These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7462#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 914 fasta sequence [CTTCCTGAACACTGGGGTGTTTGTTGTTTGTGTGCTAAAGAACTGCGTTCACCAAACGGTTTGTTGGATCATGAAATGAGACATTTAGGTCTCTCTAGGTTCCGATGTGGAGTTCATAATGTTTCGTTCCTTGATCGGCGATCATGGCAAGTTCATATGAATGAACATCATGCATGCCCACGTTCAGGTCCTTTATCTGTTCTTTTACGTCCGAATCCAGTTAATCAAAATGATTCTGGAAGTGACCAGGATGAAGAAGATGATGAACTAGTTGAACAAGACACTGTCCCAGGTAGTGGTTTGCTCGCTGGACTTGCGAACGTATTCAACACAAATCTTTTAGTTGGTCGAATGGAAGCTCCACAATGCGAAAAATGCAGTGATTATTTCCCATCAGCAGAAGTGCTTGCACAACATCTAGACTTTTGTGATGGTGTTAGTTTCTCTCTTCGTACCCCTTTATCTCGAATCGGCGGTGGTGTTTCGAAGACCATCTTAGCAGATGATTCATACACTAGGTCTGGAGATGATACAACTGTGGAAGGTTCTGTTCCAAATGCTGATGAAGTGACATCAGACGCCAAAGATGATGCATGTGTTTGCGGTATCTGTGGAACTCAAGTCAATTCACGTGATAAAATACTTCGACACTTCACTGTTTATCACCTTCAATGCATTTTGTGTAATAACATCCTTCGGTCAATGGAAGAATTGTCTGATCATTATCATACACACATAAAAACTGATGCACCAAATGCCTTGGAAGAATTTGAGAATGAGGAAGCTGAAATAGTGAAAAGTGATCCAGATAAAGAAGTAAACCTCAAGGATGGTACTAATAAAAAATCGGCAAATAAACTAATGACATGTGACATTTGTACAGAGTTTTATGGAACGAAATTAACTATTATTTT] [-] EMBL CD098370 [CTTCCTGAACACTGGGGTGTTTGTTGTTTGTGTGCTAAAGAACTGCGTTCACCAAACGGTTTGTTGGATCATGAAATGAGACATTTAGGTCTCTCTAGGTTCCGATGTGGAGTTCATAATGTTTCGTTCCTTGATCGGCGATCATGGCAAGTTCATATGAATGAACATCATGCATGCCCACGTTCAGGTCCTTTATCTGTTCTTTTACGTCCGAATCCAGTTAATCAAAATGATTCTGGAAGTGACCAGGATGAAGAAGATGATGAACTAGTTGAACAAGACACTGTCCCAGGTAGTGGTTTGCTCGCTGGACTTGCGAACGTATTCAACACAAATCTTTTAGTTGGTCGAATGGAAGCTCCACAATGCGAAAAATGCAGTGATTATTTCCCATCAGCAGAAGTGCTTGCACAACATCTAGACTTTTGTGATGGTGTTAGTTTCTCCCTTCGTACCCCTTTA ] [-] EMBL CD098321 [CTTCCTGAACACTGGGGTGTTTGTTGTTTGTGTGCTAAAGAACTGCGTTCACCAAACGGTTTGTTGGATCATGAAATGAGACATTTAGGTCTCTCTAGGTTCCGATGTGGAGTTCATAATGTTTCGTTCCTTGATCGGCGATCATGGCAAGTTCATATGAATGAACATCATGCATGCCCACGTTCAGGTCCTTTATCTGTTCTTTTACGTCCGAATCCAGTTAATCAAAATGATTCTGGAAGTGACCAAGATGAAGAAGATGATGAACTAGTTGAACAAGACACTGTCCCAGGTAGTGGTTTGCTCGCTGGACTTGCGAACGTATTCAACACAAATCTTTTAGTTGGTCGAATGGAAGCTCCACAATGCGAAAAATGCAGTGATTATTTCCCATCAGCAGAAGTGCTTGCACAACATCTAGACTTTTGTGATGGTGTTAGTTTCTCTCTTCGTACCCCTTTA ] [+] EMBL CD189761 [ TGCTCGCTGGACTTGCGAACGTATTCAACACAAATCTTTTAGTTGGTCGAATGGAAGCTCCACAATGCGAAAAATGCAGTGATTATTTCCCATCAGCAGAGGTACTTGCACAACATCTAGACTTTTGTGATGGTGTTAGTTTCTCTCTTCGTACCCCTTTATCTCGAATCGGCGGTGGTGTTTCGAAGACCATCTTAGCAGATGATTCATACACTAGGTCTGGAGATGATACAACTGTGGAAGGTTCTGTTCCAAATGCTGATGAAGTGACATCAGACGCCAAAGATGATGCATGTGTTTGCGGTATCTGTGGAACTCAAGTCAATTCACGTGATAAAATACTTCGACACTTCACTGTTTATCACCTTCAATGCATTTTGTGTAATAACATCCTTCGGTCAATGGAAGAATTGTCTGATCATTATCATACACACATAAAAACTGATGCACCAAATGCCTTGGAAGAATTTGAGAATGAGGAAGCTGAAATAGTGAAAAGTGATCCAGATAAAGAAGTAAACCTCAAGGATGGTACTAATAAAAAATCGGCAAATAAACTAATGACATGTGACATTTGTACAGAGTTTTATGGAACGAAATTAACTATTATTTT] [+] EMBL CD145600 [ nnGCGAAAAATGCAGTGATTATTTCCCATCAGCAGAGGTACTTGCACAACATCTAGACTTTTGTGATGGTGTGAGTTTCTCTCTTCGTACCCCTTTATCTCGAATCGGCGGTGGTGTTTCGAAGACCATCTTAGCAGATGATTCATACACTAGGTCTGGAGATGATACAACTGTGGAAGGTTCTGTTCCAAATGCTGATGAAGTGACATCAGACGCCAAAGATGATGCATGTGTTTGCGGTATCTGTGGAACTCAAGTCAATTCACGTGATAAAATACTTCGACACTTCACTGTTTATCACCTTCAATGCATTTTGTGTAATAACATCCTTCGGTCAATGGAAGAATTGTCTGATCATTATCATACACACATAAAAACTGATGCACCAA ] consensusID : consensus_7462#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 192 fasta sequence [AACAAATCCGCATAGTTTACATTTCATTTTACGAATACCGAGAGAAGAAAGATCTTCTTTATCGACACGTGGTCGAAGATGTCGTGTATGGGTGAGCATATGAAGCATATTTTCCGACACTCCGTCACCTGGATGTACTACTCCGTGTTCTGCCCACTGATGAAAATAATAGTTAAATTTCGTTCCATAAAA] [+] EMBL CD193333 [AACAAATCCGCATAGTTTACATTTCATTTTACGAATACCGAGAGAAGAAAGATCTTCTTTATCGACACGTGGTCGAAGATGTCGTGTATGGGTGAGCATATGAAGCATATTTTCCGACACTCCGTCACCTGGATGTACTACTCCGTGTTCTGCCCACTGATGAAAATAATAGTTAAATTTCGTTCCATAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7462#0 CTTCCTGAACACTGGGGTGTTTGTTGTTTGTGTGCTAAAGAACTGCGTTCACCAAACGGT 60 consensus_7462#1 ------------------------------------------------------------ consensus_7462#0 TTGTTGGATCATGAAATGAGACATTTAGGTCTCTCTAGGTTCCGATGTGGAGTTCATAAT 120 consensus_7462#1 --AACAAATCCGCATAGTTTACATTTCATTTTACGAATACCGAGAGAAGAAAGATCTTCT 58 *** * * ****** * * * ** * * * * consensus_7462#0 GTTTCGTTCCTTGATCGGCGATCATGGCAAGTTCATATGAATGAACATCATGCATGCCCA 180 consensus_7462#1 TTATCGACACGTGGTCGAAGAT-GTCGTGTATGGGTGAGCATATGAAGCATATTTTCCGA 117 * *** * ** *** *** * * * * * ** * *** * ** * consensus_7462#0 CGTTCAGGTCCTTTATCTGTTCTTTTACGTCCGAATCCAGTTAATCAAAATGATTCTGGA 240 consensus_7462#1 CACTCCG-TCACCTGGATGTACTACTCCGTGTTCTGCCCACTGATGAAAATAATAGTTAA 176 * ** * ** * *** ** * *** ** * ** ***** ** * * consensus_7462#0 AGTGACCAGGATGAAGAAGATGATGAACTAGTTGAACAAGACACTGTCCCAGGTAGTGGT 300 consensus_7462#1 ATTTCGTTCCATAAAA-------------------------------------------- 192 * * ** ** consensus_7462#0 TTGCTCGCTGGACTTGCGAACGTATTCAACACAAATCTTTTAGTTGGTCGAATGGAAGCT 360 consensus_7462#1 ------------------------------------------------------------ consensus_7462#0 CCACAATGCGAAAAATGCAGTGATTATTTCCCATCAGCAGAAGTGCTTGCACAACATCTA 420 consensus_7462#1 ------------------------------------------------------------ consensus_7462#0 GACTTTTGTGATGGTGTTAGTTTCTCTCTTCGTACCCCTTTATCTCGAATCGGCGGTGGT 480 consensus_7462#1 ------------------------------------------------------------ consensus_7462#0 GTTTCGAAGACCATCTTAGCAGATGATTCATACACTAGGTCTGGAGATGATACAACTGTG 540 consensus_7462#1 ------------------------------------------------------------ consensus_7462#0 GAAGGTTCTGTTCCAAATGCTGATGAAGTGACATCAGACGCCAAAGATGATGCATGTGTT 600 consensus_7462#1 ------------------------------------------------------------ consensus_7462#0 TGCGGTATCTGTGGAACTCAAGTCAATTCACGTGATAAAATACTTCGACACTTCACTGTT 660 consensus_7462#1 ------------------------------------------------------------ consensus_7462#0 TATCACCTTCAATGCATTTTGTGTAATAACATCCTTCGGTCAATGGAAGAATTGTCTGAT 720 consensus_7462#1 ------------------------------------------------------------ consensus_7462#0 CATTATCATACACACATAAAAACTGATGCACCAAATGCCTTGGAAGAATTTGAGAATGAG 780 consensus_7462#1 ------------------------------------------------------------ consensus_7462#0 GAAGCTGAAATAGTGAAAAGTGATCCAGATAAAGAAGTAAACCTCAAGGATGGTACTAAT 840 consensus_7462#1 ------------------------------------------------------------ consensus_7462#0 AAAAAATCGGCAAATAAACTAATGACATGTGACATTTGTACAGAGTTTTATGGAACGAAA 900 consensus_7462#1 ------------------------------------------------------------ consensus_7462#0 TTAACTATTATTTT 914 consensus_7462#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||