cluster # 7507

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Schistosoma mansoni
cluster # 7507 cluster # 7507 Sequences # 5 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7507#0 length = 334 sequences # 1
consensus_7507#1 length = 305 sequences # 1

consensus_7507#2 length = 293 sequences # 1
consensus_7507#3 length = 234 sequences # 1
consensus_7507#4 length = 222 sequences # 1

consensusID : consensus_7507#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 334
fasta sequence

                              [TCGAAGCATTGTTCGTGTCTCGTGAAGTGAGATAGTGGGAAATGTTGATGTTGGGCATAGAGTACAAGGTAAACGTGGCAAATCACTTGATACAATAGCTATGAATATAGATTGATTAAGGTATTTTTCTTATAAATATTCATGTATATTAGAGTAAAGCGTGATGACGATCTAATTGAAAACAATTGTTCGCTTACATGTTTTGTTCTGAGGTATTTAAGACATGTGTTGTGTGTGCCTATTCAGTGTTCACTTTGACTTGGAATGTTTGGCAGTGTAGAAGTAGGTGAGAATAAAGTTAAGGATGGTCAAACCAAGACATGTCAACCAATCC]

[+] EMBL CD091893             [TCGAAGCATTGTTCGTGTCTCGTGAAGTGAGATAGTGGGAAATGTTGATGTTGGGCATAGAGTACAAGGTAAACGTGGCAAATCACTTGATACAATAGCTATGAATATAGATTGATTAAGGTATTTTTCTTATAAATATTCATGTATATTAGAGTAAAGCGTGATGACGATCTAATTGAAAACAATTGTTCGCTTACATGTTTTGTTCTGAGGTATTTAAGACATGTGTTGTGTGTGCCTATTCAGTGTTCACTTTGACTTGGAATGTTTGGCAGTGTAGAAGTAGGTGAGAATAAAGTTAAGGATGGTCAAACCAAGACATGTCAACCAATCC]




>consensus_7507#0
TCGAAGCATTGTTCGTGTCTCGTGAAGTGAGATAGTGGGAAATGTTGATGTTGGGCATAG
AGTACAAGGTAAACGTGGCAAATCACTTGATACAATAGCTATGAATATAGATTGATTAAG
GTATTTTTCTTATAAATATTCATGTATATTAGAGTAAAGCGTGATGACGATCTAATTGAA
AACAATTGTTCGCTTACATGTTTTGTTCTGAGGTATTTAAGACATGTGTTGTGTGTGCCT
ATTCAGTGTTCACTTTGACTTGGAATGTTTGGCAGTGTAGAAGTAGGTGAGAATAAAGTT
AAGGATGGTCAAACCAAGACATGTCAACCAATCC

consensusID : consensus_7507#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence

                              [AAGAACAAAGGATTTAACAAAATAACTACTGATAAGACTTTTGTTATCGTAATTTAATATTCTTACTACTATGAGTACGTCTAGCTTCCCACTATCAACTTGTACTTTTACCTATTATGCTCGGTGATGTATTTTATTTCATTGTGATTATTGAGTCAAATAGCCTTGATTGGTTTAACATTTTCGTATAAATATTCATGTATATTAGAGTAAAGCCTGATGACGATCTCATTGAAAACAATTGATCGCTTACATGTATTGTCCTACTTTTCACAATGGGAATCTTTAATATTCTAAAATAATAT]

[+] EMBL CD094071             [AAGAACAAAGGATTTAACAAAATAACTACTGATAAGACTTTTGTTATCGTAATTTAATATTCTTACTACTATGAGTACGTCTAGCTTCCCACTATCAACTTGTACTTTTACCTATTATGCTCGGTGATGTATTTTATTTCATTGTGATTATTGAGTCAAATAGCCTTGATTGGTTTAACATTTTCGTATAAATATTCATGTATATTAGAGTAAAGCCTGATGACGATCTCATTGAAAACAATTGATCGCTTACATGTATTGTCCTACTTTTCACAATGGGAATCTTTAATATTCTAAAATAATAT]




>consensus_7507#1
AAGAACAAAGGATTTAACAAAATAACTACTGATAAGACTTTTGTTATCGTAATTTAATAT
TCTTACTACTATGAGTACGTCTAGCTTCCCACTATCAACTTGTACTTTTACCTATTATGC
TCGGTGATGTATTTTATTTCATTGTGATTATTGAGTCAAATAGCCTTGATTGGTTTAACA
TTTTCGTATAAATATTCATGTATATTAGAGTAAAGCCTGATGACGATCTCATTGAAAACA
ATTGATCGCTTACATGTATTGTCCTACTTTTCACAATGGGAATCTTTAATATTCTAAAAT
AATAT

consensusID : consensus_7507#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [AACGACCGTCCAGTGTTCCCAGGTTTTCCACGATGGTCTACCTTCAATTGACTCATGATTTCAACTTTATACAAGAAATGAGAATATGTTTATGGATCAATACTTACTCTTTTATAATTACGTGATCTTAAATTACCTTAAATATATCACTAATGTTACATTATAATGAGTTGGATACTTTATTAGGATCATTTTTCACTATTCCTTCCGTTTGTATTCTTCACTAGCTAATTACTTACATACTTCTTATTACGTAATGATTTTAATGTTTTGTGATGACTAATCTAAGTCTA]

[+] EMBL CD202581             [AACGACCGTCCAGTGTTCCCAGGTTTTCCACGATGGTCTACCTTCAATTGACTCATGATTTCAACTTTATACAAGAAATGAGAATATGTTTATGGATCAATACTTACTCTTTTATAATTACGTGATCTTAAATTACCTTAAATATATCACTAATGTTACATTATAATGAGTTGGATACTTTATTAGGATCATTTTTCACTATTCCTTCCGTTTGTATTCTTCACTAGCTAATTACTTACATACTTCTTATTACGTAATGATTTTAATGTTTTGTGATGACTAATCTAAGTCTA]




>consensus_7507#2
AACGACCGTCCAGTGTTCCCAGGTTTTCCACGATGGTCTACCTTCAATTGACTCATGATT
TCAACTTTATACAAGAAATGAGAATATGTTTATGGATCAATACTTACTCTTTTATAATTA
CGTGATCTTAAATTACCTTAAATATATCACTAATGTTACATTATAATGAGTTGGATACTT
TATTAGGATCATTTTTCACTATTCCTTCCGTTTGTATTCTTCACTAGCTAATTACTTACA
TACTTCTTATTACGTAATGATTTTAATGTTTTGTGATGACTAATCTAAGTCTA

consensusID : consensus_7507#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 234
fasta sequence

                              [CTGTTTTTACTAGAATACATCACCAAGCCTGATAGGTAAAAGTACAAGTTGATAGTGGGAAGACAGGTGTACTGATAGTAGTAAGAATAGTAAATTACGATAACAAAAGTCTTATTCAATAATTAAACATAAGAATTAAGAGGTCAAACGTGGGTAAATAGACTAGAATAATAATCACAAAACATTAAAATCATTACGTGATAAGAAGTATGTAAGTAAATAGATAGTGAAGAA]

[+] EMBL CD092315             [CTGTTTTTACTAGAATACATCACCAAGCCTGATAGGTAAAAGTACAAGTTGATAGTGGGAAGACAGGTGTACTGATAGTAGTAAGAATAGTAAATTACGATAACAAAAGTCTTATTCAATAATTAAACATAAGAATTAAGAGGTCAAACGTGGGTAAATAGACTAGAATAATAATCACAAAACATTAAAATCATTACGTGATAAGAAGTATGTAAGTAAATAGATAGTGAAGAA]




>consensus_7507#3
CTGTTTTTACTAGAATACATCACCAAGCCTGATAGGTAAAAGTACAAGTTGATAGTGGGA
AGACAGGTGTACTGATAGTAGTAAGAATAGTAAATTACGATAACAAAAGTCTTATTCAAT
AATTAAACATAAGAATTAAGAGGTCAAACGTGGGTAAATAGACTAGAATAATAATCACAA
AACATTAAAATCATTACGTGATAAGAAGTATGTAAGTAAATAGATAGTGAAGAA

consensusID : consensus_7507#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 222
fasta sequence

                              [GAAGACAGGTGTACTGATAGTAGTAAGAATATTAAATTACGATAACAAAAGTCTTATCAATAGTTAAACATAGGAAATAAAAGGTCAAACGTGGGTAAATAGACTAGAATAGTATTCACGAAACGTTAAAATCATTACGTAGTAAGAAGTATGTAAGTAATTAGATAGTGAAGAATACAAACGGAAAGAGGTAGAAAATTACAAAAAATGATAACCAAAATA]

[+] EMBL CD167120             [GAAGACAGGTGTACTGATAGTAGTAAGAATATTAAATTACGATAACAAAAGTCTTATCAATAGTTAAACATAGGAAATAAAAGGTCAAACGTGGGTAAATAGACTAGAATAGTATTCACGAAACGTTAAAATCATTACGTAGTAAGAAGTATGTAAGTAATTAGATAGTGAAGAATACAAACGGAAAGAGGTAGAAAATTACAAAAAATGATAACCAAAATA]




>consensus_7507#4
GAAGACAGGTGTACTGATAGTAGTAAGAATATTAAATTACGATAACAAAAGTCTTATCAA
TAGTTAAACATAGGAAATAAAAGGTCAAACGTGGGTAAATAGACTAGAATAGTATTCACG
AAACGTTAAAATCATTACGTAGTAAGAAGTATGTAAGTAATTAGATAGTGAAGAATACAA
ACGGAAAGAGGTAGAAAATTACAAAAAATGATAACCAAAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7507#3      ------------CTGTTTTTACTAGAATACATCACCAAGCCTGATAGGTAAAAGTACAAG 48
consensus_7507#4      ------------------------------------------------------------
consensus_7507#0      TCGAAGCATTGTTCGTGTCTCGTGAAGTGAGATAGTGGGAAATGTTGATGTTGGGCATAG 60
consensus_7507#1      ----------------------AAGAACAAAGGATTTAACAAAATAACTACTGATAAGAC 38
consensus_7507#2      ---------AACGACCGTCCAGTGTTCCCAGGTTTTCCACGATGGTCTACCTTCAATTGA 51
                                                                                  

consensus_7507#3      TTGATAGTGGGAA---GACAGGTGTACTGATA--GTAG-TAAGAATAGTAAATTACGATA 102
consensus_7507#4      ----------GAA---GACAGGTGTACTGATA--GTAG-TAAGAATATTAAATTACGATA 44
consensus_7507#0      AGTACAAGGTAAACGTGGCAAATCACTTGATACAATAGCTATGAATATAGATTGATTAAG 120
consensus_7507#1      TTTTGTTATCGTA--ATTTAATATTCTTACTACTATGAGTACGTCTAGCTTCCCACTATC 96
consensus_7507#2      CTCATGATTTCAACTTTATACAAGAAATGAGAATATGTTTATGGATCAATACTTACTCTT 111
                                  *      *       *   *   *   ** *  *        *     

consensus_7507#3      ACAAAAGTCTTATTCAATAATTAAACATAAGAATTAAGAGGTCAAACGTGGGTAA-ATAG 161
consensus_7507#4      ACAAAAGTCTTAT-CAATAGTTAAACATAGGAAATAAAAGGTCAAACGTGGGTAA-ATAG 102
consensus_7507#0      GTATTTTTCTTAT-AAATATTCATGTATATTAGAGTAAAGCGTGATGACGATCTA-ATTG 178
consensus_7507#1      AACTTGTACTTTT--ACCTATTATGCTCGGTGATGTATTTTATTTCATTGTGATT-ATTG 153
consensus_7507#2      ---TTATAATTACGTGATCTTAAATTACCTTAAATATATCACTAATGTTACATTATAATG 168
                               **         * *                                 *  *

consensus_7507#3      ACTAGAATAATAATCACAAAACATTAAAATCATTACGTGAT-AAGAAGTATGTAA---GT 217
consensus_7507#4      ACTAGAATAGTATTCACGAAACGTTAAAATCATTACGTAGT-AAGAAGTATGTAA---GT 158
consensus_7507#0      AAAACAATTGTTCGC-TTACATGTTTTGTTC-TGAGGTATTTAAGACATGTGTTGTGTGT 236
consensus_7507#1      AGTCAAATAGCCTTGATTG-GTTTAACATTTTCGTATAAATATTCATGTATATTA---GA 209
consensus_7507#2      AGTTGGATA--CTTTATTAGGATCATTTTTCACTATTCCTT--CCGTTTGTATTC---TT 221
                      *     **                     *          *       * * *       

consensus_7507#3      AAATAGATAGTGAAGAA------------------------------------------- 234
consensus_7507#4      AATTAGATAGTGAAGAATACAAACGGAAAGAGGTAGAAAATTACAAAAAA-TGATAACCA 217
consensus_7507#0      GCCTATTCAGTGTTCACTTTGACTTGGAATGTTTGGCAGTGTAGAAGTAG-GTGAGAATA 295
consensus_7507#1      GTAAAGCCTGATGACGATCTCATTGAAAACAATTGATCGCTTACATGTA---TTGTCCTA 266
consensus_7507#2      CACTAGCTAATTACTTACATACTTCTTATTACGTAATGATTTTAATGTTTTGTGATGACT 281
                          *                                                       

consensus_7507#3      ---------------------------------------
consensus_7507#4      AAATA---------------------------------- 222
consensus_7507#0      AAGTTAAGGATGGTCAAACCAAGACATGTCAACCAATCC 334
consensus_7507#1      CTTTTCACAATGGGAATCTTTAATATTCTAAAATAATAT 305
consensus_7507#2      AATCTAAGTCTA--------------------------- 293