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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7484#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 513 fasta sequence
[AATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAAGTCTGTGTCAGACAACCAGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAGAGACCGAATGTGAATACTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATC-GAACCGGTTCCTGTGACTGTGCAACCGTCACTCCTAAACAAARGGTAAAGGGTTAAARGCTATGATGGRGARAGGCGAACTTGTTCCTTTGGCCGTTGTTTTAGCTTTACTTAAAGGGGCAAWTGTTT]
[+] EMBL CD193019 [AATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAAGTCTGTGTCAGACAACCAGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAGAGACCGAATGTGAATACTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATC GAACCGGTTCCTGTGACTGTG ]
[+] EMBL SMRAP061 [ ACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGRBCGGAACCGGTTCCTGTGACTGABCAACCGTCACTCCTAAACAAARGGTAAAGGGTTAAARGCTATGATGGRGARAGGCGAACTTGTTCCTTTGGCCGTTGTTTTAGCTTTACTTAAAGGGGCAAWTGTTT]
consensusID : consensus_7484#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence
[ATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCCAATGGCAGCTTTCGGGGAAAAGACCGATTGTGATTGCTGAATTGCAAGTGGTTAGGGTGAGCACACCGGTGGTCAGTCTGACCACACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGA]
[+] EMBL CD069426 [ATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCCAATGGCAGCTTTCGGGGAAAAGACCGATTGTGATTGCTGAATTGCAAGTGGTTAGGGTGAGCACACCGGTGGTCAGTCTGACCACACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGA]
consensusID : consensus_7484#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence
[GTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCGAATGTGAATACTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTGGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAGGTCTGTGTCAGACAACCAGTGAACTAGTGAAA]
[+] EMBL CD194733 [GTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCGAATGTGAATACTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTGGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAGGTCTGTGTCAGACAACCAGTGAACTAGTGAAA]
consensusID : consensus_7484#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence
[CACGGTACCCTGCCATCACCGACTGCACCTTTCGTGAAGAGACCAATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAGAGACCAATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGG]
[+] EMBL CD168534 [CACGGTACCCTGCCATCACCGACTGCACCTTTCGTGAAGAGACCAATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAGAGACCAATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7484#1 ------------------------------------------------------------
consensus_7484#3 ------------------------------------------------------------
consensus_7484#0 AATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACT 60
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 ------------------------------------------------------------
consensus_7484#3 ------------------------------------------------------------
consensus_7484#0 GTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAAGTCTGTGTCAGACAACC 120
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 ------------------------------------------------------------
consensus_7484#3 -------------------------------------------------------CACGG 5
consensus_7484#0 AGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGA 180
consensus_7484#2 ---GTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGT 57
consensus_7484#1 -----------------------------------------ATTGTGCATGGTGGATTCT 19
consensus_7484#3 TACCCTGCCATCACCGACTGCACCTTTCGTGAAG-AGACCAATTGTGCATGGTGGATTCT 64
consensus_7484#0 AAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAG-AGACCGAATGTGAATACTGAAGTGC 239
consensus_7484#2 TCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCGAATGTGAATACTGAAGTGC 117
* **** ** ** * *
consensus_7484#1 TGGAG--TGAGATACATGCACCAGTTGT---TCCAGTCCAGCAGCCACCGAAACCC-ATC 73
consensus_7484#3 TGGAG--TGAGATACATGCACCAGTTGT---TCCAGTCCAGCAGCCACCGAAACCC-ATC 118
consensus_7484#0 AAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTAGAACGGGAAG 299
consensus_7484#2 AAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTGGAACGGGAAG 177
* * * * * **** ***** ** * ** *** *
consensus_7484#1 CAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCG 133
consensus_7484#3 CAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCG 178
consensus_7484#0 TGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGA--- 356
consensus_7484#2 TGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGA--- 234
* * ** ****** * * *** * ** *** * * * **
consensus_7484#1 ACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCCAATGGCAGCTTTCGGGGA 193
consensus_7484#3 ACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTG-CAGCTTTCGTG-A 236
consensus_7484#0 --TGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTC--CTG-TGACT---GTGCA 408
consensus_7484#2 --TGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTC--CTG-TGACT---GTGAA 286
* ***** ** ** ** * * *** ** ** * * *
consensus_7484#1 AAAGACCGATTGTGATTGCTGAATTGCAAGTGGTTAGGGTGAGCACACCGGTGGT--CAG 251
consensus_7484#3 AGAGACCAATTGTGCATGGTGGATTCTTGGAG--TGAGATACATGCACCAGTTGTTCCAG 294
consensus_7484#0 ACCGTCA----CTCCTAAACAAARGGTAAAGGGTTAAARGCTATG--ATGGRGAR-A-GG 460
consensus_7484#2 AACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAGGTCTGTG--TCAGACAA-CCAG 343
* * * * * * *
consensus_7484#1 TCTGACCAC-ACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTG 310
consensus_7484#3 TCCAGCAGCCACCGAAACCCATCCAAACATTGG--------------------------- 327
consensus_7484#0 CGAACTTGTTCCTTTGGCCGTTGTTTTAGCTTTACTTAAAGGGGCAAWTGTTT------- 513
consensus_7484#2 TGAACTAGTGAAA----------------------------------------------- 356
consensus_7484#1 GACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAAC 370
consensus_7484#3 ------------------------------------------------------------
consensus_7484#0 ------------------------------------------------------------
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 CGGTTCCTGTGACTGTGA 388
consensus_7484#3 ------------------
consensus_7484#0 ------------------
consensus_7484#2 ------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||