cluster # 7474

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Schistosoma mansoni
cluster # 7474 cluster # 7474 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7474#0 length = 811 sequences # 4

consensus_7474#1 length = 510 sequences # 1

consensusID : consensus_7474#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 811
fasta sequence

                              [AATTCGGCACGAGCTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTACGAAATGGCAAAAGCGTATTTATTTATATCAGAGTAGTCATACAATAATAAATAAATATGAGATCATTTCATCTTGAACATGACATCCTTGTGGAGACATCATCCAAACCTCAAAAACGGTTCACGTCTTTCTAGAAAATGTGGATGAAGAGGTTCTCCATCCACAATGCTAAAGTAAATGCAATATAGAAATATACAGAAGAGAATGGTTTTGATCAGTAGATGTTTCACTGCATAGATT-AAGCAATGTCAGCTAATTCGATGTTTCTTATTGCCGTATTGTCATACACATTGATAAGTCAATTGGGGATAACTACATCGGATTCATGCAAATATTGTCTACAAATGTACGATGAAACGTATGAGAGGGGGTCATATATTGANGTCTACAAAAGCGTGGGGTCACTCTCACCACCATGGACACCTGAATCTGTTTGTGTACCCTTCGTAAATGACACGAAGAGAGAGCGTCCATACTGGTATTTATTTGACAACGTCAATTACACAGGTCGGATTACTGGTCTCGGACATGGTACCTGCATTGATGACTTCACGAAATCCGGATTCAAAGGCATTTCCTCTATTAAACGGTGTATTCAAACAAAGGATGGAAAAGTTGAATGTATCAATCAACCGAAACTGAGAAGGACATACTGTCGATTCTAATCAAGAAATGTAATGCGCTTATAATTCTTGGGGGGTTTTAACTAAATATATGCATATGAACTGATGAAAAAAAAAAAAAAAAAAACTCGCGACTAGTTCT]

[+] EMBL AF527011             [AATTCGGCACGAGCTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTACGAAATGGCAAAAGCGTATTTATTTATATCAGAGTAGTCATACAATAATAAATAAATATGAGATCATTTCATCTTGAACATGACATCCTTGTGGAGACATCATCCAAACCTCAAAAACGGTTCACGTCTTTCTAGAAAATGTGGATGAAGAGGTTCTCCATCCACAATGCTAAAGTAAATGCAATATAGAAATATACAGAAGAGAATGGTTTTGATCAGTAGATGTTTCACTGCATAGATT AAGCAATGTCAGCTAATTCGATGTTTCTTATTGCCGTATTGTCATACACATTGATAAGTCAATTGGGGATAACTACATCGGATTCATGCAAATATTGTCTACAAATGTACGATGAAACGTATGAGAGGGGGTCATATATTGANGTCTACAAAAGCGTGGGGTCACTCTCACCACCATGGACACCTGAATCTGTTTGTGTACCCTTCGTAAATGACACGAAGAGAGAGCGTCCATACTGGTATTTATTTGACAACGTCAATTACACAGGTCGGATTACTGGTCTCGGACATGGTACCTGCATTGATGACTTCACGAAATCCGGATTCAAAGGCATTTCCTCTATTAAACGGTGTATTCAAACAAAGGATGGAAAAGTTGAATGTATCAATCAACCGAAACTGAGAAGGACATACTGTCGATTCTAATCAAGAAATGTAATGCGCTTATAATTCTTGGGGGGTTTTAACTAAATATATGCATATGAACTGATGAAAAAAAAAAAAAAAAAAACTCGCGACTAGTTCT]
[-] EMBL AW146468             [                                                  TGGCAAAAGCGTATTTATTTATATCAGAGTAGTCATACAATAATAAATAAATATGAGATCATTTCATCTTGAACATGACATCCTTGTGGAGACATCATCCAAACCTCAAAAACGGTTCACGTCTTTCTAGAAAATGTGGATGAAGAGGTTCTCCATCCACAATGCTAAAGTAAATGCAATATAGAAATATACAGAAGAGAATGGTTTTGATCAGTAGATGTTTCACTGCATAGATTGAATCCATTTCGGCccgaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AI740231             [                                                    GCAAAAGCGTATTTATTTATATCAGAGTAGTCATACAATAATAAATAAATATGAGANCATTTCATCTTGAACATGACATCCTTGTGGAGACATCATCCCAACCNCNAAAACGGTTCACGTCTTTCTAGAAAATGTGGATGAAGAtt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AY028436             [                                                                                                                                                                                                                                                                                                                            ATTGCCGTATTGTCATACACATTGATAAGTCAATTGGGGATAACTACATCGGATTCATGCAAATATTGTCTACAATTGTACGATGAAACGTATGAGAGGGGTTCATATATTGAAGTCTACAAAAGCGTTGGCTCACTCTCACCACCATGGACACCTGGATCTGTTTGTGTACCCTTCGTAAATGACACGAAGAGAGAGCGTCCATACTGGTATTTATTTGACAACGTCAATTACACAGGTCGGATTACTGGTCTCGGACATGGTACCTGCATTGATGACTTCACGAAATCCGGATTCAAAGGCATTTCCTCTATTAAACGGTGTATTCAAACAAAGGATGGAAAAGTTGAATGTATCAATCAACCGAAACGGAGAAGGACATACTGTCGATTCTAATCAAGAAATGTAATGCGCTTATAATTCTTGTGTGCTCTTAACTAAATATATGCATATGAACTGATGAAAAAAAA                          ]




>consensus_7474#0
AATTCGGCACGAGCTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTACGAAATGGCAAAAGC
GTATTTATTTATATCAGAGTAGTCATACAATAATAAATAAATATGAGATCATTTCATCTT
GAACATGACATCCTTGTGGAGACATCATCCAAACCTCAAAAACGGTTCACGTCTTTCTAG
AAAATGTGGATGAAGAGGTTCTCCATCCACAATGCTAAAGTAAATGCAATATAGAAATAT
ACAGAAGAGAATGGTTTTGATCAGTAGATGTTTCACTGCATAGATTAAGCAATGTCAGCT
AATTCGATGTTTCTTATTGCCGTATTGTCATACACATTGATAAGTCAATTGGGGATAACT
ACATCGGATTCATGCAAATATTGTCTACAAATGTACGATGAAACGTATGAGAGGGGGTCA
TATATTGANGTCTACAAAAGCGTGGGGTCACTCTCACCACCATGGACACCTGAATCTGTT
TGTGTACCCTTCGTAAATGACACGAAGAGAGAGCGTCCATACTGGTATTTATTTGACAAC
GTCAATTACACAGGTCGGATTACTGGTCTCGGACATGGTACCTGCATTGATGACTTCACG
AAATCCGGATTCAAAGGCATTTCCTCTATTAAACGGTGTATTCAAACAAAGGATGGAAAA
GTTGAATGTATCAATCAACCGAAACTGAGAAGGACATACTGTCGATTCTAATCAAGAAAT
GTAATGCGCTTATAATTCTTGGGGGGTTTTAACTAAATATATGCATATGAACTGATGAAA
AAAAAAAAAAAAAAAACTCGCGACTAGTTCT

consensusID : consensus_7474#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 510
fasta sequence

                              [AGAGAGGAAGGGTTACAGAGAAGTTCCCCCCCAGATAAACAAAGCCACGAAATCGAGGTTCTTATGCCGTATGTCAACACATGATAAGCCAATGGGATAACCACACCGGATCCAGCAAAAAATGTCTACAATTGTACGATGAAACGTATGAGAGGGGTCATATAATGAAGTCTACAAAAGCGGTTGCTCACTCTCACCACCATGGACAACCTGGAACTGTTGTGTACCCTTCGTAAATGACACGGAAGAGAGAGCGTCCATACTGGTATTATTGACTTCGGCAATTACACAGGTCGGATTACTGGTCTCGGACATGGTACCTGCATTGATGACTTCACGAAATCCCGATTCAAAGGCATTCCTCTATTAAACGGTGTATTCAAACAAAGGATGGAAAAGTTGAATGTATCAATCAACCCGAAACTGAGAAGGACATACTGTCCGTTCTAATCCAAGGAAATGTAATGCGCCTTATAATTCTTGTGTGCTCTTAACTAAATATACGCATAT]

[-] EMBL AI820476             [AGAGAGGAAGGGTTACAGAGAAGTTCCCCCCCAGATAAACAAAGCCACGAAATCGAGGTTCTTATGCCGTATGTCAACACATGATAAGCCAATGGGATAACCACACCGGATCCAGCAAAAAATGTCTACAATTGTACGATGAAACGTATGAGAGGGGTCATATAATGAAGTCTACAAAAGCGGTTGCTCACTCTCACCACCATGGACAACCTGGAACTGTTGTGTACCCTTCGTAAATGACACGGAAGAGAGAGCGTCCATACTGGTATTATTGACTTCGGCAATTACACAGGTCGGATTACTGGTCTCGGACATGGTACCTGCATTGATGACTTCACGAAATCCCGATTCAAAGGCATTCCTCTATTAAACGGTGTATTCAAACAAAGGATGGAAAAGTTGAATGTATCAATCAACCCGAAACTGAGAAGGACATACTGTCCGTTCTAATCCAAGGAAATGTAATGCGCCTTATAATTCTTGTGTGCTCTTAACTAAATATACGCATAT]




>consensus_7474#1
AGAGAGGAAGGGTTACAGAGAAGTTCCCCCCCAGATAAACAAAGCCACGAAATCGAGGTT
CTTATGCCGTATGTCAACACATGATAAGCCAATGGGATAACCACACCGGATCCAGCAAAA
AATGTCTACAATTGTACGATGAAACGTATGAGAGGGGTCATATAATGAAGTCTACAAAAG
CGGTTGCTCACTCTCACCACCATGGACAACCTGGAACTGTTGTGTACCCTTCGTAAATGA
CACGGAAGAGAGAGCGTCCATACTGGTATTATTGACTTCGGCAATTACACAGGTCGGATT
ACTGGTCTCGGACATGGTACCTGCATTGATGACTTCACGAAATCCCGATTCAAAGGCATT
CCTCTATTAAACGGTGTATTCAAACAAAGGATGGAAAAGTTGAATGTATCAATCAACCCG
AAACTGAGAAGGACATACTGTCCGTTCTAATCCAAGGAAATGTAATGCGCCTTATAATTC
TTGTGTGCTCTTAACTAAATATACGCATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7474#0      AATTCGGCACGAGCTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTACGAAATGGCAAAAGC 60
consensus_7474#1      ------------------------------------------------------------
                                                                                  

consensus_7474#0      GTATTTATTTATATCAGAGTAGTCATACAATAATAAATAAATATGAGATCATTTCATCTT 120
consensus_7474#1      ------------------------------------------------------------
                                                                                  

consensus_7474#0      GAACATGACATCCTTGTGGAGACATCATCCAAACCTCAAAAACGGTTCACGTCTTTCTAG 180
consensus_7474#1      ------------------------------------------------------------
                                                                                  

consensus_7474#0      AAAATGTGGATGAAGAGGTTCTCCATCCACAATGCTAAAGTAAATGCAATATAGAAATAT 240
consensus_7474#1      ------------------------------------------------------------
                                                                                  

consensus_7474#0      ACAGAAGAGAATGGTTTTGATCAGTAGATGTTTCACTGCATAGATTAAGCAATGTCAGCT 300
consensus_7474#1      --AGAGAGGAAGGGTTACAG-----AGAAGTTCCCCCCCAGA---TAAACAAAGCCA-CG 49
                        ***   *** ****         *** *** * *  ** *   *** *** * ** * 

consensus_7474#0      AATTCGATGTTTCTTATTGCCGTATTGTCATACACATTGATAAGTCAATTGGGGATAACT 360
consensus_7474#1      AAATCGAGGTT-CTTAT-GCCGTAT-GTCA-ACACAT-GATAAGCCAAT--GGGATAACC 102
                      ** **** *** ***** ******* **** ****** ****** ****  ******** 

consensus_7474#0      ACATCGGATTCATGCAAATATTGTCTACAAATGTACGATGAAACGTATGAGAGGGGGTCA 420
consensus_7474#1      ACACCGGATCCA-GCAAAAAATGTCTACAATTGTACGATGAAACGTATGAGAGGGG-TCA 160
                      *** ***** ** ***** * ********* ************************* ***

consensus_7474#0      TATATTGANGTCTACAAAAGCGTGGGGTCACTCTCACCACCATGGACA-CCTGAATCTGT 479
consensus_7474#1      TATAATGAAGTCTACAAAAGCGGTTGCTCACTCTCACCACCATGGACAACCTGGAACTGT 220
                      **** *** *************   * ********************* **** * ****

consensus_7474#0      TTGTGTACCCTTCGTAAATGACACG-AAGAGAGAGCGTCCATACTGGTATTTATTTGACA 538
consensus_7474#1      T-GTGTACCCTTCGTAAATGACACGGAAGAGAGAGCGTCCATACTGGTATT--ATTGACT 277
                      * *********************** *************************   ***** 

consensus_7474#0      ACGTCAATTACACAGGTCGGATTACTGGTCTCGGACATGGTACCTGCATTGATGACTTCA 598
consensus_7474#1      TCGGCAATTACACAGGTCGGATTACTGGTCTCGGACATGGTACCTGCATTGATGACTTCA 337
                       ** ********************************************************

consensus_7474#0      CGAAATCCGGATTCAAAGGCATTTCCTCTATTAAACGGTGTATTCAAACAAAGGATGGAA 658
consensus_7474#1      CGAAATCCCGATTCAAAGGCATT-CCTCTATTAAACGGTGTATTCAAACAAAGGATGGAA 396
                      ******** ************** ************************************

consensus_7474#0      AAGTTGAATGTATCAATCAACC-GAAACTGAGAAGGACATACTGTCGATTCTAATC--AA 715
consensus_7474#1      AAGTTGAATGTATCAATCAACCCGAAACTGAGAAGGACATACTGTCCGTTCTAATCCAAG 456
                      ********************** ***********************  ********  * 

consensus_7474#0      GAAATGTAATGCGC-TTATAATTCTTGGGGGGTTTTAACTAAATATATGCATATGAACTG 774
consensus_7474#1      GAAATGTAATGCGCCTTATAATTCTTGTGTGCTCTTAACTAAATATACGCATAT------ 510
                      ************** ************ * * * ************* ******      

consensus_7474#0      ATGAAAAAAAAAAAAAAAAAAACTCGCGACTAGTTCT 811
consensus_7474#1      -------------------------------------