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Schistosoma mansoni
cluster # 7537 cluster # 7537       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7537#0 length = 544 sequences # 2  
consensus_7537#1 length = 521 sequences # 3  

consensusID : consensus_7537#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 544
fasta sequence
                              [TGCACATAGTAGGTCTATTCATGTGGCTCANTACAGTCGGAAAGTATCCAATTGTAATAATTCCGGGTGATGGAGGGTGTCAGGCGTATAGCAAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTCGAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCCAGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAAAATCTGGATAGTTATAAACATAGCAGAACTGAATACCGTGGCCCGATGATTGAGTCATTGCGTCTAGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCACCCTTCGATTTCCGTAAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATGCGCCTGATTGAGGAAACTTACCAAAATGGTGGAAACCGGTCTGTTGTTTTGCTTGGCCATAGTTTGGGGGCTAAATACGGTATGTACTTCTTAAAGTCAATGAAGAAAAG]

[+] EMBL CD127538             [TGCACATAGTAGGTCTATTCATGTGGCTCANTACAGTCGGAAAGTATCCAATTGTAATAATTCCGGGTGATGGAGGGTGTCAGGCGTATAGCAAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTCGAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCCAGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAAAATCTGGATAGTTATAAACATAGCAGAACTGAATACCGTGGCCCGATGATTGAGTCATTGCGTCTAGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCACCCTTCGATTTCCGTAAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATGCGCCTGATTGAGGAAACTTACCAAAATGGTGGAAACCGGTCTGTTGTTTTGCTTGGCCATAGTTTGGGGGCTAAATACGGTATGTACTTCTTAAAGTCAATGAAGAAAAG]
[+] EMBL CD127075             [                                                                                                                                                                                                                                                                                                                                                          CTTTGTTTCCAACTGGACTATTCNCGGCGCACCCTTCNATTTCCGTAAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATGCGCCTGATTGAGGAAACTTACCAAAATGGTGGAAACCGGTCTGTTGTTTTGCTTGGCCATAGTTTGGGGGCTAAATACGGTATGTACTTCTTAAAGTCAATG        ]


>consensus_7537#0 TGCACATAGTAGGTCTATTCATGTGGCTCANTACAGTCGGAAAGTATCCAATTGTAATAA TTCCGGGTGATGGAGGGTGTCAGGCGTATAGCAAGCTAAAAAACTCAACGTCACCTCCTT TTTTAGTATGGATAGATCTACGTTACTTTCTCGAACCGGGGAAGCTAAATCAATACTTCG GCTTAGTGTATGATCCAGTCACCAGAAAGTCCAGGGATCCTGACATCGCAGAAGTATATT TCCCAGGTTGGGGTGAAACGTGGTCTATCGAAAATCTGGATAGTTATAAACATAGCAGAA CTGAATACCGTGGCCCGATGATTGAGTCATTGCGTCTAGATCCTTTCTTTGTATCCAACT GGACTATTCGCGGCGCACCCTTCGATTTCCGTAAAGCTCCAAACGAAAATGAGGGCTTTA ATGACAAACTTATGCGCCTGATTGAGGAAACTTACCAAAATGGTGGAAACCGGTCTGTTG TTTTGCTTGGCCATAGTTTGGGGGCTAAATACGGTATGTACTTCTTAAAGTCAATGAAGA AAAG



consensusID : consensus_7537#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 521
fasta sequence
                              [TGTCCTTCAGGTTGTTTGCGGCGATAATCAGGTGATATTTCGGTTATGATAACCATATGGGCCACTTACTCTGGACATGCATTATTTGCTTCTTCTTTTCTATTCATGTGGCTCATATACAGTCGGAAAAGTATCCAATTGTAATAATTCCGGGTGATGG-AGGGTGTCAGGCGTATAGCAAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTCGAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCCAGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAAAATCTGGATAGTTATAAACATAGCAGAACTGAATACTGTGGCCCGATGATTGAGTCATTGCGTCTTGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCACCCTTCGATTTCCGTAAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATG]

[+] EMBL CD097765             [TGTCCTTCAGGTTGTTTGCGGCGATAATCAGGTGATATTTCGGTTATGATAACCATATGGGCCACTTACTCTGGACATGCATTATTTGCTTCTTCTTTTCTATTCATGTGGCTCATATACAGTCGGAAAAGTATCCAATTGTAATAATTCCGGGTGATGG AGGGTGTCAGGCGTATAGCAAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTCGAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCCAGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAAAATCTGGATAGTTATAAACATAGCAGAACTGAATACTGTGGCCCGATGATTGAGTCATTGCGTCTTGATACTTTCTTT                                                                                    ]
[+] EMBL CD083842             [                             gGGTGATATTTCGGTTATGATAACCATATGGGCCACTTACTCTGGACATGCATTATTTGCTTCTTCTTTTCTATTCATGTGGCTCATATACAGTCGGAAAAGTATCCAATTGTAATAATTCCGGGTGATGG AGGGTGTCAGGCGTATAGCAAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTCGAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCCAGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAAAATCTGGATAGTTATAAACATAGCAGAACTGAATACTGTGGCCCGATGATTGAGTCATTGCGTCTTGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCACCCTTCGATTTCCGTAAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATG]
[+] EMBL CD112710             [                                                                                                                                          TTGTAATAATTCCGGGTGATGGCATGGTGTCAGGCGTATAGCAAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTCGAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCCAGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAAAATCTGGATAGTTATAAACATAGCAGAACTGAATACTGTGCGCCGATGATTGAGTCATTGCGTCTTGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCA CCTTCGA TTCCGTAA                                        ]


>consensus_7537#1 TGTCCTTCAGGTTGTTTGCGGCGATAATCAGGTGATATTTCGGTTATGATAACCATATGG GCCACTTACTCTGGACATGCATTATTTGCTTCTTCTTTTCTATTCATGTGGCTCATATAC AGTCGGAAAAGTATCCAATTGTAATAATTCCGGGTGATGGAGGGTGTCAGGCGTATAGCA AGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTCG AACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCCA GGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAAA ATCTGGATAGTTATAAACATAGCAGAACTGAATACTGTGGCCCGATGATTGAGTCATTGC GTCTTGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCACCCTTCGATTTCCGTA AAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7537#0      ------------------------------------------------------------
consensus_7537#1      TGTCCTTCAGGTTGTTTGCGGCGATAATCAGGTGATATTTCGGTTATGATAACCATATGG 60
                                                                                  

consensus_7537#0      --------------------------TGCACATAGTAGGTCTATTCATGTGGCTCAN-TA 33
consensus_7537#1      GCCACTTACTCTGGACATGCATTATTTGCTTCTTCTTT-TCTATTCATGTGGCTCATATA 119
                                                ***   *  *   *****************  **

consensus_7537#0      CAGTCGGAAA-GTATCCAATTGTAATAATTCCGGGTGATGGAGGGTGTCAGGCGTATAGC 92
consensus_7537#1      CAGTCGGAAAAGTATCCAATTGTAATAATTCCGGGTGATGGAGGGTGTCAGGCGTATAGC 179
                      ********** *************************************************

consensus_7537#0      AAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTC 152
consensus_7537#1      AAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTC 239
                      ************************************************************

consensus_7537#0      GAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCC 212
consensus_7537#1      GAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCC 299
                      ************************************************************

consensus_7537#0      AGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAA 272
consensus_7537#1      AGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAA 359
                      ************************************************************

consensus_7537#0      AATCTGGATAGTTATAAACATAGCAGAACTGAATACCGTGGCCCGATGATTGAGTCATTG 332
consensus_7537#1      AATCTGGATAGTTATAAACATAGCAGAACTGAATACTGTGGCCCGATGATTGAGTCATTG 419
                      ************************************ ***********************

consensus_7537#0      CGTCTAGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCACCCTTCGATTTCCGT 392
consensus_7537#1      CGTCTTGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCACCCTTCGATTTCCGT 479
                      ***** ******************************************************

consensus_7537#0      AAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATGCGCCTGATTGAGGAAACT 452
consensus_7537#1      AAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATG------------------ 521
                      ******************************************                  

consensus_7537#0      TACCAAAATGGTGGAAACCGGTCTGTTGTTTTGCTTGGCCATAGTTTGGGGGCTAAATAC 512
consensus_7537#1      ------------------------------------------------------------
                                                                                  

consensus_7537#0      GGTATGTACTTCTTAAAGTCAATGAAGAAAAG 544
consensus_7537#1      --------------------------------
                                                      




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)