These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 603 fasta sequence [CATCAAACTTGGAGGAAAGTTTTAAACATGAATGTGATTCCGATAAAGCTCCTGGTGTTGACGATCTCGTTACAGATAGAGGTAATAACAATATTGGTGTGGTTTTTATCAGGACAAATCGGAACCCTATCTGACAAAATTCTTCAAAGGGTCGATTCCTTACGTTATTCTAATATGTTGAGATTACAAATGAAACTCACCCATGAAAAACATACATCTCAAGTTTTCTCCCACCTACTCTACATGGTTTATTTGTCGTTATCTACAAATCTGAAAGTAGGCATATATCTGAAGACGTGTTTCTTCGATTAATTGTATTGTGTGGCGTATTTAACGGTACAGCTTTACTGTTACCTCTGTTGAGATTTCAAAAAAGTAAGATATTTCCATTTAGTGGACGGAATTTTCATTTTCGACCTCTCATCTTACTAAAGATTTACTGTGTACACCTTCTTTGACCACGTTTTTGTGGAAAACGTCCTTAGATTTGATTTTATTAGTCACCATAGTCGCTGACAAATGGAGCCATTCTTAAAGGATCAAAAATTATTCACGTCTCATTTAATACACATTATTTTTGCTTCAGTAGTATCAAATCGTCTC] [+] EMBL CD165669 [CATCAAACTTGGAGGAAAGTTTTAAACATGAATGTGATTCCGATAAAGCTCCTGGTGTTGACGATCTCGTTACAGATAGAGGTAATAACAATATTGGTGTGGTTTTTATCAGGACAAATCGGAACCCTATCTGACAAAATTCT ] [+] EMBL CD182352 [ TCAAACTTGGAGGAAAGTTTTAAACATGAATGTGACTCCGATAAAGCTCCTGGTGTTGACGATCTCGATACAGATAGAGGTAATAACAATATTGGTGTGGTTTTTATCAGGACAAATCGGAACCCTATCTGACAAAATTCTTCAAAGGGTCGATTCCTTACGTTATTCTAATATGTTGAGATTACAAATGAAACTCACCCATGAAAAACATACATCTCAAGTTTTCTCCCACCTACTCTACATGGTTTATTTGTCGTTATCTACAAATCTGAAAGTAGGCATATATCTG ] [-] EMBL CD154277 [ GTGATCCCGATAAAGCTCCTGGTGTTGACGATCTCGTTACAGATAGAGGTAATAACAATATTGGTGTGGTTTTTATCAGGACAAATCGGAACCCTATCTGACAAAATTCTTCAAAGGGTCGATTCCTTACGTTATTCTAATATGTTGAGATTACAAATGAAACTCACCCATGAAAAACATACATCTCAAGTTTTCTCCCACCTACTCTACATGGTTTATTTGTCGTTATCTACAAATCTGAAAGTAGGCATATATCTGAAGACGTGTTTCTTCGATTAATTGTATTGTGTGGCGTATTTAACGGTACAGCTTTACTGTTACCTCTGTTGAGATTTCAAAAAAGTAAGATATTTCCATTTAGTGGACGGAATTTTCATTTTCGACCTCTCATCTTACTAAAGATTTACTGTGTACACCTTCTTTGACCACGTTTTTGTGGAAAACGTCCTTAGATTTGATTTTATTAGTCACCATAGTCGCTGACAAATGGAGCCATTCTTAAAGGATCAAAAATTATTCACGTCTCATTTAATACACATTATTTTTGCTTCAGTAGTATCAAATCGTCTC] consensusID : consensus_7506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 572 fasta sequence [GATGTGTTACCATAAGTTTCGACGCGTTTGAAAATTGAAGTGAAATGGAGATATCTATATTTGATCCTTGTTCTGGAATTAATTTTAAGACCGAAGAACCAGTTGAGTTAGATGACCCAGTTATGAAGTCATCACAGAAATCGGTCTCAAAAGATGTAAATGTTGTTCCTGAAAAAGATATAAAAGGTAGGCAACCACCATTATTATCATTATATTTGTGAAATTCGTATTTGCCCATCGACACTCGTCACTGGAAACTGACATTGGAAGACCGTAATTTTGGTAACCCTGCTGATGTTAACTTGGATGAGTTGGGAATTATACGAGACAATCAGTCATCAAACTTGGAGGAAAGTTTTAAACATGAATGTGATTCCGATAAAGCTCCTGGTGTTGACGATCTCGTTACAGATAGAGCTTCAAATGATCTACGATTACAAGTGTAAATATGATCCAATTTTTTGGTTGACTCTGCGCGTCAGTTTTTCACTAGAACTTCAAGAACTCAATCTCTCATAACTGCTCACTTAAAAGAAACTCTTCAAGTGTTCTGTATGTCATAATTGCTACAC] [+] EMBL BF936204 [GATGTGTTACCATAAGTTTCGACGCGTTTGAAAATTGAAGTGAAATGGAGATATCTATATTTGATCCTTGTTCTGGAATTAATTTTAAGACCGAAGAACCAGTTGAGTTAGATGACCCAGTTATGAAGTCATCACAGAAATCGGTCTCAAAAGATGTAAATGTTGTTCCTGAAAAAGATATAAAAGGTAGGCAACCACCATTATTATCATTATATTTGTGAAATTCGTATTTGCCCATCGACACTCGTCACTGGAAACTGACATTGGAAGACCGTAATTTTGGTAACCCTGCTGATGTTAACTTGGATGAGTTGGGAATTATACGAGACAATCAGTCATCAAACTTGGAGGAAAGTTTTAAACATGAATGTGATTCCGATAAAGCTCCTGGTGTTGACGATCTCGTTACAGATAGAGCTTCAAATGATCTACGATTACAAGTGTAAATATGATCCAATTTTTTGGTTGACTCTGCGCGTCAGTTTTTCACTAGAACTTCAAGAACTCAATCTCTCATAACTGCTCACTTAAAAGAAACTCTTCAAGTGTTCTGTATGTCATAATTGCTACAC] [+] EMBL AI976543 [GATGTGTTACCATAAGTTTCGACGCGTTTGAAAATTGAAGTGAAATGGAGATATCTATATTTGATCCTTGTTCTGGAATTAATTTTAAGACCGAAGAACCAGTTGAGTTAGATGACCCAGTTATGAAGTCATCACAGAAATCGGTCTCAAAAGATGTAAATGTTGTTCCTGAAAAAGATATAAAAGGTAGGCAACCACCATTATTATCATTATATTTGTGAAATTCGTATTTGCCCATCGACACTCGTCACTGGAAACTGACATTGGAAGACCGTAATTTTGGTAACCCTGCTGATGTTAACTTGGATGAGTTGGGAATTATACGAGACAATCAGTCATCAAACTTGGAGGAAAGTTTTAAACATGAATGTGATTCCGATAAAGCTCCTGGTGTTGACGATCTCGTTACAGATAGAGCTTCAAATGATCTACGATTACAAGTGTAAATATGATCCAATTTTTTGGTTGACTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7506#0 CATCAAACTTGGAGGAAAGTTTTAAACATGAATGTGATTCCGATAAAGCTCCTGGTGTTG 60 consensus_7506#1 ----GATGTGTTACCATAAGTTTCGACGCGTTTGAAAATTGAAGTGAAATGGAGATATCT 56 * * * * * *** ** * ** * * * * * * * * consensus_7506#0 ACGATCTCGTTACAGATAGAGGTAATAACAATATTGGTGTGGTTTTTATCAGGACAAATC 120 consensus_7506#1 ATA--TTTGATCCTTGTTCTGGAATTAATTTTAAGACCGAAGAACCAGTTGAGTTAGAT- 113 * * * * * * ** * *** ** * * * * * ** consensus_7506#0 GGAACCCTATCTGACAAAATTCTTCAAAGGGTCGATTCCTTACGTTATTCTAATATGTTG 180 consensus_7506#1 --GACCCAGTT--ATGAAGTCATCACAGAAATCGGTCTCAAAAGATGT----AAATGTTG 165 **** * * ** * * * *** * * * * * * * ****** consensus_7506#0 AGATTACAAATGAAACTCACCCATGAAAAACATACATCTCAAGTTTTCTCCCACCTACTC 240 consensus_7506#1 TTCCTGAAAAAGA--------TATAAAAGGTAGGCAAC-CACCATTATTATCATTATATT 216 * *** ** ** *** * ** * ** ** * ** * consensus_7506#0 TACATGGTTTATTTGTCGTTATCTACAAATCTGAAAGTAGGCATATATCTGAAGACGTGT 300 consensus_7506#1 TGTGAAATTCGTATTTGCCCATCGACACTCGTCACTGGAAACTGACATTGGAAGAC-CGT 275 * ** * * * *** *** * * * * * * ** ****** ** consensus_7506#0 TTCTTCGATTAATTGTATTGTGTGGCGTATTTAACGGTACAGCTTTACTGTTACCTCTGT 360 consensus_7506#1 AATTTTGGT-AACCCTGCTG-ATGTTAACTTGGATGAGTTGGGA--ATTATACGAGACAA 331 ** * * ** * ** ** ** * * * * * * consensus_7506#0 TGAGATTTCAAAAAAGTAAGATATTTCCATTTAGTGGACGGAATTTTCATTTTCGACCTC 420 consensus_7506#1 TCAGTCATCAAACTTGGAGGAAAGTTTTAAACA-TGAATGTGATTCCGAT-----AAAGC 385 * ** ***** * * ** * ** * * ** * * *** ** * * consensus_7506#0 TCATCTTACTAAAGATTT-ACTGTGTACACCTTCTTTGACCACGTTTTTGTGGAAAACGT 479 consensus_7506#1 TCCTGGTGTTGACGATCTCGTTACAGATAGAG-CTTCAAATGATCTACGATTACAAGTGT 444 ** * * * * *** * * * * *** * * * ** ** consensus_7506#0 CCTTA-GATTTGATTTTATTAGTCACCATAGTCGCTGACAAATGGAGCCATTCTTAAAGG 538 consensus_7506#1 AAATATGATCCAATTTTTTGGTTGACTCTGCGCGTCAGTTTTTCACTAGAACTTCAAGAA 504 ** *** ***** * * ** * ** * * * ** consensus_7506#0 ATCAAAAATTATTCACGTCTCATTTAATACACATTATTTTTGC-TTCAGTAGTATCA-AA 596 consensus_7506#1 CTCAATCTCTCATAACTGCTCACTTAAAAGAAACTCTTCAAGTGTTCTGTA-TGTCATAA 563 **** * * ** **** **** * * * * ** * *** *** * *** ** consensus_7506#0 TCGTCTC-- 603 consensus_7506#1 TTGCTACAC 572 * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||