These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 558 fasta sequence [TTTTATGTTAGGTTAAGTATTATTGCCGACCCCCCACTTTTTTAGGACAACCTGGAAAGTGAATTGGCACTGACCACCATTCGGGTTTCACACTAGTAA-TGTACACATTACTGCGGGGTTTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTTGGATGGCGCTGGAAAAACAGTAGTTTTGGTTACATATGATTGACAAGTCTAGACCTATTTAGAACAAGCTAAAATAAATTTTGTTCCGAATTATAAATCTATCCCAATTCAGAAAATCACTACTACCGTTGGTCTAAATATCGGTTACATTGAGGTTGACGGGATCCGGCTTAAATTTTGGGATCTTGGAGGTCAAGAAGAGCTTCAGTCCTTGTGGGATAAGTACTACGCTGAATCAAACGGTGTTATTTATGTCGTTGATTCTGCAGATAGTGATCGTTTTGATGAATCAAAAGATGCATTTGATAAGATGGTAAGAAACCCTGTACTGGAAGGTGTACCGTTACTGGTTCTAGCTAACAAGCAAGATGTGCAGAGTGCATTCC] [-] EMBL CD193608 [TTTTATGTTAGGTTAAGTATTATTGCCGACCCCCCACTTTTTTAGGACAACCTGGAAAGTGAATTGGCACTGACCACCATTCGGGTTTCACACTAGTAA TGTACACATTACTGCGGGGTTTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTTGGATGGCGCTGGAAAAACAGTAGTTTTGGTTACATATGATTGACAAGTCTAGACCTATTTAGAACAAGCTAAAATAAATTTTGTTCCGAATTATAAATCTATCCCAATTCAGAAAATC ] [+] EMBL CD084283 [ agtcagtaTTTA GACAACCTGGAAAGTGAATTGGCACTGACCACCATTCGGGTTTCACACTAGTAAGTGTACACATTACTGCGGGGTTTGTGGCAATATATATCACAAAGTGATTAGTTTTCTGTCCTCATACTAGGTTTGGATGGCGCTGGAAAAACAGTAGTTTTGGTTACATATGATTGACAAGTCTAGACCTATTTAGAACAAGCTAAAATAAATTTTGTTCCGAATTATAAATCTATCCCAATTCAGAAAATCACTACTACCGTTGGTCTAAATATCGGTTACATTGAGGTTGACGGGATCCGGCTTAAATTTTGGGATCTTGGAGGTCAAGAAGAGCTTCAGTCCTTGTGGGATAAGTACTACGCTGAATCAAACGGTGTTATTTATGTCGTTGATTCTGCAGATAGTGATCGTTTTGATGAATCAAAAGATGCATTTGATAAGATGGTAAGAAACCCTGTACTGGAAGGTGTACCGTTACTGGTTCTAGCTAACAAGCAAGATGTGCAGAGTGCATTCC] consensusID : consensus_7523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 511 fasta sequence [GTGAACGGCGCTAGCCACCATTCGGGTTTCACACTAGTAATGTACACATTACTGCGGGGTTTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTTGGATGGCGCTGGAAAAACAACCTATTTAGAACAAGCTAAAATAAATTTTGTTCCGAATTATAAATCTATCCCAATTCAGAAAATCACTACTACCGTTGGTCTAAATATCGGTTACATTGAGGTTGACGGGATCCGGCTTACATTTTGGGATCTTGGAGGTCAAGAAGAGCTTCAGTCCTTGTGGGATAAGTACTACGCTGAATCATACGGTGTTATNTATGTCGCTGATTCTGCAGATAGTGATCGTTTTGATGAATCAAAAGATGCATTTGATAAGATGGTAAGAAACCCTGTACTGGAAGGTGTACCGTTACTGGTTCTAGCTAACAAGCAAGATGTGCAGAGTGCATTCCATTTGTCTGAAATCAACAAAGTCTTCTACGATAGCCTGCGTCTTG] [+] EMBL CD151975 [GTGAACGGCGCTAGCCACCATTCGGGTTTCACACTAGTAATGTACACATTACTGCGGGGTTTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTTGGATGGCGCTGGAAAAACAACCTATTTAGAACAAGCTAAAATAAATTTTGTTCCGAATTATAAATCTATCCCAATTCAGAAAATCACTACTACCGTTGGTCTAAATATCGGTTACATTGAGGTTGACGGGATCCGGCTTACATTTTGGGATCTTGGAGGTCAAGAAGAGCTTCAGTCCTTGTGGGATAAGTACTACGCTGAATCATACGGTGTTATNTATGTCGCTGATTCTGCAGATAGTGATCGTTTTGATGAATCAAAAGAT ] [-] EMBL CD097176 [ GGATGAGTTTTCTGTCCTCATACTAGGTTTGGATGGCGCTGGAAAAACAACCTATTTAGAACAAGCTAAAATAAATTTTGTTCCGAATTATAAATCTATCCCAATTCAGAAAATCACTACTACCGTTGGTCTAAATATCGGTTACATTGAGGTTGACGGGATCCGGCTTAAATTTTGGGATCTTGGAGGTCAAGAAGAGCTTCAGTCCTTGTGGGATAAGTACTACGCTGAATCAAACGGTGTTATTTATGTCGTTGATTCTGCAGATAGTGATCGTTTTGATGAATCAAAAGATGCATTTGATAAGATGGTAAGAAACCCTGTACTGGAAGGTGTACCGTTACTGGTTCTAGCTAACAAGCAAGATGTGCAGAGTGCATTCCATTTGTCTGAAATCAACAAAGTCTTCTACGATAGCCTGCGTCTTG] consensusID : consensus_7523#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 227 fasta sequence [CGCAGGCCAGAATTCGGCACGAGGGCGTATGGTGTGAATATAGTCAGTATTTAGACAACCTGGAAAGTGAATTGGCACTGACCACCATTCGGGTTTCACACTAGTAATGTACACATTACTGCGGGGTTTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTTGGATGGCGCTGGAAAACAGTAGTTNTGGTTACATATGATTGACAAGT] [+] EMBL CD077544 [CGCAGGCCAGAATTCGGCACGAGGGCGTATGGTGTGAATATAGTCAGTATTTAGACAACCTGGAAAGTGAATTGGCACTGACCACCATTCGGGTTTCACACTAGTAATGTACACATTACTGCGGGGTTTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTTGGATGGCGCTGGAAAACAGTAGTTNTGGTTACATATGATTGACAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7523#0 --------TTTTATGTTAGGTTAAGTATTATTGCCGACCCCCCACTTTTTTAGGACAACC 52 consensus_7523#1 ------------------------------------------------------------ consensus_7523#2 CGCAGGCCAGAATTCGGCACGAGGGCGTATGGTGTGAATATAGTCAGTATTTAGACAACC 60 consensus_7523#0 TGGAAAGTGAATTGGCACTGACCACCATTCGGGTTTCACACTAGTAATGTACACATTACT 112 consensus_7523#1 ------GTGAAC-GGCGCTAGCCACCATTCGGGTTTCACACTAGTAATGTACACATTACT 53 consensus_7523#2 TGGAAAGTGAATTGGCACTGACCACCATTCGGGTTTCACACTAGTAATGTACACATTACT 120 ***** *** ** *************************************** consensus_7523#0 GCGGGGTTTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTT 172 consensus_7523#1 GCGGGGTTTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTT 113 consensus_7523#2 GCGGGGTTTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTT 180 ************************************************************ consensus_7523#0 GGATGGCGCTGGAAAAACAGTAGTTTTGGTTACATATGATTGACAAGTCTAGACCTATTT 232 consensus_7523#1 GGATGGCGCTGGAAAAACA---------------------------------ACCTATTT 140 consensus_7523#2 GGATGGCGCTGGAAAACAG------------------------------TAGTTNTGGTT 210 **************** * ** consensus_7523#0 AGAACAAGCTAAAATAAATTTTGTTCCGAATTATAAATCTATCCCAATTCAGAAAATCAC 292 consensus_7523#1 AGAACAAGCTAAAATAAATTTTGTTCCGAATTATAAATCTATCCCAATTCAGAAAATCAC 200 consensus_7523#2 ACATATGATTGA--CAAGT----------------------------------------- 227 * * * * ** * consensus_7523#0 TACTACCGTTGGTCTAAATATCGGTTACATTGAGGTTGACGGGATCCGGCTTAAATTTTG 352 consensus_7523#1 TACTACCGTTGGTCTAAATATCGGTTACATTGAGGTTGACGGGATCCGGCTTACATTTTG 260 consensus_7523#2 ------------------------------------------------------------ consensus_7523#0 GGATCTTGGAGGTCAAGAAGAGCTTCAGTCCTTGTGGGATAAGTACTACGCTGAATCAAA 412 consensus_7523#1 GGATCTTGGAGGTCAAGAAGAGCTTCAGTCCTTGTGGGATAAGTACTACGCTGAATCATA 320 consensus_7523#2 ------------------------------------------------------------ consensus_7523#0 CGGTGTTATTTATGTCGTTGATTCTGCAGATAGTGATCGTTTTGATGAATCAAAAGATGC 472 consensus_7523#1 CGGTGTTATNTATGTCGCTGATTCTGCAGATAGTGATCGTTTTGATGAATCAAAAGATGC 380 consensus_7523#2 ------------------------------------------------------------ consensus_7523#0 ATTTGATAAGATGGTAAGAAACCCTGTACTGGAAGGTGTACCGTTACTGGTTCTAGCTAA 532 consensus_7523#1 ATTTGATAAGATGGTAAGAAACCCTGTACTGGAAGGTGTACCGTTACTGGTTCTAGCTAA 440 consensus_7523#2 ------------------------------------------------------------ consensus_7523#0 CAAGCAAGATGTGCAGAGTGCATTCC---------------------------------- 558 consensus_7523#1 CAAGCAAGATGTGCAGAGTGCATTCCATTTGTCTGAAATCAACAAAGTCTTCTACGATAG 500 consensus_7523#2 ------------------------------------------------------------ consensus_7523#0 ----------- consensus_7523#1 CCTGCGTCTTG 511 consensus_7523#2 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||