These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 580 fasta sequence [ATTTAACTACCCAAGGTCAATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGAATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATAGTTTACGCAAGTTCCGCACAAATTCTCGCCTAAATTTTTCAGTGTGAAGGTGTTAGTATGCAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTTGGGACGTATTACAAGAGGAGATGTTGTTATTGCTTGTCAACGCAGGAAGTATGATACTACGCATGTTCTAAAGCGTATCAAGGGTCTTGGCGATGACCGAGTTACTTTCTGGGACAAGAACCATAGGGAAATTATCGCTAAGCAGGTACCTCGAGGTCATGTCTGGTTAGAAGGTGATAATACATTACAGTCATTAGACTCAAGGTCTTATGGCCCCGTCCCCGTTTCTCACTTAGAATACAAAGTATTTCTCCGTGTATGGCCGTTAAGTCACTTTGGACTCCTTCAAACACCAAAACCTGCTACTTGCACAACTGGTGAACCATACGACCCTGAATTTGTACAACGT] [+] EMBL CD163546 [ATTTAACTACCCAAGGTCAATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGAATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATAGTTTACGCAAGTTCCGCACAAATTCTCGCCTAAATTTTTCAGTGTGAAGGTGTTAGTATGCAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTTGGGACGTATTACAAGAGGAGATGTTGTTATTGCTTGTCAACGCAGGAAGTATGATACTACGCACGTTCTAAAGCGTATCAAGGGTCTTGGCGATGACCGAGTTACTTTCTGGGACAAGAACCATAGGGAAATTATCGCTAAGCAGGTACCTCGAGGTCATGTCTGGTTAGAAGGTGATAATACA ] [-] EMBL CD131843 [ AATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGAATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATAGTTTACGCAAGTTCCGCACAAATTCTCGCCTAAATTTTTCAGTGTGAAGGTGTTAGTATGCAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTTGGGACGTATTACAAGAGGAGATGTTGTTATTGCTTGTCAACGCAGGAAGTATGATACTACGCATGTTCTAAAGCGTATCAAGGGTCTTGGCGATGACCGAGTTACTTTCTGGGACAAGAACCATAGGGAAA TATCGCT ] [-] EMBL CD200304 [ ttCCCACTATAAAGGAGGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTTGGGACGTATTACAAGAGGAGATGTTGTTATTGCTTGTCAACGCAGGAAGTATGATACTACGCATGTTCTAAAGCGTATCAAGGGTCTTGGCGATGACCGAGTTACTTTCTGGGACGAGAACCATAGGGAAATTATCGCTAAGCAGGTACCTCGAGGTCATGTTTGGTTAGAAGGTGATAATACATTACAGTCATTAGACTCAAGGTCTTATGGCCCCGTCCCCGTTTCTCACTTAGAATACAAAGTATTTCTCCGTGTATGGCCGTTAAGTCACTTTGGACTCCTTCAAACACCAAAACCTGCTACTTGCACAACTGGTGAACCATACGACCCTGAATTTGTACAACGT] consensusID : consensus_7498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [CCGAAATTTAACTACTCAAGGTCAATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGAATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATAGTTTACTGTGAAGGTGTTAGTATGCAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTTGGGACGTATTACAAGGTACCTCGAGGTCATGTTTGGTTAGAAGGTGATAATACATTACAGTCATTAGACTCAAGGTCTTATGGCCCCG] [+] EMBL CD133295 [CCGAAATTTAACTACTCAAGGTCAATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGAATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATAGTTTACTGTGAAGGTGTTAGTATGCAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTTGGGACGTATTACAAGGTACCTCGAGGTCATGTTTGGTTAGAAGGTGATAATACATTACAGTCATTAGACTCAAGGTCTTATGGCCCCG] consensusID : consensus_7498#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 222 fasta sequence [CGGCACGAGGATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGAATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATAGTTTACGCAAGTTCCGCACAAATTCTCGCCTAAATTTTTCAGTGTGAAGGTGTTAGTATGCAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTT] [+] EMBL CD077553 [CGGCACGAGGATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGAATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATAGTTTACGCAAGTTCCGCACAAATTCTCGCCTAAATTTTTCAGTGTGAAGGTGTTAGTATGCAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7498#0 -----ATTTAACTACCCAAGGTCAATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGA 55 consensus_7498#2 -----------CGGCACGAGG---ATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGA 46 consensus_7498#1 CCGAAATTTAACTACTCAAGGTCAATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGA 60 * * * *** ************************************ consensus_7498#0 ATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATA 115 consensus_7498#2 ATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATA 106 consensus_7498#1 ATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATA 120 ************************************************************ consensus_7498#0 GTTTACGCAAGTTCCGCACAAATTCTCGCCTAAATTTTTCAGTGTGAAGGTGTTAGTATG 175 consensus_7498#2 GTTTACGCAAGTTCCGCACAAATTCTCGCCTAAATTTTTCAGTGTGAAGGTGTTAGTATG 166 consensus_7498#1 GTTTAC------------------------------------TGTGAAGGTGTTAGTATG 144 ****** ****************** consensus_7498#0 CAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTTGGGA 235 consensus_7498#2 CAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTT---- 222 consensus_7498#1 CAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTTGGGA 204 ******************************************************** consensus_7498#0 CGTATTACAAGAGGAGATGTTGTTATTGCTTGTCAACGCAGGAAGTATGATACTACGCAT 295 consensus_7498#2 ------------------------------------------------------------ consensus_7498#1 CGTATTACAAGGTACCTCGAGGTCATGTTTGGTTA--GAAGGTGATAATACATTACAGTC 262 consensus_7498#0 GTTCTAAAGCGTATCAAGGGTCTTGGCGATGACCGAGTTACTTTCTGGGACAAGAACCAT 355 consensus_7498#2 ------------------------------------------------------------ consensus_7498#1 ATTAGACTCAAGGTCTTATGGCCCCG---------------------------------- 288 consensus_7498#0 AGGGAAATTATCGCTAAGCAGGTACCTCGAGGTCATGTCTGGTTAGAAGGTGATAATACA 415 consensus_7498#2 ------------------------------------------------------------ consensus_7498#1 ------------------------------------------------------------ consensus_7498#0 TTACAGTCATTAGACTCAAGGTCTTATGGCCCCGTCCCCGTTTCTCACTTAGAATACAAA 475 consensus_7498#2 ------------------------------------------------------------ consensus_7498#1 ------------------------------------------------------------ consensus_7498#0 GTATTTCTCCGTGTATGGCCGTTAAGTCACTTTGGACTCCTTCAAACACCAAAACCTGCT 535 consensus_7498#2 ------------------------------------------------------------ consensus_7498#1 ------------------------------------------------------------ consensus_7498#0 ACTTGCACAACTGGTGAACCATACGACCCTGAATTTGTACAACGT 580 consensus_7498#2 --------------------------------------------- consensus_7498#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||