These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7535#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1120 fasta sequence [CCGAGCCAATTTTCGGCACGAGGGTTGCTTGTGTACAATGAGCAAAAAGGTCATTTGCCTATTTGACGTTGATGGGACACTTACAAAGCCACGCAATATTATATCCGATCATATGTCTGGATTTTTGCTTAAATTGTGCTCTAATGTTCCCTTGGCTGTGGTTAGTGGTTCGGATTTCCAGAAAGTTTCGTCACAGATTGGGACATTAGCTACCGAAAAATTTCCATATATATTCTCTGAAAATGGTTTAGTAGTACACAATTATGGTCAGAAAATTAAAAGTACGAATATTGTTGAGCATGTTAGTGAAGACACCCTTCAACGTTTCATCAACTTTTGCCTCCAGTATATGTCGAACCTCTGGCTTCCGAGGAAAAGAGGAAATTTTATTGAATTCAGAAATGGTTTGATAAATGTTTGTCCAGTTGGACGAAGCTGTAGTCAAGAAGAACGAGATGAATTTGCTGAATATGATGCGAAACATAAAATTCGCGAAGATTTTGTCATGAAAATGCGTTCGGAATTTGATTCAAGTCCTTTACAATTCGCTATAGGTGGACAAATTAGTATTGATGTTTTTCCAAAAGGTTGGGACCAACGATACTGTTTACAATTCTTGGAAGATTACGATACTATACATTTTTTTGGCGACAAAACAGAGGAGGGTGGAAATGATTACGAAATATTCAGTGACCCACGAACTATTGGACATACTGTCACATCACCGGAAAATACAGAAGCTCAACTCAAAGCGTTATTCCCTGAATATTGTTAATCATGTATATAAATAAACCCATAGCAATAAGAAATGACAGCGTTTGGAAAAGAAAAATATAAGTGCAAATCTATTTTTAAATCGTTTTTGTAAACAGAATTTTAGTTTACACTAGGCACAGTTTTGTTTGTTCATTTGTTACTTTGACTTCTTGTTTATACTTAAATATTACTATTGTTTGATGATTGATTATTCCAGTTTGTGCGCGATGATGGTATTTTATAGAACAATAGTTATTACTTTTTAATATTGCCATATCTTATCTTATTTTGTCCTTTTTTTAATTCATTAGGTTACTTTTCCTGTAGAAACTATAATATGTTATTGTATTTGTAATTAGATATT] [+] EMBL CD083289 [CCGAGCCAATTTTCGGCACGAGGGTTGCTTGTGTACAATGAGCAAAAAGGTCATTTGCCTATTTGACGTTGATGGGACACTTACAAAGCCACGCAATATTATATCCGATCATATGTCTGGATTTTTGCTTAAATTGTGCTCTAATGTTCCCTTGGCTGTGGTTAGTGGTTCGGATTTCCAGAAAGTTTCGTCACAGATTGGGACATTAGCTACCGAAAAATTTCCATATATATTCTCTGAAAATGGTTTAGTAGTACACAATTATGGTCAGAAAATTAAAAGTACGAATATTGTTGAGCATGTTAGTGAAGACACCCTTCAACGTTTCATCAACTTTTGCCTCCAGTATATGTCGAACCTCTGGCTTCCGAGGAAAAGAGGAAATTTTATTGAATTCAGAAATGGTTTGATAAATGTTTGTCCAGTTGGACGAAGCTGTAGTCAAGAAGAACGAGATGAATTTGCTGAATATGATGCGAAACATAAAATTCGCGAAGATTTTGTCATGAAAATGCGTTCGGAATTTGATTCAAGTCCTTTACAATTCGCTATAGGTGGACAAATTAGTATTGATGTTTTTCCAAAAGGTTGGGACCAACGATACTGTTTACAA ] [-] EMBL CD076860 [ GTATTGATGTTTTTCCAAAAGGTTGGGACAAACGATACTGTTTACAATTCTTGGAAGATTACGATACTATACATTTTTTTGGCGACAAAACAGAGGAGGGTGGAAATGATTACGAAATATTCAGTGACCCACGAACTATTGGACATACTGTCACATCACCGGAAAATACAGAAGCTCAACTCAAAGCGTTATTCCCTGAATATTGTTAATCATGTATATAAATAAACCCATAGCAATAAGAAATGACAGCGTTTGGAAAAGAAAAATATAAGTGCAAATCTATTTTTAAATCGTTTTTGTAAACAGAATTTTAGTTTACACTAGGCACAGTTTTGTTTGTTCATTTGTTACTTTGACTTCTTGTTTATACTTAAATATTACTATTGTTTGATGATTGATTATTCCAGTTTGTGCGCGATGATGGTATTTTATAGAACAATAGTTATTACTTTTTAATATTGCCATATCTTATCTTATTTTGTCCTTTTTTTAATTCATTAGGTTACTTTTCCTGTAGAAACTATAATATGTTATTGTATTTGTAATTAGATATT] consensusID : consensus_7535#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 605 fasta sequence [TTTACTCTTGTGATTTGTTGCATGTTGCTTGTGTACAATGAGCAAAAAGGTCATTTGCCTATTTGACGTTGATGGGACACTTACAAAGCCACGCAATATTATATCCGATCATATGTCTGGATTTTTGCTTAAATTGTGCTCTAATGTTCCCTTGGCTGTGGTTAGTGGTTCGGATTTCCAGAAAGTTTCGTCACAGATTGGGACATTAGCTACCGAAAAATTTCCATATATATTCTCTGAAAATGGTTTAGTAGTACACAATTATGGTCAGAAAATTAAAAGTACGAATATTGTTGAGCATGTTAGTGAAGACACCCTTCAACGTTTCATCAACTTTTGCCTCCAGTATATGTCGAACCTCTGGCTTCCGAGGAAAAGAGGAAATTTTATTGAATTCAGAAATGGTTTGATAAATGTTTGTCCAGTTGGACGAAGCTGTAGTCAAGAAGAACGAGATGAATTTGCTGAATATGATGCGAAACATAAAATTCGCGAAGATTTTGTCATGAAAATGCGTTCGGAATTTGATTCAAGTCCTTTACAATTCGCTATAGGTGGACAAATTAGTATTGATGTTTTTCCAAAAGGTTGGGACAAACGATACT] [+] EMBL AW017469 [TTTACTCTTGTGATTTGTTGCATGTTGCTTGTGTACAATGAGCAAAAAGGTCATTTGCCTATTTGACGTTGATGGGACACTTACAAAGCCACGCAATATTATATCCGATCATATGTCTGGATTTTTGCTTAAATTGTGCTCTAATGTTCCCTTGGCTGTGGTTAGTGGTTCGGATTTCCAGAAAGTTTCGTCACAGATTGGGACATTAGCTACCGAAAAATTTCCATATATATTCTCTGAAAATGGTTTAGTAGTACACAATTATGGTCAGAAAATTAAAAGTACGAATATTGTTGAGCATGTTAGTGAAGACACCCTTCAACGTTTCATCAACTTTTGCCTCCAGTATATGTCGAACCTCTGGCTTCCGAGGAAAAGAGGAAATTTTATTGAATTCAGAAATGGTTTGATAAATGTTTGTCCAGTTGGACGAAGCTGTAGTCAAGAAGAACGAGATGAATTTGCTGAATATGATGCGAAACATAAAATTCGCGAAGATTTTGTCATGAAAATGCGTTCGGAATTTGATTCAAGTCCTTTACAATTCGCTATAGGTGGACAAATTAGTATTGATGTTTTTCCAAAAGGTTGGGACAAACGATACT] [-] EMBL CD200282 [ CATTTGCCTATTTGACGTTGATGGGACACTTACAAAGCCACGCAATATTATATCCGATCATATGTCTGGATTTTTGCTTAAATTGTGCTCTAATGTTCCCTTGGCTGTGGTTAGTGGTTCGGATTTCCAGAAAGTTTCGTCACAGATTGGGACATTAGCTACCGAAAAATTTCCATATATATTCTCTGAAAATGGTTTAGTAGTACACAATTATGGTCAGAAAATTAAAAGTACGAATATTGTTGAGCATGTTAGTGAAGACACCCTTCAACGTTTCATCAACTTTTGCCTCCAGTATATGTCGAACCT ] [+] EMBL BE505126 [ TATTGAATTCAGAAATGGTTTGATAAATGTTTGTCCAGTTGGACGAAGCTGTAGTCAAGAAGAACGAGATGAATTTGCTGAATATGATGCGAAACATAAAATTCGCGAAGATTTTGTCATGAAAATGCGTTCGGNATTTGATTCAAGTCCTTTACAATTCGCTATAGGNGGACAAATTAGTATTGANGTTTTTCCAAAAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7535#0 -CCGAGCCAATTTTCGGCACGAGGGTTGCTTGTGTACAATGAGCAAAAAGGTCATTTGCC 59 consensus_7535#1 TTTACTCTTGTGATTTGT-TGCATGTTGCTTGTGTACAATGAGCAAAAAGGTCATTTGCC 59 * * * * * ************************************ consensus_7535#0 TATTTGACGTTGATGGGACACTTACAAAGCCACGCAATATTATATCCGATCATATGTCTG 119 consensus_7535#1 TATTTGACGTTGATGGGACACTTACAAAGCCACGCAATATTATATCCGATCATATGTCTG 119 ************************************************************ consensus_7535#0 GATTTTTGCTTAAATTGTGCTCTAATGTTCCCTTGGCTGTGGTTAGTGGTTCGGATTTCC 179 consensus_7535#1 GATTTTTGCTTAAATTGTGCTCTAATGTTCCCTTGGCTGTGGTTAGTGGTTCGGATTTCC 179 ************************************************************ consensus_7535#0 AGAAAGTTTCGTCACAGATTGGGACATTAGCTACCGAAAAATTTCCATATATATTCTCTG 239 consensus_7535#1 AGAAAGTTTCGTCACAGATTGGGACATTAGCTACCGAAAAATTTCCATATATATTCTCTG 239 ************************************************************ consensus_7535#0 AAAATGGTTTAGTAGTACACAATTATGGTCAGAAAATTAAAAGTACGAATATTGTTGAGC 299 consensus_7535#1 AAAATGGTTTAGTAGTACACAATTATGGTCAGAAAATTAAAAGTACGAATATTGTTGAGC 299 ************************************************************ consensus_7535#0 ATGTTAGTGAAGACACCCTTCAACGTTTCATCAACTTTTGCCTCCAGTATATGTCGAACC 359 consensus_7535#1 ATGTTAGTGAAGACACCCTTCAACGTTTCATCAACTTTTGCCTCCAGTATATGTCGAACC 359 ************************************************************ consensus_7535#0 TCTGGCTTCCGAGGAAAAGAGGAAATTTTATTGAATTCAGAAATGGTTTGATAAATGTTT 419 consensus_7535#1 TCTGGCTTCCGAGGAAAAGAGGAAATTTTATTGAATTCAGAAATGGTTTGATAAATGTTT 419 ************************************************************ consensus_7535#0 GTCCAGTTGGACGAAGCTGTAGTCAAGAAGAACGAGATGAATTTGCTGAATATGATGCGA 479 consensus_7535#1 GTCCAGTTGGACGAAGCTGTAGTCAAGAAGAACGAGATGAATTTGCTGAATATGATGCGA 479 ************************************************************ consensus_7535#0 AACATAAAATTCGCGAAGATTTTGTCATGAAAATGCGTTCGGAATTTGATTCAAGTCCTT 539 consensus_7535#1 AACATAAAATTCGCGAAGATTTTGTCATGAAAATGCGTTCGGAATTTGATTCAAGTCCTT 539 ************************************************************ consensus_7535#0 TACAATTCGCTATAGGTGGACAAATTAGTATTGATGTTTTTCCAAAAGGTTGGGACCAAC 599 consensus_7535#1 TACAATTCGCTATAGGTGGACAAATTAGTATTGATGTTTTTCCAAAAGGTTGGGACAAAC 599 ******************************************************** *** consensus_7535#0 GATACTGTTTACAATTCTTGGAAGATTACGATACTATACATTTTTTTGGCGACAAAACAG 659 consensus_7535#1 GATACT------------------------------------------------------ 605 ****** consensus_7535#0 AGGAGGGTGGAAATGATTACGAAATATTCAGTGACCCACGAACTATTGGACATACTGTCA 719 consensus_7535#1 ------------------------------------------------------------ consensus_7535#0 CATCACCGGAAAATACAGAAGCTCAACTCAAAGCGTTATTCCCTGAATATTGTTAATCAT 779 consensus_7535#1 ------------------------------------------------------------ consensus_7535#0 GTATATAAATAAACCCATAGCAATAAGAAATGACAGCGTTTGGAAAAGAAAAATATAAGT 839 consensus_7535#1 ------------------------------------------------------------ consensus_7535#0 GCAAATCTATTTTTAAATCGTTTTTGTAAACAGAATTTTAGTTTACACTAGGCACAGTTT 899 consensus_7535#1 ------------------------------------------------------------ consensus_7535#0 TGTTTGTTCATTTGTTACTTTGACTTCTTGTTTATACTTAAATATTACTATTGTTTGATG 959 consensus_7535#1 ------------------------------------------------------------ consensus_7535#0 ATTGATTATTCCAGTTTGTGCGCGATGATGGTATTTTATAGAACAATAGTTATTACTTTT 1019 consensus_7535#1 ------------------------------------------------------------ consensus_7535#0 TAATATTGCCATATCTTATCTTATTTTGTCCTTTTTTTAATTCATTAGGTTACTTTTCCT 1079 consensus_7535#1 ------------------------------------------------------------ consensus_7535#0 GTAGAAACTATAATATGTTATTGTATTTGTAATTAGATATT 1120 consensus_7535#1 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Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||