATAAACGACAAACCAAATTCAATGAATGCATC 300
consensus_7449#2      AGCTGAACCAAGTTGACGCCATAACAAAATAAACGACTAACCAAATTCAATGAATGCATC 206
consensus_7449#1      AGCTGAACCAAGTTGACGCCATAACAAAATAAACGACAAACCAAATTCAATGAATGCATC 208
                      ************************************* **********************

consensus_7449#0      CCAAACAAGGAACGAGAACATAAAAAGTTCTTTTATACGATTCACATCAACACTGAGCAA 360
consensus_7449#2      CCAAACAAGGAACGAGAACATAAAAAGTTCTTTTATACGATTCACATCAACACTGAGCAA 266
consensus_7449#1      CCAAACAAGGAACGAGAACATAAAAAGTTCTTTTATACGATTCACATCAACACTGAGCAA 268
                      ************************************************************

consensus_7449#0      ATTTATCAATTCCCCCGTTGTATACTGGCTTCGAG----------------------TTT 398
consensus_7449#2      ATTTATCAATTCCCCCGTTGTATACTGGCTTCGAGCTTCAGAAGATAATCGAAGAGATTT 326
consensus_7449#1      ATTTATCAATTATCTAACAATACATTATGGTTGGCG----------AATAAGAACTCTCT 318
                      ***********  *      ** * *    * *                        * *

consensus_7449#0      ACGATAAATTGCGGACGTAAGGGCTGATCGGACAGATATTCCCAAAGACAAACAAGAGTA 458
consensus_7449#2      ACGATAAATTGCGGACGTAAGGGCTGATCGGACAGATATTCCCAAAGACAAACAAGAGTA 386
consensus_7449#1      TAAATAAGTAACAAACGTTATCAATAAAATAATATATGGCGCCAAATTCCAAACAACATG 378
                         **** *  *  **** *    * *    * * **    *****  * **  *   * 

consensus_7449#0      GAAACCCTTTTGATCCACTAAAACAGATATTGACTGAAGAAATAACATTGAAAATGCAAT 518
consensus_7449#2      GAAACCCTTTTGATCCACTAAAACA----------------------------------- 411
consensus_7449#1      GCATAGACCCCAGCCTAAGGCGACACGTAATAGTTCAGT---TAATTCAGACTGACGAAT 435
                      * *           * *     ***                                   

consensus_7449#0      AAAATATCCTTGCCATTG 536
consensus_7449#2      ------------------
consensus_7449#1      TGACTTGACTTGAGAT-- 451