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Schistosoma mansoni
cluster # 7495 cluster # 7495       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7495#0 length = 1196 sequences # 3  
consensus_7495#1 length = 816 sequences # 2  

consensusID : consensus_7495#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1196
fasta sequence
                              [GAGCCATATTCGGCCGAGGTCTATGTGGTCATGTTGGTTGTGGTCGTTATGGTCAAAAACATGCACAGGTGCATTTTGAAGAAACAGGACATACATTCGCCTTAGAGCTCGGCAAAACATTGGTCTGGGATTACGCTGATGATGCATATGTTCATCGGCTAGCTGTTAATCACGAGGATGGAAAATTAGTCCAGCTTGGGCCCAGTAGTGAGACTGGTAACAAAAAGCTAGACATAATTAGCATGGAATTCAGTGCTATCTTAACAAGTCAACTGGAATCACAACGTGCATACTTTGAGTCCCAACTGGATTTAATAACTACTCAGTCAAATATGCGTCTCGAAGAAATGGAATCCAGTGTCGAATCGGCCTTATCCGCTGCGCAAACAGCCGAAAAGAAACTCTCTGAAGTCATAAAAGAGAACCTAGTCATCAGTCGTAAATTGCGACAAGCCACATCATTAGCTCAACGTTTACAAAGGGATTTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAATTACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGACAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAAATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAANAAGCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCTGTCATCTANCTTGTCAGTTACTCAATCATCGATAAAAAAAGNTGTATATGTATATATATATATATAGTTTGGCAAAAGTATTGTCTNTATTNTATAAAAGATATATCTAANTCTACTTTCTGGTGGTTATTCAAAATGCACGACCTTCTCTGATGTTTTGATCTTTGTTCAAACTATAAATCCTGATGTTTATGAATCTTATGATTCTATTAACTCAAATCTAAAACCATAGANNTAATAATGATTTGCGGTCTGATCGATCATGTGACGATAAGGTTTGCTGATATGGATTTCATTNGNGTTGTAGGGACTGCATACAAANTTGCTCTACTACCTGACTATATGACTATTTATAA]

[+] EMBL CD081779             [GAGCCATATTCGGCCGAGGTCTATGTGGTCATGTTGGTTGTGGTCGTTATGGTCAAAAACATGCACAGGTGCATTTTGAAGAAACAGGACATACATTCGCCTTAGAGCTCGGCAAAACATTGGTCTGGGATTACGCTGATGATGCATATGTTCATCGGCTAGCTGTTAATCACGAGGATGGAAAATTAGTCCAGCTTGGGCCCAGTAGTGAGACTGGTAACAAAAAGCTAGACATAATTAGCATGGAATTCAGTGCTATCTTAACAAGTCAACTGGAATCACAACGTGCATACTTTGAGTCCCAACTGGATTTAATAACTACTCAGTCAAATATGCGTCTCGAAGAAATGGAATCCAGTGTCGAATCGGCCTTATCCGCTGCGCAAACAGCCGAAAAGAAACTCTCTGAAGTCATAAAAGAGAACCTAGTCATCAGTCGTAAATTGCGACAAGCCACATCATTAGCTCAACGTTTACAAAGGGATTTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAATTACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGACAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAAATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAANAAGCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCTGTCATCTANCTTGTCAGTTACTCAATCATCGATAAAAAAAGNTGTATATGTATATATATATATATAGTTTGGCAAAAGTATTGTCTNTATTNTATAAAAGATATATCTAANTCTACTTTCTGGTGGTTATTCAAAATGCACGACCTTCTCTGATGTTTTGATCTTTGTTCAAACTATAAATCCTGATGTTTATGAATCTTATGATTCTATTAACTCAAATCTAAAACCATAGANNTAATAATGATTTGCGGTCTGATCGATCATGTGACGATAAGGTTTGCTGATATGGATTTCATTNGNGTTGTAGGGACTGCATACAAANTTGCTCTACTACCTGACTATATGACTATTTATAA]
[-] EMBL CD186534             [                                                                                                      TAGAGCTCGGCAAAACATTGGTCTGGGATTACGCTGATGATGCATATGTTCATCGGCTAGCTGTTAATCACGAGGATGGAAAATTAGTCCAGCTTGGGCCCAGTAGTGAGACTGGTAACAAAAAGCTAGACATAATTAGCATGGAATTCAGTGCTATCTTAACAAGTCAACTGGAATCACAACGTGCATACTTTGAGTCCCAACTGGATTTAATAACTACTCAGTCAAATATGCGTCTCGAAGAAATGGAATCCAGTGTCGAATCGGCCTTATCCGCTGCGCAAACAGCCGAAAAGAAACTCTCTGAAGTCATAAAAGAGAACCTAGTCATCAGTCGTAAATTGCGACAAGCCACATCATTAGCTCAACGTTTACAAAGGGATTTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD187304             [                                                                                                                                                                                                                                                                                           ACGTGCATACTTTGAGTCCCAACTGGATTTAATAACTACTCAGTCATATATGCGTCTCGAAGAAATGGAATCCAGTGTCGAATCGGCCTTATCCGCTGCGCAAACAGCCGAAAAGAAACCCTCTGAAGTCATAGAAGAGAACCTAGTCATCAGTCGTAAATTGCGACAAGCCACATCATTAGCTCAACGTTTACAAAGGGATTTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAATTACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGACAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCAGGCAGTTCACAAAAAATAAATCGAAGACGACGTAAACGCTAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]


>consensus_7495#0 GAGCCATATTCGGCCGAGGTCTATGTGGTCATGTTGGTTGTGGTCGTTATGGTCAAAAAC ATGCACAGGTGCATTTTGAAGAAACAGGACATACATTCGCCTTAGAGCTCGGCAAAACAT TGGTCTGGGATTACGCTGATGATGCATATGTTCATCGGCTAGCTGTTAATCACGAGGATG GAAAATTAGTCCAGCTTGGGCCCAGTAGTGAGACTGGTAACAAAAAGCTAGACATAATTA GCATGGAATTCAGTGCTATCTTAACAAGTCAACTGGAATCACAACGTGCATACTTTGAGT CCCAACTGGATTTAATAACTACTCAGTCAAATATGCGTCTCGAAGAAATGGAATCCAGTG TCGAATCGGCCTTATCCGCTGCGCAAACAGCCGAAAAGAAACTCTCTGAAGTCATAAAAG AGAACCTAGTCATCAGTCGTAAATTGCGACAAGCCACATCATTAGCTCAACGTTTACAAA GGGATTTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGC GCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAAT TACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGA CAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAA ATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAANAA GCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCT GTCATCTANCTTGTCAGTTACTCAATCATCGATAAAAAAAGNTGTATATGTATATATATA TATATAGTTTGGCAAAAGTATTGTCTNTATTNTATAAAAGATATATCTAANTCTACTTTC TGGTGGTTATTCAAAATGCACGACCTTCTCTGATGTTTTGATCTTTGTTCAAACTATAAA TCCTGATGTTTATGAATCTTATGATTCTATTAACTCAAATCTAAAACCATAGANNTAATA ATGATTTGCGGTCTGATCGATCATGTGACGATAAGGTTTGCTGATATGGATTTCATTNGN GTTGTAGGGACTGCATACAAANTTGCTCTACTACCTGACTATATGACTATTTATAA



consensusID : consensus_7495#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 816
fasta sequence
                              [CCACATCATAGCTCAACGTTT-CAAAGGGA-TTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAATTACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGACAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAAATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAAAAAGCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCTGTCATCTACTTGTCAGTTTACTCAATCATCGATAAAAAAAAGTTGTATATG--TATATATATATATATAGTTTGTCAAAAGTATTGTCTTTATTTTATTAAAGATTATATCTAATTCTACTTTCTGTTGTTTTATTCAAAATTGCACGACCTTTCTCTGCATGTATTTGATCTTTGTTTCAACTTAATAAATCTTGATTGTTTTATGAATCTTTATGATTTCTATTAAACTTCAAAATCTAAAAAAACCATAAGATTAAATTAAAATAGATTTTGCGGATCATGTATCGAATCAGTGTTGTACGAATAAAGTGTTTTTGCTGTATATTGTGATTTTTCATTTGGTGTATTGTTAGTGTGAACTGTCGATAACAGAAGTTATGCATCTAAACATACACTGAGCTTATCAATGACTAATTTTGAATAAAATACAAC]

[-] EMBL CD075510             [CCACATCATAGCTCAACGTTT CAAAGGGA TTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAATTACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGACAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAAATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAAAAAGCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCTGTCATCTACTTGTCAGTTTACTCAATCATCGATAAAAAAAAGTTGTATATG  TATATATATATATATAGTTTGTCAAAAGTATTGTCTTTATTTTATTAAAGATTATATCTAATTCTACTTTCTGTTGTTTTATTCAAAATTGCACGACCTTTCTCTGCATGTATTTGATCTTTGTTTCAACTTAATAAATCTTGATTGTTTTATGAATCTTTATGATTTCTATTAAACTTCAAAATCTAAAAAAACCATAAGATTAAATTAAAATAGATTTTGCGGATCATGTATCGAATCAGTGTTGTACGAATAAAGTGTTTTTGCTGTATATTGTGATTTTTCATTTGGTGTATTGTTAGTGTGAACTGTCGATAACAGAAGTTATGCATCTAAACATACACTGAGCTTATCAATGACTAATTTTGAATAAAATACAAC]
[-] EMBL CD076951             [     catTAGCTCAACGTTTACAAAGGGATTTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAATTACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGACAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAAATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAAAAAGCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCTGTCATCTACTTGTCAGTTTACTCAATCATCGATAAAAAAAAGTTGTATATGTATATATATATATATATAGTTTGTCAAAAGTATTGTCTTTATTTTATTAAAGATTATATCTAATTCTACTTTCTGTTGTTTTATTCAAAATTGCACGACCTTTCTCTGCATGTATTTGATCTTTGTTTCAACTTAATAAATCTTGATTGTTTTATGAATCTTTATGATTTCTATTAAACTTCAAAATCTAAAAAAACCATAAGATTAAATTAAAATAGATTTTGCGGATCATGTATCGAATCAGTGTTGTACGAATAAAGTGT                                                                                                                        ]


>consensus_7495#1 CCACATCATAGCTCAACGTTTCAAAGGGATTGGAAGAAGAACGTGCTTTAAATCAAAGTT TACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAA CAGCTCGTGCAGAATGTAGAGAATTACTATTAAACTTGGAATTGCGAGATAAATTAAATG AATTAAACACAAGTAAAGAGCTGACAAAAGATGAACTCGAAACATGTGAAATCTCTTTAC AACCCGGCAGTTCACAAAAAATAAATCGAAGACGACGTAAACGCTAAAATCCTTTCTACA GAGATGTCTACTAAAGAAAAAAAAGCTGTCAGATGAATGATATAGTCTTATCACATTTGA CAGTATTATATATCTTCGCTTTCTGTCATCTACTTGTCAGTTTACTCAATCATCGATAAA AAAAAGTTGTATATGTATATATATATATATAGTTTGTCAAAAGTATTGTCTTTATTTTAT TAAAGATTATATCTAATTCTACTTTCTGTTGTTTTATTCAAAATTGCACGACCTTTCTCT GCATGTATTTGATCTTTGTTTCAACTTAATAAATCTTGATTGTTTTATGAATCTTTATGA TTTCTATTAAACTTCAAAATCTAAAAAAACCATAAGATTAAATTAAAATAGATTTTGCGG ATCATGTATCGAATCAGTGTTGTACGAATAAAGTGTTTTTGCTGTATATTGTGATTTTTC ATTTGGTGTATTGTTAGTGTGAACTGTCGATAACAGAAGTTATGCATCTAAACATACACT GAGCTTATCAATGACTAATTTTGAATAAAATACAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7495#0      GAGCCATATTCGGCCGAGGTCTATGTGGTCATGTTGGTTGTGGTCGTTATGGTCAAAAAC 60
consensus_7495#1      ------------------------------------------------------------
                                                                                  

consensus_7495#0      ATGCACAGGTGCATTTTGAAGAAACAGGACATACATTCGCCTTAGAGCTCGGCAAAACAT 120
consensus_7495#1      ------------------------------------------------------------
                                                                                  

consensus_7495#0      TGGTCTGGGATTACGCTGATGATGCATATGTTCATCGGCTAGCTGTTAATCACGAGGATG 180
consensus_7495#1      ------------------------------------------------------------
                                                                                  

consensus_7495#0      GAAAATTAGTCCAGCTTGGGCCCAGTAGTGAGACTGGTAACAAAAAGCTAGACATAATTA 240
consensus_7495#1      ------------------------------------------------------------
                                                                                  

consensus_7495#0      GCATGGAATTCAGTGCTATCTTAACAAGTCAACTGGAATCACAACGTGCATACTTTGAGT 300
consensus_7495#1      ------------------------------------------------------------
                                                                                  

consensus_7495#0      CCCAACTGGATTTAATAACTACTCAGTCAAATATGCGTCTCGAAGAAATGGAATCCAGTG 360
consensus_7495#1      ------------------------------------------------------------
                                                                                  

consensus_7495#0      TCGAATCGGCCTTATCCGCTGCGCAAACAGCCGAAAAGAAACTCTCTGAAGTCATAAAAG 420
consensus_7495#1      ------------------------------------------------------------
                                                                                  

consensus_7495#0      AGAACCTAGTCATCAGTCGTAAATTGCGACAAGCCACATCATTAGCTCAACGTTTACAAA 480
consensus_7495#1      ---------------------------------CCACATCAT-AGCTCAACGTTT-CAAA 25
                                                       ********* ************ ****

consensus_7495#0      GGGATTTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGC 540
consensus_7495#1      GGGATT-GGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGC 84
                      ****** *****************************************************

consensus_7495#0      GCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAAT 600
consensus_7495#1      GCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAAT 144
                      ************************************************************

consensus_7495#0      TACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGA 660
consensus_7495#1      TACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGA 204
                      ************************************************************

consensus_7495#0      CAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAA 720
consensus_7495#1      CAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAA 264
                      ************************************************************

consensus_7495#0      ATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAANAA 780
consensus_7495#1      ATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAAAAA 324
                      ********************************************************* **

consensus_7495#0      GCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCT 840
consensus_7495#1      GCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCT 384
                      ************************************************************

consensus_7495#0      GTCATCTANCTTGTCAGTT-ACTCAATCATCGATAAAAAAA-GNTGTATATGTATATATA 898
consensus_7495#1      GTCATCTAC-TTGTCAGTTTACTCAATCATCGATAAAAAAAAGTTGTATATGTATATATA 443
                      ********  ********* ********************* * ****************

consensus_7495#0      TATATATAGTTTGGCAAAAGTATTGTCTNTATTNTATAAAAGAT-ATATCTAANTCTACT 957
consensus_7495#1      TATATATAGTTTGTCAAAAGTATTGTCTTTATTTTATTAAAGATTATATCTAATTCTACT 503
                      ************* ************** **** *** ****** ******** ******

consensus_7495#0      TTCTGGTGGTT-ATTCAAAAT-GCACGACCTT-CTCTG-ATGT-TTTGATCTTTGTTCAA 1012
consensus_7495#1      TTCTGTTGTTTTATTCAAAATTGCACGACCTTTCTCTGCATGTATTTGATCTTTGTTTCA 563
                      ***** ** ** ********* ********** ***** **** *************  *

consensus_7495#0      ACT--ATAAATCCTGATG--TTTATGAATCTT-ATGATT-CTATTAACTC---AAATCTA 1063
consensus_7495#1      ACTTAATAAATCTTGATTGTTTTATGAATCTTTATGATTTCTATTAAACTTCAAAATCTA 623
                      ***  ******* ****   ************ ****** *******      *******

consensus_7495#0      AAA---CCATAGANNTAATAATGATTTGCGGTCTGATCGATCATGTGACGA-TAAGGTTT 1119
consensus_7495#1      AAAAAACCATAAGATTAA-ATTAAAATA-GATTTTGCGGATCATGTATCGAATCAGTGTT 681
                      ***   *****    *** * * *  *  * * *    ********  *** * **  **

consensus_7495#0      GCTGATATGGATTTCATTNGNGTTGTAGGGACTGCATACAAANTTGCTCTACTACCTGAC 1179
consensus_7495#1      GTACGAATAAAGT--GTTTTTGCTGTATATTGTGATTTTTCATTTGGTGTATTGTTAGTG 739
                      *     **  * *   **   * ****     **  *    * *** * ** *    *  

consensus_7495#0      TATATGACTATTTATAA------------------------------------------- 1196
consensus_7495#1      TGAACTGTCGATAACAGAAGTTATGCATCTAAACATACACTGAGCTTATCAATGACTAAT 799
                      *  *       * * *                                            

consensus_7495#0      -----------------
consensus_7495#1      TTTGAATAAAATACAAC 816
                                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)