cluster # 745

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Schistosoma mansoni
cluster # 745 cluster # 745 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_745#0 length = 406 sequences # 1

consensus_745#1 length = 398 sequences # 1

consensusID : consensus_745#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence

                              [TTTTTTTTTTTTATTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATACATCTACACGTACAGAAATTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAGTAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAATTATAATTAATTATGAAGTTAAGGGATATTATAACCGAACGTATTAATGAGCATCCGTAAGTGCAACAACTCCGGGTAATTGTTTACCTTCGAGAAGTTCAAGACTAGCACCACCACCAGTACTGACATGACTAACTTTGTCTTCTGTGTCCCATTTGGCGCACATGTTGCGGTGTCACCACCAACAATATAGTTGTAGCACATTTTTAGTACTTGGACTACTCAT]

[+] EMBL AI395264             [TTTTTTTTTTTTATTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATACATCTACACGTACAGAAATTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAGTAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAATTATAATTAATTATGAAGTTAAGGGATATTATAACCGAACGTATTAATGAGCATCCGTAAGTGCAACAACTCCGGGTAATTGTTTACCTTCGAGAAGTTCAAGACTAGCACCACCACCAGTACTGACATGACTAACTTTGTCTTCTGTGTCCCATTTGGCGCACATGTTGCGGTGTCACCACCAACAATATAGTTGTAGCACATTTTTAGTACTTGGACTACTCAT]




>consensus_745#0
TTTTTTTTTTTTATTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATAC
ATCTACACGTACAGAAATTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAA
CAGTAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAA
TTATAATTAATTATGAAGTTAAGGGATATTATAACCGAACGTATTAATGAGCATCCGTAA
GTGCAACAACTCCGGGTAATTGTTTACCTTCGAGAAGTTCAAGACTAGCACCACCACCAG
TACTGACATGACTAACTTTGTCTTCTGTGTCCCATTTGGCGCACATGTTGCGGTGTCACC
ACCAACAATATAGTTGTAGCACATTTTTAGTACTTGGACTACTCAT

consensusID : consensus_745#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 398
fasta sequence

                              [TTTTTTTTTTTTTTTTTATATGACAAAAGTTTTATTCTTGGATGATGTTACAATGAAATACCAACAGCACCTTTTCAATATACCACTTGAAGATGGGCAAAAGCTACGCACATATATGGAAAAAAAACTATTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATACATCTACACGTACAGAAATTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAGTAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAATTATAATTAATTATGAAGTTAAGGGATATTTAAACCGAACGTATTAATGAGCATCCGTAAGTGCAACAACTCCCGGGAAATGTTAACCTTCGAGAAATTCA]

[+] EMBL AI394924             [TTTTTTTTTTTTTTTTTATATGACAAAAGTTTTATTCTTGGATGATGTTACAATGAAATACCAACAGCACCTTTTCAATATACCACTTGAAGATGGGCAAAAGCTACGCACATATATGGAAAAAAAACTATTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATACATCTACACGTACAGAAATTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAGTAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAATTATAATTAATTATGAAGTTAAGGGATATTTAAACCGAACGTATTAATGAGCATCCGTAAGTGCAACAACTCCCGGGAAATGTTAACCTTCGAGAAATTCA]




>consensus_745#1
TTTTTTTTTTTTTTTTTATATGACAAAAGTTTTATTCTTGGATGATGTTACAATGAAATA
CCAACAGCACCTTTTCAATATACCACTTGAAGATGGGCAAAAGCTACGCACATATATGGA
AAAAAAACTATTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATACATC
TACACGTACAGAAATTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAG
TAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAATTA
TAATTAATTATGAAGTTAAGGGATATTTAAACCGAACGTATTAATGAGCATCCGTAAGTG
CAACAACTCCCGGGAAATGTTAACCTTCGAGAAATTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_745#0      ------------------------------------------------------------
consensus_745#1      TTTTTTTTTTTTTTTTTATATGACAAAAGTTTTATTCTTGGATGATGTTACAATGAAATA 60
                                                                                 

consensus_745#0      ---------------------------------------------------------TTT 3
consensus_745#1      CCAACAGCACCTTTTCAATATACCACTTGAAGATGGGCAAAAGCTACGCACATATATGGA 120
                                                                                 

consensus_745#0      TTTTTTTTTATTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATACATC 63
consensus_745#1      AAAAAAACTATTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATACATC 180
                             ****************************************************

consensus_745#0      TACACGTACAGAAATTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAG 123
consensus_745#1      TACACGTACAGAAATTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAG 240
                     ************************************************************

consensus_745#0      TAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAATTA 183
consensus_745#1      TAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAATTA 300
                     ************************************************************

consensus_745#0      TAATTAATTATGAAGTTAAGGGATATTATAACCGAACGTATTAATGAGCATCCGTAAGTG 243
consensus_745#1      TAATTAATTATGAAGTTAAGGGATATTTAAACCGAACGTATTAATGAGCATCCGTAAGTG 360
                     ***************************  *******************************

consensus_745#0      CAACAACTCCGGGTAATTGTTTACCTTCGAGAAGTTCAAGACTAGCACCACCACCAGTAC 303
consensus_745#1      CAACAACTCCCGGGAAATGTTAACCTTCGAGAAATTCA---------------------- 398
                     ********** ** ** **** *********** ****                      

consensus_745#0      TGACATGACTAACTTTGTCTTCTGTGTCCCATTTGGCGCACATGTTGCGGTGTCACCACC 363
consensus_745#1      ------------------------------------------------------------
                                                                                 

consensus_745#0      AACAATATAGTTGTAGCACATTTTTAGTACTTGGACTACTCAT 406
consensus_745#1      -------------------------------------------