|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1213 fasta sequence
[ATAAAAAGCTGGGTTCGGGGTTTTCGTAATTGATGGAACCTCCACCTAGATTATATACTTACAAGGGTTTGTTCACTGAAAGTCGGTCACTGGACTTAACACTAAAAATTGTGTCGACTATACTGTCTTTTCTAGTCTTTTTATTCTTACTAGCTTGGCGTATTTCAAAAAAACATTATAATAATCCCCCGATAGACAAGCGTTTATGTTTTCACAGTTTCAACGATCTATGCCAAAATGGATCATTCCGCTTGACATCATTCTATGCATCTAGAAGACAAAAGTTTCCCCTGGTAAGGGGTTACTTAAATAAACAAAATGTCCTTTTTGTTGAAGATTGGAAATTAATCACTCTTTATGACCGATTTCCTCTGTTAGATCTACACTATTCCTCAGCTCCAAAATCATTCAGACGGAAATGGTGTGGCTTAATGATTGCTGATGATACTTTACAGTTTAGATCTGAATTGATTGAGCTGGTGTTGTTGGCCTTCAATAGTTTACCAATTAAGATATTCGAACGTATCGGCCATTTAGGAGCTGATCCTCAATTACTTGGCTCTATATTAGTTAGTACTAACAACTGTGCAAAATTTGAAAAACGTCTAGACATGTGGATA-TGTAGTGTGTATTCAGAAGTATTTTTTTTCGGTCCATCAGAAATTTTTTGCGAAACTGCTTCAGACAATACATTTTGTTTTGGAAGAGAAAAATTCATTTTAGATCTAAGAGAATGCATAATCTCACTGGAATCCTTACATATACATGGGAACTTTATAAAAAAGTCTGATGCATTTAAAGCAATCTTACAGCCATTTTCCGACAACCCATCATCTCATAATACGAATGAGTTAATAACCATGTTTCACAGTCTTATATATCCCTTAATTCATTATTATTTGGATAAATTTCTGAATAGTGAAATAAAAGAAAATATTAACA-AT-TCAGATGGTAATCTAGAATATTTACAAACAAGCGAGAAACCAACAAATCTATTATTACAACTCATTAATACATATCATTATTTGAAAGAGGAAGGAAGTTCCAATGAATTCCTAACATTAACACATATTATTCATTTACTTGGTGAATGTTGTTTATAACTAGGTATATAATGAATAAGACTTTAAAAACTCTATTGACAGTTCTAGCTATTAAACCAAAATGGGCAAGATATGTAAGAAAAAGATGTAAACAGTTTTTTAGAAGTCCA]
[+] EMBL CD080048 [ATAAAAAGCTGGGTTCGGGGTTTTCGTAATTGATGGAACCTCCACCTAGATTATATACTTACAAGGGTTTGTTCACTGAAAGTCGGTCACTGGACTTAACACTAAAAATTGTGTCGACTATACTGTCTTTTCTAGTCTTTTTATTCTTACTAGCTTGGCGTATTTCAAAAAAACATTATAATAATCCCCCGATAGACAAGCGTTTATGTTTTCACAGTTTCAACGATCTATGCCAAAATGGATCATTCCGCTTGACATCATTCTATGCATCTAGAAGACAAAAGTTTCCCCTGGTAAGGGGTTACTTAAATAAACAAAATGTCCTTTTTGTTGAAGATTGGAAATTAATCACTCTTTATGACCGATTTCCTCTGTTAGATCTACACTATTCCTCAGCTCCAAAATCATTCAGACGGAAATGGTGTGGCTTAATGATTGCTGATGATACTTTACAGTTTAGATCTGAATTGATTGAGCTGGTGTTGTTGGCCTTCAATAGTTTACCAATTAAGATATTCGAACGTATCGGCCATTTAGGAGCTGATCCTCAATTACTTGGCTCTATATTAGTTAGTACTAACAACTGTGCAAAATTTGAAAAACGTCTAGACATGTGGATANTGTAGTGTGTATTCAGAAGTATTTTTTTTCGGTCCATCAGA ]
[+] EMBL BF936787 [ CGGCCATTTACGAGCTGATCCTCAATTACTTGGCTCTATATTAGTTAGTACTAACAACTGTGCAAAATTTGAAAAACGTCTAGACATGTGGATA TGTAGTGTGTATTCAGAAGTATTTTTTTTCGGTCCATCAGAAATTTTTTGCGAAACTGCTTCAGACAATACATTTTGTTTTGGAAGAGAAAAATTCATTTTAGATCTAAGAGAATGCATAATCTCACTGGAATCCTTACATATACATGGGAACTTTATAAAAAAGTCTGATGCATTTAAAGCAATCTTACAGCCATTTTCCGACAACCCATCATCTCATAATACGAATGAGTTAATAACCATGTTTCACAGTCTTATATATCCCTTAATTCATTATTATTTGGATAAATTTCTGAATAGTGAAATAAAAGAAAATATTAACA AT TCAGATGGTAATCTAGAATATTTACAAACAAGCGAGAAACCAACAAATCTATTATTACAACTCATTAATACATATCATTATTTGAAAGAGGAAGGAAGTTCCAATGAATTCCTAACATTAACACATATTATTCATTTACTTGGTGAATGTTGTTTATAACTAGGTATATAATGAATAAGACTTTAAAAACTCTATTGACAGTTCTAGCTATTAAACCAAAATGGGCAAGATATGTAAGAAAAAGATGTAAACAGTTTTTTAGAAGTCCA]
[-] EMBL CD069405 [ gatataTCAATGA TTGGCTCTATATTAGTTAGTACTAACAACTGTGCAAAATTTGAAAAACGTCTAGACATGTGGATA TGTAGTGTGTATTCAGAAGTATTTTTTTTCGGTCCATCAGAAATTTTTTGCGAAACTGCTTCAGACAATACATTTTGTTTTGGAAGAGAAAAATTCATTTTAGATCTAAGAGAATGCATAATCTCACTGGAATCCTTACATATACATGGGAACTTTATAAAAAAGTCTGATGCATTTAAAGCAATCTTACAGCCATTTTCCGACAACCCATCATCTCATAATACGAATGAGTTAATAACCATGTTTCACAGTCTTATATATCCCTTAATTCATTATTATTTGGATAAATTTCTGAATAGTGAAATAAAAGAAAATATTAACACATGTCAGAT ]
consensusID : consensus_7544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 728 fasta sequence
[CTCCAGGCCAANAATTTGGCACGAGGCTGAATAGTGAAATAAAAGAAAATATTAACAATTCAGATGGTAATCTAGAATATTTACAAACAAGCGAGAAACCAACAAATCTATTATTACAACTCATTAATACATATCATTATTTGAAAGAGGAAGGAAGTTCCAATGAATTCCTAACATTAACACATATTATTCATTTACTTGGTGAATGTTGTTTAATAACTAGGTATATAATGAATAAGACTTTAAAAACTCTATTGACAGTTCTAGCTATTAAACCAAAATGGCAAGATAATGTAAGAAAAGAATGTAAACAGTTTTTAGAAGTCCAATATAATCATAAAACACAAAAGTCTACATCATTATGCAGCCATTCTATATCACATCTTTGCATGTCTTTGGAGCACACACAATGTTTGGTTTGGACAAAGGCTTTAATTCAAGAGACGCTGCGTTTATGTGTACCTGGTTGGCCATTTGGTTGTTTACGTCAAGCCCTCCGCGATGGGGAAATACTAAAGCAAGACTTTGCTGAAGGAGAACTAGTGCTTTTTGATGAGCCTTCCTACTACTCAGATCCAGATTTATGGTCTGCTGATGAGAATGGAGAAGGGTCTACCAAATATCAACCTCACAGAGTATTTGATCCAAGTCGCTTCATTGAAAAACTACCCACTGCAGGAAATTCGACAATGTTGGAGTTAAGTTTACCTGTACATTGGGCGCACATG]
[+] EMBL CD081147 [CTCCAGGCCAANAATTTGGCACGAGGCTGAATAGTGAAATAAAAGAAAATATTAACAATTCAGATGGTAATCTAGAATATTTACAAACAAGCGAGAAACCAACAAATCTATTATTACAACTCATTAATACATATCATTATTTGAAAGAGGAAGGAAGTTCCAATGAATTCCTAACATTAACACATATTATTCATTTACTTGGTGAATGTTGTTTAATAACTAGGTATATAATGAATAAGACTTTAAAAACTCTATTGACAGTTCTAGCTATTAAACCAAAATGGCAAGATAATGTAAGAAAAGAATGTAAACAGTTTTTAGAAGTCCAATATAATCATAAAACACAAAAGTCTACATCATTATGCAGCCATTCTATATCACATCTTTGCATGTCTTTGGAGCACACACAATGTTTGGTTTGGACAAAGGCTTTAATTCAAGAGACGCTGCGTTTATGTGTACCTGGTTGGCCATTTGGTTGTTTACGTCAAGCCCTCCGCGATGGGGAAATACTAAAGCAAGACTTTGCTGAAGGAGAACTAGTGCTTTTTGATGAGCCTTCCTACTACTCAGATCCAGATTTATGGTCTGCTGATGAGAATGGAGAAGGGTCTACCAAATATCAACCTCACAGAGTATTTGATCCAAGTCGCTTCATTGAAAAACTACCCACTGCAGGAAATTCGACAATGTTGGAGTTAAGTTTACCTGTACATTGGGCGCACATG]
[+] EMBL CD171493 [ TCTAGCTATTAAACCAAAATGGCAAGATAATGTAAGAAAAGAATGTAAACAGTTTTTAGAAGTCCAATATAATCATAAAACACAAAAGTCTACATCATTATGCAGCCATTCTATACCACATCTTTGCATGTCTTTGGAGCACACACAATGTTTGGTTTGGACAAAGGCTTTAATTCAAGAGACGCTGCGTTTATGTGTACCTGGTTGGCCATTTGGTTGTTTACGTCAAGCCCTCCGCGATGGGGAAATACTAAAGCAAGACTNTGCTGAAGGAGAACTAGTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7544#0 ATAAAAAGCTGGGTTCGGGGTTTTCGTAATTGATGGAACCTCCACCTAGATTATATACTT 60
consensus_7544#1 ------------------------------------------------------------
consensus_7544#0 ACAAGGGTTTGTTCACTGAAAGTCGGTCACTGGACTTAACACTAAAAATTGTGTCGACTA 120
consensus_7544#1 ------------------------------------------------------------
consensus_7544#0 TACTGTCTTTTCTAGTCTTTTTATTCTTACTAGCTTGGCGTATTTCAAAAAAACATTATA 180
consensus_7544#1 ------------------------------------------------------------
consensus_7544#0 ATAATCCCCCGATAGACAAGCGTTTATGTTTTCACAGTTTCAACGATCTATGCCAAAATG 240
consensus_7544#1 ------------------------------------------------------------
consensus_7544#0 GATCATTCCGCTTGACATCATTCTATGCATCTAGAAGACAAAAGTTTCCCCTGG---TAA 297
consensus_7544#1 ------------------------------CTCCAGGCCAANAATTTGGCACGAGGCTGA 30
** * * *** * *** * * * *
consensus_7544#0 GGGGTTACTTAAATAAACAAAATGTCCTTTTTGTTGAAGATTGGAAATTAATCACTCTTT 357
consensus_7544#1 ATAGTGAAATAAAAGAAAATATTAACAATTCAGATGGTAATCTAGAAT--ATTTACAAAC 88
** * **** ** * * * * ** * ** ** *** **
consensus_7544#0 ATGACCGATTTCCTCTGTTAGATCTACACTATTCCTCAGCTC-CAAAATCATTCAGACGG 416
consensus_7544#1 AAGCGAGAAACCAACAAATCTATTATTACAACTCATTAATACATATCATTATTTGAAAGA 148
* * ** * * * ** ** * ** * * * * ** *** * *
consensus_7544#0 AAATGGTGTGGCTTAATGATTGCTGATGATACTTTACAGTTTAGATCTGAATTGATTGAG 476
consensus_7544#1 GGAAGGAAGTTCCAATGAATTCCTAACATTAACACATATTATTCATTT-ACTTGGTGAA- 206
* ** * * *** ** * ** * * * * ** * * *** * *
consensus_7544#0 CTGGTGTTGTTGGCCTTCAATAGTTTACCAATTAAGATATTCGAA--CGTATCGGCCATT 534
consensus_7544#1 -TGTTGTT--TAATAACTAGGTATATAATGAATAAGACTTTAAAAACTCTATTGACAGTT 263
** **** * * * ** * ***** ** ** *** * * **
consensus_7544#0 -TAGGAGCTGATCCTCAATTACTTGGCTCTATATTAGTT-AGTACTAACAACTGTGCAAA 592
consensus_7544#1 CTAGCTATTAAACCAAAATGGCAAGATAATGTAAGAAAAGAATGTAAACAGTTTTTAGAA 323
*** * * ** *** * * * ** * * * **** * * **
consensus_7544#0 ATTTGAAA-AACGTCTAGACATGTGGATATGTAGTGTGTATTCAGAAGTATTTTTTTTCG 651
consensus_7544#1 GTCCAATATAATCATAAAACACAAAAGTCTACATCAT-TATGCAG--CCATTCTATATCA 380
* * * ** * *** * * * * *** *** *** * * **
consensus_7544#0 GTCCATCAGAAATTTTTTGCGAAACTGCTTCAGACAATACATTTTGTTTTGGAAGAGAAA 711
consensus_7544#1 CATCTTTGCATGTCTTTGGAGCA-------CACACAATG---TTTGGTTTGGACAAAGG- 429
* * * * *** * * * ** ***** **** ****** *
consensus_7544#0 AATTCATTTTAGATCTAAGAGAATGCATAATCTCACTGGAATCCTTACATATACATGGGA 771
consensus_7544#1 -------CTTTAATTCAAGAGA-CGCTGCGTTTATGTG---TACCTGGTTGGCCATTTGG 478
** ** ****** ** * * ** * * * * *** *
consensus_7544#0 ACTTTATAAAAAAGTCTGATGCATTTAAAGCAATCTTACAGCCATTTTCCGACAACCCAT 831
consensus_7544#1 TTGTTTACGTCAAGCCCTCCGCGAT-GGGGAAATACTAAAGCAAGACTTTGCTGAAGGAG 537
** *** * ** * * *** ** *** * * * * *
consensus_7544#0 CATCTCATAATACGAATGAGTTAATAACCATGTTTCACAGTCTTATATATCCCTTAATTC 891
consensus_7544#1 AACTAGTGCTTTTTGATGAGCC--TTCCTACTACTCAGATCCAGATTTATGGTCTG-CTG 594
* * ***** * * * *** * * ** *** * *
consensus_7544#0 ATTATTATTTGGATAAATTT-CTGAATAGTGAAATAAAAGAAAATATTAACAATTCAGAT 950
consensus_7544#1 ATGAGAATGGAGAAGGGTCTACCAAATATCAACCTCACAGAGTATTT----GATCCAAGT 650
** * ** ** * * * **** * * * *** ** * ** ** *
consensus_7544#0 GGTAATCTAGAATATTTACAAACAAGCGAGAAACCAACAAATCTATTATTACAACTCATT 1010
consensus_7544#1 CGCTTCATTGAAAAACTACCCACTGCAGGAAATTCGACAATGTTGGAGTTA-AGTTTACC 709
* * *** * *** ** * ** * **** * *** * * *
consensus_7544#0 AATACATATCAT-TATTTGAAAGAGGAAGGAAGTTCCAATGAATTCCTAACATTAACACA 1069
consensus_7544#1 TGTACATTGGGCGCACATG----------------------------------------- 728
***** * **
consensus_7544#0 TATTATTCATTTACTTGGTGAATGTTGTTTATAACTAGGTATATAATGAATAAGACTTTA 1129
consensus_7544#1 ------------------------------------------------------------
consensus_7544#0 AAAACTCTATTGACAGTTCTAGCTATTAAACCAAAATGGGCAAGATATGTAAGAAAAAGA 1189
consensus_7544#1 ------------------------------------------------------------
consensus_7544#0 TGTAAACAGTTTTTTAGAAGTCCA 1213
consensus_7544#1 ------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||