These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7537#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 544 fasta sequence [TGCACATAGTAGGTCTATTCATGTGGCTCANTACAGTCGGAAAGTATCCAATTGTAATAATTCCGGGTGATGGAGGGTGTCAGGCGTATAGCAAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTCGAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCCAGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAAAATCTGGATAGTTATAAACATAGCAGAACTGAATACCGTGGCCCGATGATTGAGTCATTGCGTCTAGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCACCCTTCGATTTCCGTAAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATGCGCCTGATTGAGGAAACTTACCAAAATGGTGGAAACCGGTCTGTTGTTTTGCTTGGCCATAGTTTGGGGGCTAAATACGGTATGTACTTCTTAAAGTCAATGAAGAAAAG] [+] EMBL CD127538 [TGCACATAGTAGGTCTATTCATGTGGCTCANTACAGTCGGAAAGTATCCAATTGTAATAATTCCGGGTGATGGAGGGTGTCAGGCGTATAGCAAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTCGAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCCAGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAAAATCTGGATAGTTATAAACATAGCAGAACTGAATACCGTGGCCCGATGATTGAGTCATTGCGTCTAGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCACCCTTCGATTTCCGTAAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATGCGCCTGATTGAGGAAACTTACCAAAATGGTGGAAACCGGTCTGTTGTTTTGCTTGGCCATAGTTTGGGGGCTAAATACGGTATGTACTTCTTAAAGTCAATGAAGAAAAG] [+] EMBL CD127075 [ CTTTGTTTCCAACTGGACTATTCNCGGCGCACCCTTCNATTTCCGTAAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATGCGCCTGATTGAGGAAACTTACCAAAATGGTGGAAACCGGTCTGTTGTTTTGCTTGGCCATAGTTTGGGGGCTAAATACGGTATGTACTTCTTAAAGTCAATG ] consensusID : consensus_7537#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 521 fasta sequence [TGTCCTTCAGGTTGTTTGCGGCGATAATCAGGTGATATTTCGGTTATGATAACCATATGGGCCACTTACTCTGGACATGCATTATTTGCTTCTTCTTTTCTATTCATGTGGCTCATATACAGTCGGAAAAGTATCCAATTGTAATAATTCCGGGTGATGG-AGGGTGTCAGGCGTATAGCAAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTCGAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCCAGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAAAATCTGGATAGTTATAAACATAGCAGAACTGAATACTGTGGCCCGATGATTGAGTCATTGCGTCTTGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCACCCTTCGATTTCCGTAAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATG] [+] EMBL CD097765 [TGTCCTTCAGGTTGTTTGCGGCGATAATCAGGTGATATTTCGGTTATGATAACCATATGGGCCACTTACTCTGGACATGCATTATTTGCTTCTTCTTTTCTATTCATGTGGCTCATATACAGTCGGAAAAGTATCCAATTGTAATAATTCCGGGTGATGG AGGGTGTCAGGCGTATAGCAAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTCGAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCCAGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAAAATCTGGATAGTTATAAACATAGCAGAACTGAATACTGTGGCCCGATGATTGAGTCATTGCGTCTTGATACTTTCTTT ] [+] EMBL CD083842 [ gGGTGATATTTCGGTTATGATAACCATATGGGCCACTTACTCTGGACATGCATTATTTGCTTCTTCTTTTCTATTCATGTGGCTCATATACAGTCGGAAAAGTATCCAATTGTAATAATTCCGGGTGATGG AGGGTGTCAGGCGTATAGCAAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTCGAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCCAGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAAAATCTGGATAGTTATAAACATAGCAGAACTGAATACTGTGGCCCGATGATTGAGTCATTGCGTCTTGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCACCCTTCGATTTCCGTAAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATG] [+] EMBL CD112710 [ TTGTAATAATTCCGGGTGATGGCATGGTGTCAGGCGTATAGCAAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTCGAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCCAGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAAAATCTGGATAGTTATAAACATAGCAGAACTGAATACTGTGCGCCGATGATTGAGTCATTGCGTCTTGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCA CCTTCGA TTCCGTAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7537#0 ------------------------------------------------------------ consensus_7537#1 TGTCCTTCAGGTTGTTTGCGGCGATAATCAGGTGATATTTCGGTTATGATAACCATATGG 60 consensus_7537#0 --------------------------TGCACATAGTAGGTCTATTCATGTGGCTCAN-TA 33 consensus_7537#1 GCCACTTACTCTGGACATGCATTATTTGCTTCTTCTTT-TCTATTCATGTGGCTCATATA 119 *** * * ***************** ** consensus_7537#0 CAGTCGGAAA-GTATCCAATTGTAATAATTCCGGGTGATGGAGGGTGTCAGGCGTATAGC 92 consensus_7537#1 CAGTCGGAAAAGTATCCAATTGTAATAATTCCGGGTGATGGAGGGTGTCAGGCGTATAGC 179 ********** ************************************************* consensus_7537#0 AAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTC 152 consensus_7537#1 AAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTC 239 ************************************************************ consensus_7537#0 GAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCC 212 consensus_7537#1 GAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCC 299 ************************************************************ consensus_7537#0 AGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAA 272 consensus_7537#1 AGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAA 359 ************************************************************ consensus_7537#0 AATCTGGATAGTTATAAACATAGCAGAACTGAATACCGTGGCCCGATGATTGAGTCATTG 332 consensus_7537#1 AATCTGGATAGTTATAAACATAGCAGAACTGAATACTGTGGCCCGATGATTGAGTCATTG 419 ************************************ *********************** consensus_7537#0 CGTCTAGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCACCCTTCGATTTCCGT 392 consensus_7537#1 CGTCTTGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCACCCTTCGATTTCCGT 479 ***** ****************************************************** consensus_7537#0 AAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATGCGCCTGATTGAGGAAACT 452 consensus_7537#1 AAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATG------------------ 521 ****************************************** consensus_7537#0 TACCAAAATGGTGGAAACCGGTCTGTTGTTTTGCTTGGCCATAGTTTGGGGGCTAAATAC 512 consensus_7537#1 ------------------------------------------------------------ consensus_7537#0 GGTATGTACTTCTTAAAGTCAATGAAGAAAAG 544 consensus_7537#1 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||