These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7496#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 737 fasta sequence [CAGAGAAAGAAGATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTACCTACTATATTTGAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACCAAAAAAAGAAAACTACATGATCACATTATAGCGCGTCGTGCAGCTCGTATTGAGAGTATCTCATCTGAAAATTCCTCTCTTGAATCAATGAAGAAGGTTTGTGTCAATGCGATGAAACGATACCTTCAAACTCGTCCGAATGCATCTTGGGAATCTATTCGACGTGCAAAAGATCTAAGAGATGCACACTTTTCATTGCCTGTTCATCAGATTTTTGATAATTCAGCAGAGAAAGAAGATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTACCTACTATATTTGAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACCAAAAAAAGAAAACTACATGATCACATTATAGCGCGTCGTGCAGCTCAGCGAGCGGTCGGTCAAACCAACAATGTACTGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCAATTAGGTGCATGTAATGCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGTGGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACANAAAGTCAATTTTGTTTAGATGCAGCAGCAGCTTCATTA] [-] EMBL CD131437 [CAGAGAAAGAAGATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTACCTACTATATTTGAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACCAAAAAAAGAAAACTACATGATCACATTATAGCGCGTCGTGCAGCTCGTATTGAGAGTATCTCATCTGAAAATTCCTCTCTTGAATCAATGAAGAAGGTTTGTGTCAATGCGATGAAACGATACCTTCAAACTCGTCCGAATGCATCTTGGGAATCTATTCGACGTGCAAAAGATCTAAGAGATGCACACTTTTCATTGCCTGTTCATCAGATTTTTGATAATTCAGCAGAGAAAGAAGATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTACCTACTATATTTGAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCT ] [+] EMBL CD191860 [ ATTCTTCTCTTGAATCAATGAAGAAGGTTTGTGTCAATGCGATGAAACGATACCTTCAAACTCGTCCGAATGCATCTTGGGAATCTATTCGACGTGCAAAAGATCTAAGAGATGCACACTTTTCATTGCCTGATCATCAGATTTTTGATAATTCAGCAGAGAAAGAAGATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTACCTACTATATTTGAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACCAAAAAAAGAAAACTACATGATCACATTATAGCGCGTCGTGCAGCTCAGCGAGCGGTCGGTCAAACCAACAATGTACTGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCAATTAGGTGCATGTAATGCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGTGGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACANAAAGTCAATTTTGTTTAGATGCAGCAGCAGCTTCATTA] consensusID : consensus_7496#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 658 fasta sequence [CTTTTTTTGGTCATTGTAGCAAAAGCTTCGGGATTCACATTATAGCGCGTCGTGCAGCTCAGCGAGCGGTCGGTCAAACCAACAATGTACNTGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCAATTAGGTGCATGTAATGCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGTGGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACAAAAAGTCAATTTTGTTTAGATGCAGCAGCAGCTTCATTAGATTTACCAAATGATGAATCACAACAAGTCCATGGTGGAGTTGCAGGATCACATAGTCGAAAGCTTGTTTGGGATCGTAAACGCAAACGATTTACTGGAATGGATGCTGCCCAAGGTAAAGCAAATATGAAACGTATTAAAACTGAAAGTGGTGTATGGATTCCTGCATCATACAAAACAGACAAATATAAACTGTGGCTTAAAAAATCCAAGTCGGACATTATACAGGAAAC-AAGCAAATCGGCAGAAGAATCATCCTCTGTTATCGATGCTTCAAATATGCATAAAAAATTTGCAAATTATGGGTGATGTGATAGAATTACCTGATACAAATGAAGTGACCGGCAAACAAAATCATTTTTTAAAATCA] [+] EMBL CD131962 [CTTTTTTTGGTCATTGTAGCAAAAGCTTCGGGATTCACATTATAGCGCGTCGTGCAGCTCAGCGAGCGGTCGGTCAAACCAACAATGTACNTGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCAATTAGGTGCATGTAATGCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGTGGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACAAAAAGTCAATTTTG TTAGATGCAGCAGCAGCTTCATTAGATTTACCAAATGATGAATCACAACAAGTCCATGGTGGAGTTGCAGGATCACATAGTCGAAAGCTTGTTTGGGATCGTAAACGCAAACGATTTACTGGAATGGATGCTGCCCAAGGTAAAGCAAATATGAAACGTATTAAAACTGAAAGTGGTGTATGGATTCCTGCATCATACAAAACAGACAAATATAAACTGTGGCTTAAAAAATCCAAGTCGGACATTATACAGGAAAC AAGCAAATCGGCAGAAGAATCATCCTCTGTTATCGATGCTTCAAATATGCATAAAAAATTTGCAAATTATGGGTGATGTGATAGAATTACCTGATACAAATGAAGTGACCGGCAAACAAAATCATTTTTTAAAATCA] [+] EMBL CD185472 [ AGCAAAAGCTACATGA TCACATTATAGCGCGTCGTGCAGCTCAGCGAGCGGTCGGTCAAACCAACAATGTAC TGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCAATTAGGTGCATGTAATGCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGTGGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACAAAAAGTCAATTTTGTTTAGATGCAGCAGCAGCTTCATTAGATTTACCAAATGATGAATCACAACAAGTCCATGGTGGAGTTGCAGGATCACATAGTCGAAAGCTTGTTTGGGATCGTAAACGCAAACGATTTACTGGAATGGATGCTGCTCAAGGTAAAGCAA ATGAAACGTACTAAAACTGAAAGTGGTGTATGGATTCCTGCATCATACAAAACAGACAAATATAAACTGTGGCTTANAAAATCCAAGTCGGATATTATACAGGAAACAAAGC AATCGGCAGAAGAATCATCCTCTGTTATCGATGCT ] [+] EMBL CD165244 [ TGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCGATTAGGTGCATGTAATGCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGTGGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACAAAAAGTCAATTTTGTTTAGATGCAGCAGCAGCTTCATTAGATTTACCAAATGATGAATCACAACAAGTCCATGGTGGAGTTGCAGGATCACATAGTCGAAAGCTTGTTTGGGATCGTANACGCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7496#0 -CAGAGAAAGAAGATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTA 59 consensus_7496#1 CTTTTTTTGGTCATTGTAGCAAAAGCTTCGGGATTCA-CATTATA--GCGCGTCGTGCAG 57 * **** **** * *** ***** * ** consensus_7496#0 CCTACTATATTTGAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACC 119 consensus_7496#1 CTCAGCG-AGCGGTCGGTCAAACCAACAATGTA---CNTGAAAAATTTAGTAGAA----- 108 * * * * * * ** **** * **** *** ** ** consensus_7496#0 AAAAAAAGAAAACTACATGATCACATTATAGCGCGTCGTGCAGCTCGTATTGAGAGTATC 179 consensus_7496#1 AGAAAGGTCTCATTAACTGATCA-ATTA-GGTGCAT-GTAATGCTAATGATGA-AATGTC 164 * *** * ** ****** **** * ** * ** *** * *** * * ** consensus_7496#0 ---TCATCTGAAAATTCCTCTCTTGAATCAATGAAGAAGGTTTGTGTCAATGCGATGAAA 236 consensus_7496#1 GGATAATTTGGAAAATATTGACTT----CTTTGTACCATATTCACGTG---GTGATGAAG 217 * ** ** *** * * *** * ** * * ** ** * ****** consensus_7496#0 CGATACCTTCAAACTCGTCCGAATGCATCTTGGGAATCTATTCGACGTGCAAAAGATCTA 296 consensus_7496#1 CAACAG----AGAATGGATTGTCAATTACTGGAACAAAAAGTCAATTTTGTTTAGATGCA 273 * * * * * * * * ** * * * ** * * **** * consensus_7496#0 AGAGATGCACACTTTTCATTGCCTGTTCATCAGATTTTTGATAATTCAGCAGAGAAAGAA 356 consensus_7496#1 GCAGCAGCTTCATTAGATTTACCAAATGAT--GAATCACAACAAGTCCATGGTGGA-GTT 330 ** ** ** ** ** * ** ** * * ** ** * * * * consensus_7496#0 GATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTACCTACTATATTT 416 consensus_7496#1 GCAGGATCACATAGTCGAAAGCTTGTTTGGGATCGTAAACGCAAACGATTTACTGGAATG 390 * * * ** *** * ** * * * ** *** **** * **** * * consensus_7496#0 GAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACCAAAAAAAGAAAA 476 consensus_7496#1 GATGCTGCCCAAGGTAAAGCAAATA-TGAAACG-----TATTAAAACTGAAAGTGGTGTA 444 ** *** * * *** **** * ** * ** *** * * consensus_7496#0 CTACATGATCACATTATAGCGCGTCGTGCAGCTCAGCGAGCGGTCGGTCAAACCAACAAT 536 consensus_7496#1 -TGGATTCCTGCATCATA-CAAAACAGACAAAT--ATAAACTGTGGCTTAAAAAATCCAA 500 * ** *** *** * * ** * * * ** * * *** * * * consensus_7496#0 GTACTGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCAATTAGGTGCATGTAAT 596 consensus_7496#1 GT--CGGACATTATACAGGAAACAAGCAAATCGGCAGAAGAATCATCCTCTGTTATCGAT 558 ** * * * * ** **** ** ** * ** ** ** ** consensus_7496#0 GCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGT 656 consensus_7496#1 GCTTCAAAT-ATGCAT-AAAAAATTTGCAAATTATGGGTGATGTGATAGAATTACCTGAT 616 *** ** * * * ****** *** *** * * ** ** * * consensus_7496#0 GGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACANAAAGTCAATTTTGTTTA 716 consensus_7496#1 ACAAATGAAGTGACCGGCAA-ACAAAATCATTTTTTAAAATCA----------------- 658 ****** ** * ** * *** ** * ** consensus_7496#0 GATGCAGCAGCAGCTTCATTA 737 consensus_7496#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||