These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7545#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [TAATAGTAGTTTGGCGAAATCAGATACTGGGACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAGCCTTAATAGGCCAGGTGGATCAAGAACTTGGTACGATATTTCCAAATTGGTATTGAATGAATATGCTTTGCCATCAGGCTCAATAAATTTGACAGGTAAGCTAAACCATCTTGGAGGCTGCAATAGAGCGGAAGAAACAGAATTTTTTCGGTGTTTCGTTTGAGATACATTACTGGATGCATAAACATAGGTTATGTAATCTTTTTCCAGATCTGCGAATTCTGCTGGATAAAGGGCTATCCAGTCAAATGATGTAGTTTGTAAAGTTGGCGGAGCCAGTGGGCCTAAATCATCATCATTTGTGCTTCCTGATTTTCCCGACTTTGAAGAGTGTCCTGGTGTGTTCAATAATAGTAGTTTGGCGAAATCAGATACTGGGACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAG] [+] EMBL CD189037 [TAATAGTAGTTTGGCGAAATCAGATACTGGGACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAGCCTTAATAGGCCAGGTGGATCAAGAACTTGGTACGATATTTCCAAATTGGTATTGAATGAATATGCTTTGCCATCAGGCTCAATAAATTTGACAGGTAAGCTAAACCATCTTGGAGGCTGCAATAGAGCGGAAGAAACAGAATTTTTTCGGTGTTTCGTTTGAGATACATTACTGGATGCATAAACATAGGTTATGTAATCTTTTTCCAGATCTGCGAATTCTGCTGGATAAAGGGCTATCCAGTCAAATGATGTAGTTTGTAAAGTTGGCGGAGCCAGTGGGCCTAAATCATCATCATTTGTGCTTCCTGATTTTCCCGACTTTGAAGAGTGTCCTGGTGTGTTCAATAATAGTAGTTTGGCGAAATCAGATACTGGGACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAG] consensusID : consensus_7545#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 447 fasta sequence [TAATAGTAGTTTGGCGAAATCAGATACTGGGACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAGCCTTAATAGGCCAGGTGGATCAAGAACTTGGTACGATATTTCCAAATTGGTATTAAATGAATATGCTTTGCCATCAGGCTCAATAAATTTGACAGGTAAGCTAAACCATCTTGGAGGCACAGATAATTTGAATACTGCAATAACTGGCCGATGATCCGAAGTTTTGTATTCACTCAAACTAGTATACTTGAGTAAAACGGCCTCAGGGTGCTGTCTCCCTTTGATAGATTTGTTTGCTGGGAACTTTTCTTCCACTTCGGATGGTGACCCACGTACAGGTAATCGACGAGATGGGCTAGCTTGTCTCTGTCGGTTAGTTTCAGGAAGGTTAAGGTGGTGATCAAGAGCGAAATCTCGGTGAACCATATACAATAT] [+] EMBL CD189412 [TAATAGTAGTTTGGCGAAATCAGATACTGGGACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAGCCTTAATAGGCCAGGTGGATCAAGAACTTGGTACGATATTTCCAAATTGGTATTAAATGAATATGCTTTGCCATCAGGCTCAATAAATTTGACAGGTAAGCTAAACCATCTTGGAGGCACAGATAATTTGAATACTGCAATAACTGGCCGATGATCCGAAGTTTTGTATTCACTCAAACTAGTATACTTGAGTAAAACGGCCTCAGGGTGCTGTCTCCCTTTGATAGATTTGTTTGCTGGGAACTTTTCTTCCACTTCGGATGGTGACCCACGTACAGGTAATCGACGAGATGGGCTAGCTT ] [+] EMBL CD170742 [ ATAGTAGTTTGGCGAAATCAGATACTGGGACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAGCCTTAATAGGCCAGGTGGATCAAGAACTTGGTACGATATTTCCAAATTGGTATTGAATGAATATGCTTTGCCATCAGGCTCAATAAATTTGACAGGTAAGCTAAACCATCTTGGAGGCACAGATAATTTGAATACTGCAATAACTGGCCGATGATCCGAAGTTTTGTATTCATTCAAACTAGTATACTTGAGTAAAACGGCCTCAGGGTGCTGTCTCCCTTTGATAGATTTGTTTGCTGGGAACTTTTCTTCCACTTCGGATGGTGACCCACGTACAGGTAATCGACGAGATGGGCTAGCTTGTCTCTGTCGGTTAGTTTCAGGAAGGTTAAGGTGGTGATCAAGAGCGAAATCTCGGTGAACCATATACAATAT] [+] EMBL CD062794 [ GACGAGATGGGCTAGCTTGTCTCTGTCGGTCAGTTTCAGGGAGGTTAAGGTGGTGATCAAGAGCGAAATCTCGGTGACCCAT ] consensusID : consensus_7545#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [ATCTTTCAAGGTTTTATTGTCCGTTGATCAAACATTTTTTTCTATACGTTGAGTATACAATTAATCCTGTAATTTGAAAGGTAGACTATAACCCTGAGGACAATGCTTATTACGACTCATATAGACAAGACAAAATGATTGACCAGGTAAATCCTTTAATCGACTTGATTCAATTCTAGCCTTATAGAACTCTTGAAATTTCGCTTTATTTGGAGGCTGCAATAGAGCGGAAGAAACAGAATTTTTTCGGTGTTTCGTTTGAGATACATTACTGGATGCATAAACATAGGTTATGTAATCTTTTTCCAGATCTGCGAATTCTGCTGGATAAAGGGCTATCCAGTCAAATGATGTAGTTTGTAAAGTTGGCGGAGCCAGTGGGCCTAAATCATCATC] [-] EMBL CD086165 [ATCTTTCAAGGTTTTATTGTCCGTTGATCAAACATTTTTTTCTATACGTTGAGTATACAATTAATCCTGTAATTTGAAAGGTAGACTATAACCCTGAGGACAATGCTTATTACGACTCATATAGACAAGACAAAATGATTGACCAGGTAAATCCTTTAATCGACTTGATTCAATTCTAGCCTTATAGAACTCTTGAAATTTCGCTTTATTTGGAGGCTGCAATAGAGCGGAAGAAACAGAATTTTTTCGGTGTTTCGTTTGAGATACATTACTGGATGCATAAACATAGGTTATGTAATCTTTTTCCAGATCTGCGAATTCTGCTGGATAAAGGGCTATCCAGTCAAATGATGTAGTTTGTAAAGTTGGCGGAGCCAGTGGGCCTAAATCATCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7545#0 -----------------------------TAATAGTAGTTTGGCGAAATCAGATACTGGG 31 consensus_7545#2 ATCTTTCAAGGTTTTATTGTCCGTTGATCAAACATTTTTTTCTATACGTTGAGTA-TACA 59 consensus_7545#1 -----------------------------TAATAGTAGTTTGGCGAAATCAGATACTGGG 31 ** * * *** * * ** * consensus_7545#0 ACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAGCCTTAATAGGCCAGGTGGA 91 consensus_7545#2 ATTAATCCTGTAATTTGAAAGGTAGACTATAACCCTGAGGACAATGCTTATTACGACTCA 119 consensus_7545#1 ACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAGCCTTAATAGGCCAGGTGGA 91 * ** * * * ** ** * * **** * * * * * consensus_7545#0 TCAAGAACTTGGTACGATATTT--CCAAATTGGTA-TTGAATGAATATGCTTTGCCATCA 148 consensus_7545#2 T-ATAGACAAGACAAAATGATTGACCAGGTAAATCCTTTAATCGACTTGATTCAATTCTA 178 consensus_7545#1 TCAAGAACTTGGTACGATATTT--CCAAATTGGTA-TTAAATGAATATGCTTTGCCATCA 148 * * ** * * ** ** *** * * ** *** * ** ** * consensus_7545#0 GGCTCAATAAATTTGACAGGTAAGCTAAACCATCTTGGAGGCTGCAATAGAGCGGAAGAA 208 consensus_7545#2 GCCTTATAGAACT---CTTGAAATTTCGCTTTATTTGGAGGCTGCAATAGAGCGGAAGAA 235 consensus_7545#1 GGCTCAATAAATTTGACAGGTAAGCTAAACCATCTTGGAGGCACAGATAATTTGAATACT 208 * ** * ** * * * ** * ******** *** * * consensus_7545#0 ACAGAATTTTTTCGGTGTTTCG---TTTGAGATACATT---ACTGG-ATGCATAAACATA 261 consensus_7545#2 ACAGAATTTTTTCGGTGTTTCG---TTTGAGATACATT---ACTGG-ATGCATAAACATA 288 consensus_7545#1 GCAATAACTGGCCGATGATCCGAAGTTTTGTATTCACTCAAACTAGTATACTTGAGTAAA 268 ** * * ** ** * ** *** ** ** * *** * ** * * * * * consensus_7545#0 --GGTTATGTAATCTTTTTCCAGATCTGCGAATTC---TGCTGGATAAAGGGCTATCCAG 316 consensus_7545#2 --GGTTATGTAATCTTTTTCCAGATCTGCGAATTC---TGCTGGATAAAGGGCTATCCAG 343 consensus_7545#1 ACGGCCTCAGGGTGCTGTCTCCCTTTGATAGATTTGTTTGCTGGGAACTTTTCTTCCACT 328 ** * * * * * *** ****** * ** * consensus_7545#0 TCAAATGATGTAGTTTGTAAAGTTGGCGGAGCCAGTGGGCCTAAATCATCATCATTTGTG 376 consensus_7545#2 TCAAATGATGTAGTTTGTAAAGTTGGCGGAGCCAGTGGGCCTAAATCATCATC------- 396 consensus_7545#1 TCGGATGGTGACCCACGTACAGGTAATCGA-CGAGATGGGCTAGCTTGTCTCTGTCGGTT 387 ** *** ** *** ** * ** * ** ** *** * ** consensus_7545#0 CTTCCTGATTTTCCCGACTTTGAAGAGTGTCCTGGTGTGTTCAATAATAGTAGTTTGGCG 436 consensus_7545#2 ------------------------------------------------------------ consensus_7545#1 AGTTTCAGGAAGGTTAAGGTGGTGATCAAGAGCGAAATCTCGGTGAACCATATACAATAT 447 consensus_7545#0 AAATCAGATACTGGGACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAG 492 consensus_7545#2 -------------------------------------------------------- consensus_7545#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||