These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 658 fasta sequence [CAATAGATAACTGTTGTAATGCGATTATTTCATTAGGATCTGGTTTCT-GACC--T-TT-TCCAATGTCGAGCATATTCTGACACTACACGTGGATCTAACGCAAAGTGTTCAAATAAAGTTGATGGTAATTCAGCTAAATCAGTACTACACCGTGTCCCAGTAACATGTTGATATCGTGTACGTGCAAGCATAGAATGTAATGCATGTCCCCATTCATGAAATAAATTTTCAACTTGTCCTATACTAAGCAGTGGTGGTTTAGAATTCGATTCAGGCGGAGATACCGTCAATTGAAGTGTTATAATTGGAGATTGATATGATCGTTTACTAGAACCATTATCTAGGCATCGGCCACCACGTATAGTGTAATGGCAATCTTGGGCAGGTTTACCAGGACGATCAAGCAGATCACAATAGACTATTCCAATTGGTTCTGTCGAATTATTCTTATTCGAATACACATGAACTTTGATAACAGATGGATGCCATACTTCTCCAGGTTGTACTGGTACAACATCTAGACGTAATCCAAATAGACAATTAGCCAATTGACTTACACCTTCCATACATGCACCCAATGAAAAATAATCTGTCAAATGATGACTACATAATGCTTGGCGTTTAACACCAACTGCATAGGGTAAATCACTAGGCCAAATTA] [+] EMBL CD132973 [CAATAGATAACTGTTGTAATGCGATTATTTCATTAGGATCTGGTTTCT GACC TGTTCTCCAATGTCGAGCATATTCTGACACTACACGTGGATCTAACGCAAAGTGTTCAAATAAAGTTGATGGTAATTCAGCTAGATCAGTACTACACCGTGTCCCAGTAACATGTTGATATCGTGTACGTGCAAGCATAGAATGTAATGCATGTCCCCATTCATGAAATAAATTTTCAACTTGTCCTATACTAAGCAGTGGTGGTTTAGAATTCGATTCAGGCGGAGATACCGTCAATTGAAGTGTTATAATTGGAGATTGATATGATCGTTTACTAGAACCATTATCTAGGCATCGGCCACCACGTATAGTGTAATGGCAATCTTG ] [-] EMBL CD133019 [ AATTGTTGTAATGCGATTATTTCATTAGGATCTGGTTTCT GACCTGT TT TCCAATGTCGAGCATATTCTGACACTACACGTGGATCTAACGCAAAGTGTTCAAATAAAGTTGATGGTAATTCAGCTAAATCAGTACTACACCGTGTCCCAGTAACATGTTGATATCGTGTACGTGCAAGCATAGAATGTAATGCATGTCCCCATTCATGAAATAAATTTTCAACTTGTCCTATACTAAGCAGTGGTGGTATAGAATTCGATTCAGGCGGAGATACCGTCAATTGAAGTGTTATAATTGGAGATTGATATGATCGTTTACTAGAACCATTATCTAGGCATCGGCCACCACGTATAGTGTGTTGGCAATCTTGG ] [+] EMBL CD062492 [ ggTTCTGGAGC T TT TCCAATGTCGAGCATATTCTGACACTACACGTGGATCTAACGCAAAGTGTTCAAATAAAGTTGATGGTAATTCAGCTAAATCAGTACTACACCGTGTCCCAGTAACATGTTGATATCGTGTACGTGCAAGCATAGAATGTAATGCATATCCCCATTCATGAAATAAATTTTCAACTTGTCCTATACTAAGCAGTGGTGGTTTAGAATTCGATTCAGGCGGAGATACCGTCAATTGAAGTGTTATAATTGGAGATTGATATGATCGTTTACTAGAACCATTATCTAGGCATCGGCCACCACGTATAGTGTAATGGCAATCTTGGGCAGGTTTACCAGGACGATCAAGCAGATCACAATAGACTATTCCAATTGGTTCTGTCGAATTATTCTTATTCGAATACA ] [-] EMBL CD148775 [ CACGTATAGTGTAATGGCAATCTTGGGCAGGTTTACCAGGACGATCAAGCAGATCACAATAGACTATTCCAATTGGTTCTGTCGAATTATTCTTATTCGAATACACATGAACTTTGATAACAGATGGATGCCATACTTCTCCAGGTTGTACTGGTACAACATCTAGACGTAATCCAAATAGACAATTAGCCAATTGACTTACACCTTCCATACATGCACCCAATGAAAAATAATCTGTCAAATGATGACTACATAATGCTTGGCGTTTAACACCAACTGCATAGGGTAAATCACTAGGCCAAATTA] consensusID : consensus_7488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 213 fasta sequence [TTTTTTTTTTTTCATTACAAATTTGTTAATGATAGCAAAAAAGCAATGATAAAAACAGATCTATGATAAACAATGTAAATAAATACATTTCTTTTAGAATAAAAGATCATTTTGGTAAATTTTATGGATCAAAAATTGATCTGAAAAATAAAAAAGAAACCATAGTGAATGTTAAAGCAAAAAGCGATAAGAAAAAATTAGTGTATGACACTT] [+] EMBL AI395122 [TTTTTTTTTTTTCATTACAAATTTGTTAATGATAGCAAAAAAGCAATGATAAAAACAGATCTATGATAAACAATGTAAATAAATACATTTCTTTTAGAATAAAAGATCATTTTGGTAAATTTTATGGATCAAAAATTGATCTGAAAAATAAAAAAGAAACCATAGTGAATGTTAAAGCAAAAAGCGATAAGAAAAAATTAGTGTATGACACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7488#0 CAATAGATAACTGTTGTAATGCGATTATTTCATTAGGATCTGGTTTCTGACCTTTTCCAA 60 consensus_7488#1 ------------------------------------------------------------ consensus_7488#0 TGTCGAGCATATTCTGACACTACACGTGGATCTAACGCAAAGTGTTCAAATAAAGTTGAT 120 consensus_7488#1 ------------------------------------------------------------ consensus_7488#0 GGTAATTCAGCTAAATCAGTACTACACCGTGTCCCAGTAACATGTTGATATCGTGTACGT 180 consensus_7488#1 ------------------------------------------------------------ consensus_7488#0 GCAAGCATAGAATGTAATGCATGTCCCCATTCATGAAATAAATTTTCAACTTGTCCTATA 240 consensus_7488#1 ------------------------------------------------------------ consensus_7488#0 CTAAGCAGTGGTGGTTTAGAATTCGATTCAGGCGGAGATACCGTCAATTGAAGTGTTATA 300 consensus_7488#1 ------------------------------------------------------------ consensus_7488#0 ATTGGAGATTGATATGATCGTTTACTAGAACCATTATCTAGGCATCGGCCACCACGTATA 360 consensus_7488#1 ------------------------------------------------------------ consensus_7488#0 GTGTAATGGCAATCTTGGGCAGGTTTACCAGGACGATCAAGCAGATCACAATAGACTATT 420 consensus_7488#1 ------------------------------------------------------------ consensus_7488#0 CCAATTGGTTCTGTCGAATTATTCTTATTCGAATACACATGAACTT-TGATAACAGATGG 479 consensus_7488#1 ------------------TTTTTTTTTTTTCATTACAAATTTGTTAATGATAGCAAA--A 40 ** ** ** ** * **** ** * ***** ** * consensus_7488#0 ATGCCATACTTCTCCAGGTTGTACTGGTACAACATCTAGACGTAATCCAAATAGACAATT 539 consensus_7488#1 AAGCAATGATAAAAACAGATCTA-TGATAAACAATGTAAATA-AATACATTT---CTTTT 95 * ** ** * * * ** ** ** * ** ** * *** ** * * ** consensus_7488#0 AGCCAATTGACTTACACCTTCCATACATGCACCCAATGAAAAATAATCTGTCAAATGATG 599 consensus_7488#1 AG--AATAAAAGATCATTTTGGTAAATTTTATGGATCAAAAATTGATCTGAAAAATAAAA 153 ** *** * ** ** * * * * **** * ***** **** * consensus_7488#0 ACTACATAATGCTTGGCGTTTAA-CACCAACTGCATAGGGTAAATCACTAGGCCAAATTA 658 consensus_7488#1 AAGAAACCATAGTGAATGTTAAAGCAAAAAGCGATAAGAAAAAATTAGTGTATGACACTT 213 * * * ** * *** ** ** ** * ** **** * * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||