These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7475#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 755 fasta sequence [CCTTATTCGGCACGACGCGGCACGAGGTTAATGCTGCCGAAAGTGGAATATATGAAAATGAGCCAACTCGACGTGATAATGTAGTCCGTTATGATGACGATCAAACAGATGACTATCCAATTAATTCTGTGAAATGGGCATCTGAAGCGAAAAACAGATTCATACAGGAAGCATCTAAATCACAGATAACAACAGGAAGTAACAAGACTATTTTATTGGTTGAAGATGGTCATACAAATGGTAATGGCGATGGTGCATCAAAACAAGCACGATATACTACACAAGCTAAACAAGCCTTCTTAGAACGTCAAAAACAAGCGGAAGAAGCTGCAAAGAACAAAAGTCGACCAGATATCATTGATATATGGCAAGAACAATGCCCACACAGTGGAGTATTTGAAAATGTACCAGCTGCTCATACAGCTGATGTGGTAGTCACTGATGAATCCGAAGAAGACGATGAGGAAGAGGAGGAGCAATAAAGCCTTTCTAACCAAAAAAGTTTTATCGAATTCGTATTACCCACACATAAAATACGCTCTCACACATCATGTATACACTTGGAAGTATTATGTAAACCAGATGAATAATTGGTGACAATGTTACACCCAAATTCCGAAGAAATGACTTAACATTTCTAAGGAAGGTGCATGCATGTATAGCTTTTTTCAATCCATCTGCACATCTAGATATTTGAGAACTAAGCTTGATTGAGCCATGGCTCACTCCCTCTNTTTGGCACATATACAATCATA] [+] EMBL CD081811 [CCTTATTCGGCACGACGCGGCACGAGGTTAATGCTGCCGAAAGTGGAATATATGAAAATGAGCCAACTCGACGTGATAATGTAGTCCGTTATGATGACGATCAAACAGATGACTATCCAATTAATTCTGTGAAATGGGCATCTGAAGCGAAAAACAGATTCATACAGGAAGCATCTAAATCACAGATAACAACAGGAAGTAACAAGACTATTTTATTGGTTGAAGATGGTCATACAAATGGTAATGGCGATGGTGCATCAAAACAAGCACGATATACTACACAAGCTAAACAAGCCTTCTTAGAACGTCAAAAACAAGCGGAAGAAGCTGCAAAGAACAAAAGTCGACCAGATATCATTGATATATGGCAAGAACAATGCCCACACAGTGGAGTATTTGAAAATGTACCAGCTGCTCATACAGCTGATGTGGTAGTCACTGATGAATCCGAAGAAGACGATGAGGAAGAGGAGGAGCAATAAAGCCTTTCTAACCAAAAAAGTTTTATCGAATTCGTATTACCCACACATAAAATACGCTCTCACACATCATGTATACACTTGGAAGTATTATGTAAACCAGATGAATAATTGGTGACAATGTTACACCCAAATTCCGAAGAAATGACTTAACATTTCTAAGGAAGGTGCATGCATGTATAGCTTTTTTCAATCCATCTGCACATCTAGATATTTGAGAACTAAGCTTGATTGAGCCATGGCTCACTCCCTCTNTTTGGCACATATACAATCATA] [-] EMBL CD075542 [ GGCACGAGGTTAATGCTGCCGAAAGTGGAATATATGAAAATGAGCCAACTCGACGTGATAATGTAGTCCGTTATGATGACGATCAAACAGATGACTATCCAATTAATTCTGTGAAATGGGCATCTGAAGCGAAAAACAGATTCATACAGGAAGCATCTAAATCACAGATAACAACAGGAAGTAACAAGACTATTTTATTGGTTGAAGATGGTCATACAAATGGTAATGGCGATGGTGCATCAAAACAAGCACGATATACTACACAAGCTAAACAAGCCTTCTTAGAACGTCAAAAACAAGCGGAAGAAGCTGCAAAGAACAAAAGTCGACCAGATATCATTGATATATGGCAAGAACAATGCCCACACAGTGGAGTATTTGAAAATGTACCAGCTGCTCATACAGCTGATGTGGTAGTCACTGATGAATCCGAAGAAGACGATGAGGAAGAGGAGGAGCAATAAAGCCTTTCTAACCAAAAAAGTTTTATCGAATTCGTATTACCCACACATAAAATACGCTCTCACACATCATGTATACACTTGGAAGTATTATGTAAACCAGATGAATAATTGGTGACAATGTTACACCCAAATTCCGAAGAAATGACTTAACATTTCTAAGGAAGGTGCATGCATGTATAGCTTTTTTCAATCCATCTGCACATCTAGATATTTGAGAACTAAGCTTGATTGAGCCATGGCTCACTCCCTCTTTTTGGCACAGATA ] [+] EMBL CD062288 [ GAAATGGGCATCTGAAGCGAAAAACAGATTCATACAGGAAGCATCTAAATCACAGATAACAACAGGAAGTAACAAGACTATTTTATTGGTTGAAGATGGTCATACAAATGGTAATGGCGAAGGTGCATCAAAACAAGCACGATATACTACACAAGCTAAACAAGCCTTCTTAGAACGTCAAAAACAAGCGGAAGAAGCTGCAAAGAACAAAAGTCGACCAGATATCATTGATATATGGCAAGAACAATGCCCACACAGTGGAGTATTTGAAAATGTACCAGCTGCTCATACAGCTGATGTGGTAGTCACTGATGAATCCG ] consensusID : consensus_7475#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 524 fasta sequence [CCAAGACTTGATATACATGACGGTTATGGAGGTGTTTATGAGAATGAACCTGAAAAATTTGAAAATATCGCTAGAGCTGGTGAAACAAAAAACGATTTACCATCTGGTGTAAGTGCTAAAGAAAGACGTGAATTATTTTTAAAGAAAGCTGCTGATACTTCTGTTGTAAAGAGAGATAGTATAAAACTTATAGATATTAATGCTGCCGAAAGTGGAATATATGAAAATGAGCCAACTCGACGTGATAATGTAGTCCGTTATGATGACGATCAAACAGATGACTATCCAATTAATTCTGTGAAATGGGCATCTGAAGCGAAAAACAGATTCATACAGGAAGCATCTAAATCACAGATAACAACAGGAAGTAACAAGACTATTTTATTGGCTGAAGATGGTCATACAAATGGTAATGGCGATGGTGCATCAAAACAAGCACGATATACTACACAAGCTAAACAAGCCTTCTTAGAACGTCAAAAACAAGCGGAAGAAGCTGCAAAGAACAAAAGTCGACCAGATAT] [+] EMBL CD179618 [CCAAGACTTGATATACATGACGGTTATGGAGGTGTTTATGAGAATGAACCTGAAAAATTTGAAAATATCGCTAGAGCTGGTGAAACAAAAAACGATTTACCATCTGGTGTAAGTGCTAAAGAAAGACGTGAATTATTTTTAAAGAAAGCTGCTGATACTTCTGTTGTAAAGAGAGATAGTATAAAACTTATAGATATTAATGCTGCCGAAAGTGGAATATATGAAAATGAGCCAACTCGACGTGATAATGTAGTCCGTTATGATGACGATCAAACAGATGACTATCCAATTAATTCTGTGAAATGGGCATCTGAAGCGAAAAACAGATTCATACAGGAAGCATCTAAATCACAGATAACAACAGGAAGTAACAAGACTATTTTATTGGCTGAAGATGGTCATACAAATGGTAATGGCGATGGTGCATCAAAACAAGCACGATATACTACACAAGCTAAACAAGCCTTCTTAGAACGTCAAAAACAAGCGGAAGAAGCTGCAAAGAACAAAAGTCGACCAGATAT] [+] EMBL CD179633 [CCAAAACTTGATATACATGACAGTTGTGGAGGTGTTTATGAGAATGAACCTGAAAAATTTGAAAATATCGCTAGAGCTGGTGAAACAAAAAACGATTTACCATCTGGTGTAAGTGCTAAAGAAAGACGTGAATTATTTTTAAAGAAAGCTGCTGATACTTCTGTTGTAAAGAGAGATAGTATAAAACTTATAGATATTAATGCTGCCGAAAGTGGAATATATGAAAATGAGCCAACTCGACGTGATAATGTAGTCCGTTATGATGACGATCAAACAGATGACTATCCAATTAATTCTGTGAAATGGGCATCTGAAGCGAGAAACAGATTCATACAGGAAGCATCTAAATCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7475#0 ------------------------------------------------------------ consensus_7475#1 CCAAGACTTGATATACATGACGGTTATGGAGGTGTTTATGAGAATGAACCTGAAAAATTT 60 consensus_7475#0 ------------------------------------------------------------ consensus_7475#1 GAAAATATCGCTAGAGCTGGTGAAACAAAAAACGATTTACCATCTGGTGTAAGTGCTAAA 120 consensus_7475#0 -------------------------------------------------CCTTATTCGGC 11 consensus_7475#1 GAAAGACGTGAATTATTTTTAAAGAAAGCTGCTGATACTTCTGTTGTAAAGAGAGATAGT 180 * * consensus_7475#0 ACGACGCGGCACGAGGTTAATGCTGCCGAAAGTGGAATATATGAAAATGAGCCAACTCGA 71 consensus_7475#1 ATAAAACTTATAGATATTAATGCTGCCGAAAGTGGAATATATGAAAATGAGCCAACTCGA 240 * * * ** ******************************************** consensus_7475#0 CGTGATAATGTAGTCCGTTATGATGACGATCAAACAGATGACTATCCAATTAATTCTGTG 131 consensus_7475#1 CGTGATAATGTAGTCCGTTATGATGACGATCAAACAGATGACTATCCAATTAATTCTGTG 300 ************************************************************ consensus_7475#0 AAATGGGCATCTGAAGCGAAAAACAGATTCATACAGGAAGCATCTAAATCACAGATAACA 191 consensus_7475#1 AAATGGGCATCTGAAGCGAAAAACAGATTCATACAGGAAGCATCTAAATCACAGATAACA 360 ************************************************************ consensus_7475#0 ACAGGAAGTAACAAGACTATTTTATTGGTTGAAGATGGTCATACAAATGGTAATGGCGAT 251 consensus_7475#1 ACAGGAAGTAACAAGACTATTTTATTGGCTGAAGATGGTCATACAAATGGTAATGGCGAT 420 **************************** ******************************* consensus_7475#0 GGTGCATCAAAACAAGCACGATATACTACACAAGCTAAACAAGCCTTCTTAGAACGTCAA 311 consensus_7475#1 GGTGCATCAAAACAAGCACGATATACTACACAAGCTAAACAAGCCTTCTTAGAACGTCAA 480 ************************************************************ consensus_7475#0 AAACAAGCGGAAGAAGCTGCAAAGAACAAAAGTCGACCAGATATCATTGATATATGGCAA 371 consensus_7475#1 AAACAAGCGGAAGAAGCTGCAAAGAACAAAAGTCGACCAGATAT---------------- 524 ******************************************** consensus_7475#0 GAACAATGCCCACACAGTGGAGTATTTGAAAATGTACCAGCTGCTCATACAGCTGATGTG 431 consensus_7475#1 ------------------------------------------------------------ consensus_7475#0 GTAGTCACTGATGAATCCGAAGAAGACGATGAGGAAGAGGAGGAGCAATAAAGCCTTTCT 491 consensus_7475#1 ------------------------------------------------------------ consensus_7475#0 AACCAAAAAAGTTTTATCGAATTCGTATTACCCACACATAAAATACGCTCTCACACATCA 551 consensus_7475#1 ------------------------------------------------------------ consensus_7475#0 TGTATACACTTGGAAGTATTATGTAAACCAGATGAATAATTGGTGACAATGTTACACCCA 611 consensus_7475#1 ------------------------------------------------------------ consensus_7475#0 AATTCCGAAGAAATGACTTAACATTTCTAAGGAAGGTGCATGCATGTATAGCTTTTTTCA 671 consensus_7475#1 ------------------------------------------------------------ consensus_7475#0 ATCCATCTGCACATCTAGATATTTGAGAACTAAGCTTGATTGAGCCATGGCTCACTCCCT 731 consensus_7475#1 ------------------------------------------------------------ consensus_7475#0 CTNTTTGGCACATATACAATCATA 755 consensus_7475#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||