These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7495#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1196 fasta sequence [GAGCCATATTCGGCCGAGGTCTATGTGGTCATGTTGGTTGTGGTCGTTATGGTCAAAAACATGCACAGGTGCATTTTGAAGAAACAGGACATACATTCGCCTTAGAGCTCGGCAAAACATTGGTCTGGGATTACGCTGATGATGCATATGTTCATCGGCTAGCTGTTAATCACGAGGATGGAAAATTAGTCCAGCTTGGGCCCAGTAGTGAGACTGGTAACAAAAAGCTAGACATAATTAGCATGGAATTCAGTGCTATCTTAACAAGTCAACTGGAATCACAACGTGCATACTTTGAGTCCCAACTGGATTTAATAACTACTCAGTCAAATATGCGTCTCGAAGAAATGGAATCCAGTGTCGAATCGGCCTTATCCGCTGCGCAAACAGCCGAAAAGAAACTCTCTGAAGTCATAAAAGAGAACCTAGTCATCAGTCGTAAATTGCGACAAGCCACATCATTAGCTCAACGTTTACAAAGGGATTTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAATTACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGACAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAAATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAANAAGCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCTGTCATCTANCTTGTCAGTTACTCAATCATCGATAAAAAAAGNTGTATATGTATATATATATATATAGTTTGGCAAAAGTATTGTCTNTATTNTATAAAAGATATATCTAANTCTACTTTCTGGTGGTTATTCAAAATGCACGACCTTCTCTGATGTTTTGATCTTTGTTCAAACTATAAATCCTGATGTTTATGAATCTTATGATTCTATTAACTCAAATCTAAAACCATAGANNTAATAATGATTTGCGGTCTGATCGATCATGTGACGATAAGGTTTGCTGATATGGATTTCATTNGNGTTGTAGGGACTGCATACAAANTTGCTCTACTACCTGACTATATGACTATTTATAA] [+] EMBL CD081779 [GAGCCATATTCGGCCGAGGTCTATGTGGTCATGTTGGTTGTGGTCGTTATGGTCAAAAACATGCACAGGTGCATTTTGAAGAAACAGGACATACATTCGCCTTAGAGCTCGGCAAAACATTGGTCTGGGATTACGCTGATGATGCATATGTTCATCGGCTAGCTGTTAATCACGAGGATGGAAAATTAGTCCAGCTTGGGCCCAGTAGTGAGACTGGTAACAAAAAGCTAGACATAATTAGCATGGAATTCAGTGCTATCTTAACAAGTCAACTGGAATCACAACGTGCATACTTTGAGTCCCAACTGGATTTAATAACTACTCAGTCAAATATGCGTCTCGAAGAAATGGAATCCAGTGTCGAATCGGCCTTATCCGCTGCGCAAACAGCCGAAAAGAAACTCTCTGAAGTCATAAAAGAGAACCTAGTCATCAGTCGTAAATTGCGACAAGCCACATCATTAGCTCAACGTTTACAAAGGGATTTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAATTACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGACAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAAATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAANAAGCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCTGTCATCTANCTTGTCAGTTACTCAATCATCGATAAAAAAAGNTGTATATGTATATATATATATATAGTTTGGCAAAAGTATTGTCTNTATTNTATAAAAGATATATCTAANTCTACTTTCTGGTGGTTATTCAAAATGCACGACCTTCTCTGATGTTTTGATCTTTGTTCAAACTATAAATCCTGATGTTTATGAATCTTATGATTCTATTAACTCAAATCTAAAACCATAGANNTAATAATGATTTGCGGTCTGATCGATCATGTGACGATAAGGTTTGCTGATATGGATTTCATTNGNGTTGTAGGGACTGCATACAAANTTGCTCTACTACCTGACTATATGACTATTTATAA] [-] EMBL CD186534 [ TAGAGCTCGGCAAAACATTGGTCTGGGATTACGCTGATGATGCATATGTTCATCGGCTAGCTGTTAATCACGAGGATGGAAAATTAGTCCAGCTTGGGCCCAGTAGTGAGACTGGTAACAAAAAGCTAGACATAATTAGCATGGAATTCAGTGCTATCTTAACAAGTCAACTGGAATCACAACGTGCATACTTTGAGTCCCAACTGGATTTAATAACTACTCAGTCAAATATGCGTCTCGAAGAAATGGAATCCAGTGTCGAATCGGCCTTATCCGCTGCGCAAACAGCCGAAAAGAAACTCTCTGAAGTCATAAAAGAGAACCTAGTCATCAGTCGTAAATTGCGACAAGCCACATCATTAGCTCAACGTTTACAAAGGGATTTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAAC ] [-] EMBL CD187304 [ ACGTGCATACTTTGAGTCCCAACTGGATTTAATAACTACTCAGTCATATATGCGTCTCGAAGAAATGGAATCCAGTGTCGAATCGGCCTTATCCGCTGCGCAAACAGCCGAAAAGAAACCCTCTGAAGTCATAGAAGAGAACCTAGTCATCAGTCGTAAATTGCGACAAGCCACATCATTAGCTCAACGTTTACAAAGGGATTTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAATTACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGACAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCAGGCAGTTCACAAAAAATAAATCGAAGACGACGTAAACGCTAAAA ] consensusID : consensus_7495#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 816 fasta sequence [CCACATCATAGCTCAACGTTT-CAAAGGGA-TTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAATTACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGACAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAAATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAAAAAGCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCTGTCATCTACTTGTCAGTTTACTCAATCATCGATAAAAAAAAGTTGTATATG--TATATATATATATATAGTTTGTCAAAAGTATTGTCTTTATTTTATTAAAGATTATATCTAATTCTACTTTCTGTTGTTTTATTCAAAATTGCACGACCTTTCTCTGCATGTATTTGATCTTTGTTTCAACTTAATAAATCTTGATTGTTTTATGAATCTTTATGATTTCTATTAAACTTCAAAATCTAAAAAAACCATAAGATTAAATTAAAATAGATTTTGCGGATCATGTATCGAATCAGTGTTGTACGAATAAAGTGTTTTTGCTGTATATTGTGATTTTTCATTTGGTGTATTGTTAGTGTGAACTGTCGATAACAGAAGTTATGCATCTAAACATACACTGAGCTTATCAATGACTAATTTTGAATAAAATACAAC] [-] EMBL CD075510 [CCACATCATAGCTCAACGTTT CAAAGGGA TTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAATTACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGACAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAAATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAAAAAGCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCTGTCATCTACTTGTCAGTTTACTCAATCATCGATAAAAAAAAGTTGTATATG TATATATATATATATAGTTTGTCAAAAGTATTGTCTTTATTTTATTAAAGATTATATCTAATTCTACTTTCTGTTGTTTTATTCAAAATTGCACGACCTTTCTCTGCATGTATTTGATCTTTGTTTCAACTTAATAAATCTTGATTGTTTTATGAATCTTTATGATTTCTATTAAACTTCAAAATCTAAAAAAACCATAAGATTAAATTAAAATAGATTTTGCGGATCATGTATCGAATCAGTGTTGTACGAATAAAGTGTTTTTGCTGTATATTGTGATTTTTCATTTGGTGTATTGTTAGTGTGAACTGTCGATAACAGAAGTTATGCATCTAAACATACACTGAGCTTATCAATGACTAATTTTGAATAAAATACAAC] [-] EMBL CD076951 [ catTAGCTCAACGTTTACAAAGGGATTTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAATTACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGACAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAAATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAAAAAGCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCTGTCATCTACTTGTCAGTTTACTCAATCATCGATAAAAAAAAGTTGTATATGTATATATATATATATATAGTTTGTCAAAAGTATTGTCTTTATTTTATTAAAGATTATATCTAATTCTACTTTCTGTTGTTTTATTCAAAATTGCACGACCTTTCTCTGCATGTATTTGATCTTTGTTTCAACTTAATAAATCTTGATTGTTTTATGAATCTTTATGATTTCTATTAAACTTCAAAATCTAAAAAAACCATAAGATTAAATTAAAATAGATTTTGCGGATCATGTATCGAATCAGTGTTGTACGAATAAAGTGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7495#0 GAGCCATATTCGGCCGAGGTCTATGTGGTCATGTTGGTTGTGGTCGTTATGGTCAAAAAC 60 consensus_7495#1 ------------------------------------------------------------ consensus_7495#0 ATGCACAGGTGCATTTTGAAGAAACAGGACATACATTCGCCTTAGAGCTCGGCAAAACAT 120 consensus_7495#1 ------------------------------------------------------------ consensus_7495#0 TGGTCTGGGATTACGCTGATGATGCATATGTTCATCGGCTAGCTGTTAATCACGAGGATG 180 consensus_7495#1 ------------------------------------------------------------ consensus_7495#0 GAAAATTAGTCCAGCTTGGGCCCAGTAGTGAGACTGGTAACAAAAAGCTAGACATAATTA 240 consensus_7495#1 ------------------------------------------------------------ consensus_7495#0 GCATGGAATTCAGTGCTATCTTAACAAGTCAACTGGAATCACAACGTGCATACTTTGAGT 300 consensus_7495#1 ------------------------------------------------------------ consensus_7495#0 CCCAACTGGATTTAATAACTACTCAGTCAAATATGCGTCTCGAAGAAATGGAATCCAGTG 360 consensus_7495#1 ------------------------------------------------------------ consensus_7495#0 TCGAATCGGCCTTATCCGCTGCGCAAACAGCCGAAAAGAAACTCTCTGAAGTCATAAAAG 420 consensus_7495#1 ------------------------------------------------------------ consensus_7495#0 AGAACCTAGTCATCAGTCGTAAATTGCGACAAGCCACATCATTAGCTCAACGTTTACAAA 480 consensus_7495#1 ---------------------------------CCACATCAT-AGCTCAACGTTT-CAAA 25 ********* ************ **** consensus_7495#0 GGGATTTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGC 540 consensus_7495#1 GGGATT-GGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGC 84 ****** ***************************************************** consensus_7495#0 GCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAAT 600 consensus_7495#1 GCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAAT 144 ************************************************************ consensus_7495#0 TACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGA 660 consensus_7495#1 TACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGA 204 ************************************************************ consensus_7495#0 CAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAA 720 consensus_7495#1 CAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAA 264 ************************************************************ consensus_7495#0 ATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAANAA 780 consensus_7495#1 ATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAAAAA 324 ********************************************************* ** consensus_7495#0 GCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCT 840 consensus_7495#1 GCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCT 384 ************************************************************ consensus_7495#0 GTCATCTANCTTGTCAGTT-ACTCAATCATCGATAAAAAAA-GNTGTATATGTATATATA 898 consensus_7495#1 GTCATCTAC-TTGTCAGTTTACTCAATCATCGATAAAAAAAAGTTGTATATGTATATATA 443 ******** ********* ********************* * **************** consensus_7495#0 TATATATAGTTTGGCAAAAGTATTGTCTNTATTNTATAAAAGAT-ATATCTAANTCTACT 957 consensus_7495#1 TATATATAGTTTGTCAAAAGTATTGTCTTTATTTTATTAAAGATTATATCTAATTCTACT 503 ************* ************** **** *** ****** ******** ****** consensus_7495#0 TTCTGGTGGTT-ATTCAAAAT-GCACGACCTT-CTCTG-ATGT-TTTGATCTTTGTTCAA 1012 consensus_7495#1 TTCTGTTGTTTTATTCAAAATTGCACGACCTTTCTCTGCATGTATTTGATCTTTGTTTCA 563 ***** ** ** ********* ********** ***** **** ************* * consensus_7495#0 ACT--ATAAATCCTGATG--TTTATGAATCTT-ATGATT-CTATTAACTC---AAATCTA 1063 consensus_7495#1 ACTTAATAAATCTTGATTGTTTTATGAATCTTTATGATTTCTATTAAACTTCAAAATCTA 623 *** ******* **** ************ ****** ******* ******* consensus_7495#0 AAA---CCATAGANNTAATAATGATTTGCGGTCTGATCGATCATGTGACGA-TAAGGTTT 1119 consensus_7495#1 AAAAAACCATAAGATTAA-ATTAAAATA-GATTTTGCGGATCATGTATCGAATCAGTGTT 681 *** ***** *** * * * * * * * ******** *** * ** ** consensus_7495#0 GCTGATATGGATTTCATTNGNGTTGTAGGGACTGCATACAAANTTGCTCTACTACCTGAC 1179 consensus_7495#1 GTACGAATAAAGT--GTTTTTGCTGTATATTGTGATTTTTCATTTGGTGTATTGTTAGTG 739 * ** * * ** * **** ** * * *** * ** * * consensus_7495#0 TATATGACTATTTATAA------------------------------------------- 1196 consensus_7495#1 TGAACTGTCGATAACAGAAGTTATGCATCTAAACATACACTGAGCTTATCAATGACTAAT 799 * * * * * consensus_7495#0 ----------------- consensus_7495#1 TTTGAATAAAATACAAC 816 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||