Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7496 cluster # 7496       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7496#0 length = 737 sequences # 2  
consensus_7496#1 length = 658 sequences # 3  

consensusID : consensus_7496#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 737
fasta sequence
                              [CAGAGAAAGAAGATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTACCTACTATATTTGAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACCAAAAAAAGAAAACTACATGATCACATTATAGCGCGTCGTGCAGCTCGTATTGAGAGTATCTCATCTGAAAATTCCTCTCTTGAATCAATGAAGAAGGTTTGTGTCAATGCGATGAAACGATACCTTCAAACTCGTCCGAATGCATCTTGGGAATCTATTCGACGTGCAAAAGATCTAAGAGATGCACACTTTTCATTGCCTGTTCATCAGATTTTTGATAATTCAGCAGAGAAAGAAGATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTACCTACTATATTTGAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACCAAAAAAAGAAAACTACATGATCACATTATAGCGCGTCGTGCAGCTCAGCGAGCGGTCGGTCAAACCAACAATGTACTGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCAATTAGGTGCATGTAATGCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGTGGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACANAAAGTCAATTTTGTTTAGATGCAGCAGCAGCTTCATTA]

[-] EMBL CD131437             [CAGAGAAAGAAGATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTACCTACTATATTTGAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACCAAAAAAAGAAAACTACATGATCACATTATAGCGCGTCGTGCAGCTCGTATTGAGAGTATCTCATCTGAAAATTCCTCTCTTGAATCAATGAAGAAGGTTTGTGTCAATGCGATGAAACGATACCTTCAAACTCGTCCGAATGCATCTTGGGAATCTATTCGACGTGCAAAAGATCTAAGAGATGCACACTTTTCATTGCCTGTTCATCAGATTTTTGATAATTCAGCAGAGAAAGAAGATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTACCTACTATATTTGAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCT                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD191860             [                                                                                                                                                                                             ATTCTTCTCTTGAATCAATGAAGAAGGTTTGTGTCAATGCGATGAAACGATACCTTCAAACTCGTCCGAATGCATCTTGGGAATCTATTCGACGTGCAAAAGATCTAAGAGATGCACACTTTTCATTGCCTGATCATCAGATTTTTGATAATTCAGCAGAGAAAGAAGATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTACCTACTATATTTGAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACCAAAAAAAGAAAACTACATGATCACATTATAGCGCGTCGTGCAGCTCAGCGAGCGGTCGGTCAAACCAACAATGTACTGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCAATTAGGTGCATGTAATGCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGTGGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACANAAAGTCAATTTTGTTTAGATGCAGCAGCAGCTTCATTA]


>consensus_7496#0 CAGAGAAAGAAGATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTAC CTACTATATTTGAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACCA AAAAAAGAAAACTACATGATCACATTATAGCGCGTCGTGCAGCTCGTATTGAGAGTATCT CATCTGAAAATTCCTCTCTTGAATCAATGAAGAAGGTTTGTGTCAATGCGATGAAACGAT ACCTTCAAACTCGTCCGAATGCATCTTGGGAATCTATTCGACGTGCAAAAGATCTAAGAG ATGCACACTTTTCATTGCCTGTTCATCAGATTTTTGATAATTCAGCAGAGAAAGAAGATG TAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTACCTACTATATTTGAAG CTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACCAAAAAAAGAAAACTAC ATGATCACATTATAGCGCGTCGTGCAGCTCAGCGAGCGGTCGGTCAAACCAACAATGTAC TGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCAATTAGGTGCATGTAATGCTA ATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGTGGTG ATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACANAAAGTCAATTTTGTTTAGATG CAGCAGCAGCTTCATTA



consensusID : consensus_7496#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 658
fasta sequence
                              [CTTTTTTTGGTCATTGTAGCAAAAGCTTCGGGATTCACATTATAGCGCGTCGTGCAGCTCAGCGAGCGGTCGGTCAAACCAACAATGTACNTGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCAATTAGGTGCATGTAATGCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGTGGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACAAAAAGTCAATTTTGTTTAGATGCAGCAGCAGCTTCATTAGATTTACCAAATGATGAATCACAACAAGTCCATGGTGGAGTTGCAGGATCACATAGTCGAAAGCTTGTTTGGGATCGTAAACGCAAACGATTTACTGGAATGGATGCTGCCCAAGGTAAAGCAAATATGAAACGTATTAAAACTGAAAGTGGTGTATGGATTCCTGCATCATACAAAACAGACAAATATAAACTGTGGCTTAAAAAATCCAAGTCGGACATTATACAGGAAAC-AAGCAAATCGGCAGAAGAATCATCCTCTGTTATCGATGCTTCAAATATGCATAAAAAATTTGCAAATTATGGGTGATGTGATAGAATTACCTGATACAAATGAAGTGACCGGCAAACAAAATCATTTTTTAAAATCA]

[+] EMBL CD131962             [CTTTTTTTGGTCATTGTAGCAAAAGCTTCGGGATTCACATTATAGCGCGTCGTGCAGCTCAGCGAGCGGTCGGTCAAACCAACAATGTACNTGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCAATTAGGTGCATGTAATGCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGTGGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACAAAAAGTCAATTTTG TTAGATGCAGCAGCAGCTTCATTAGATTTACCAAATGATGAATCACAACAAGTCCATGGTGGAGTTGCAGGATCACATAGTCGAAAGCTTGTTTGGGATCGTAAACGCAAACGATTTACTGGAATGGATGCTGCCCAAGGTAAAGCAAATATGAAACGTATTAAAACTGAAAGTGGTGTATGGATTCCTGCATCATACAAAACAGACAAATATAAACTGTGGCTTAAAAAATCCAAGTCGGACATTATACAGGAAAC AAGCAAATCGGCAGAAGAATCATCCTCTGTTATCGATGCTTCAAATATGCATAAAAAATTTGCAAATTATGGGTGATGTGATAGAATTACCTGATACAAATGAAGTGACCGGCAAACAAAATCATTTTTTAAAATCA]
[+] EMBL CD185472             [                 AGCAAAAGCTACATGA TCACATTATAGCGCGTCGTGCAGCTCAGCGAGCGGTCGGTCAAACCAACAATGTAC TGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCAATTAGGTGCATGTAATGCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGTGGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACAAAAAGTCAATTTTGTTTAGATGCAGCAGCAGCTTCATTAGATTTACCAAATGATGAATCACAACAAGTCCATGGTGGAGTTGCAGGATCACATAGTCGAAAGCTTGTTTGGGATCGTAAACGCAAACGATTTACTGGAATGGATGCTGCTCAAGGTAAAGCAA  ATGAAACGTACTAAAACTGAAAGTGGTGTATGGATTCCTGCATCATACAAAACAGACAAATATAAACTGTGGCTTANAAAATCCAAGTCGGATATTATACAGGAAACAAAGC AATCGGCAGAAGAATCATCCTCTGTTATCGATGCT                                                                                                 ]
[+] EMBL CD165244             [                                                                                           TGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCGATTAGGTGCATGTAATGCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGTGGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACAAAAAGTCAATTTTGTTTAGATGCAGCAGCAGCTTCATTAGATTTACCAAATGATGAATCACAACAAGTCCATGGTGGAGTTGCAGGATCACATAGTCGAAAGCTTGTTTGGGATCGTANACGCA                                                                                                                                                                                                                                                                                              ]


>consensus_7496#1 CTTTTTTTGGTCATTGTAGCAAAAGCTTCGGGATTCACATTATAGCGCGTCGTGCAGCTC AGCGAGCGGTCGGTCAAACCAACAATGTACNTGAAAAATTTAGTAGAAAGAAAGGTCTCA TTAACTGATCAATTAGGTGCATGTAATGCTAATGATGAAATGTCGGATAATTTGGAAAAT ATTGACTTCTTTGTACCATATTCACGTGGTGATGAAGCAACAGAGAATGGATTGTCAATT ACTGGAACAAAAAGTCAATTTTGTTTAGATGCAGCAGCAGCTTCATTAGATTTACCAAAT GATGAATCACAACAAGTCCATGGTGGAGTTGCAGGATCACATAGTCGAAAGCTTGTTTGG GATCGTAAACGCAAACGATTTACTGGAATGGATGCTGCCCAAGGTAAAGCAAATATGAAA CGTATTAAAACTGAAAGTGGTGTATGGATTCCTGCATCATACAAAACAGACAAATATAAA CTGTGGCTTAAAAAATCCAAGTCGGACATTATACAGGAAACAAGCAAATCGGCAGAAGAA TCATCCTCTGTTATCGATGCTTCAAATATGCATAAAAAATTTGCAAATTATGGGTGATGT GATAGAATTACCTGATACAAATGAAGTGACCGGCAAACAAAATCATTTTTTAAAATCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7496#0      -CAGAGAAAGAAGATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTA 59
consensus_7496#1      CTTTTTTTGGTCATTGTAGCAAAAGCTTCGGGATTCA-CATTATA--GCGCGTCGTGCAG 57
                               *    **** ****   *     ***     *****   *   **      

consensus_7496#0      CCTACTATATTTGAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACC 119
consensus_7496#1      CTCAGCG-AGCGGTCGGTCAAACCAACAATGTA---CNTGAAAAATTTAGTAGAA----- 108
                      *  *    *   *  * *      **  ****    * ****   ***  ** **     

consensus_7496#0      AAAAAAAGAAAACTACATGATCACATTATAGCGCGTCGTGCAGCTCGTATTGAGAGTATC 179
consensus_7496#1      AGAAAGGTCTCATTAACTGATCA-ATTA-GGTGCAT-GTAATGCTAATGATGA-AATGTC 164
                      * ***      * **  ****** ****  * ** * **   ***  *  *** * * **

consensus_7496#0      ---TCATCTGAAAATTCCTCTCTTGAATCAATGAAGAAGGTTTGTGTCAATGCGATGAAA 236
consensus_7496#1      GGATAATTTGGAAAATATTGACTT----CTTTGTACCATATTCACGTG---GTGATGAAG 217
                         * ** ** *** *  *  ***    *  ** *  *  **   **    * ****** 

consensus_7496#0      CGATACCTTCAAACTCGTCCGAATGCATCTTGGGAATCTATTCGACGTGCAAAAGATCTA 296
consensus_7496#1      CAACAG----AGAATGGATTGTCAATTACTGGAACAAAAAGTCAATTTTGTTTAGATGCA 273
                      * * *     * * * *   *       ** *   *   * ** *  *     ****  *

consensus_7496#0      AGAGATGCACACTTTTCATTGCCTGTTCATCAGATTTTTGATAATTCAGCAGAGAAAGAA 356
consensus_7496#1      GCAGCAGCTTCATTAGATTTACCAAATGAT--GAATCACAACAAGTCCATGGTGGA-GTT 330
                        **  **    **    ** **   * **  ** *    * ** **    * * * *  

consensus_7496#0      GATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTACCTACTATATTT 416
consensus_7496#1      GCAGGATCACATAGTCGAAAGCTTGTTTGGGATCGTAAACGCAAACGATTTACTGGAATG 390
                      *  * * ** *** *  **   * * *      **  *** ****  *  ****  * * 

consensus_7496#0      GAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACCAAAAAAAGAAAA 476
consensus_7496#1      GATGCTGCCCAAGGTAAAGCAAATA-TGAAACG-----TATTAAAACTGAAAGTGGTGTA 444
                      ** ***          * *  ***  **** *      **  *  **  ***   *   *

consensus_7496#0      CTACATGATCACATTATAGCGCGTCGTGCAGCTCAGCGAGCGGTCGGTCAAACCAACAAT 536
consensus_7496#1      -TGGATTCCTGCATCATA-CAAAACAGACAAAT--ATAAACTGTGGCTTAAAAAATCCAA 500
                       *  **     *** *** *    *   **  *     * * ** * * ***  * * * 

consensus_7496#0      GTACTGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCAATTAGGTGCATGTAAT 596
consensus_7496#1      GT--CGGACATTATACAGGAAACAAGCAAATCGGCAGAAGAATCATCCTCTGTTATCGAT 558
                      **   * * * * **   **** **     **   *   **   **    **      **

consensus_7496#0      GCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGT 656
consensus_7496#1      GCTTCAAAT-ATGCAT-AAAAAATTTGCAAATTATGGGTGATGTGATAGAATTACCTGAT 616
                      ***    ** *    *   * ****** *** *** *      *  **  **   *   *

consensus_7496#0      GGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACANAAAGTCAATTTTGTTTA 716
consensus_7496#1      ACAAATGAAGTGACCGGCAA-ACAAAATCATTTTTTAAAATCA----------------- 658
                          ******  ** *  **   *   *** **  *  **                    

consensus_7496#0      GATGCAGCAGCAGCTTCATTA 737
consensus_7496#1      ---------------------
                                           




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)