These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7560#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 955 fasta sequence [GAGGCCANATTCGGCACGAGGACATATCAAAAATGATATAAAAGTATTTCAACGTTCAAATGGATTCCTTATTCATGGTAGTTCAGGTGTGTTAAGTTATATGAATGCTTTGAAACATGTTCAATGGTTATGTAAAGATGAACAAAATAACATAAGTAGACGATGTTTTAATGTATCATGTGAAGCTATGATTCAAGTCTCTGAAAAGGATCAATTCATGATGAGAAAAGTGAATAGCAATGCCATACAATCTGAATTTTATATTTATCATGGAAAATCATCACAGCCATCAGTTACTCCATCAAATGTACAACAGCATTCAACAAGATTATCTTTGAGAGGAAAACCTCGTCTGGTAAATAAAAGGGATATAAATAGTCTTCAGCCAGCTATGCATTTACAAAATAAAACAAACACTTGGAG-TA-CGGGTATTTTGCTACTTATCAGCTCTTCTGTTTTGGCAGTTCTACTAATACTGTTTGTTGCTATCAAACGAATTCACCGTGTTCATTTAAAATCTAATCATTTTGAATTACAAGCTCAAAATCTTCAAATGACACCATTTGATATCAATGCATTAAAACAACAAATGAATGAATATCAGGATGGAAGAAAGTCAGAAACTAGTGCTGAAAAATTAAGAAATTCAAGATCGAACGACTGCAATTCTCAAACGATAATAAATCATCATCAAC-ACATGAGAATGAACAAAAAAAACAACCATTACGAATTACCCCGAATCCATTTGTCAATCAATCCGATATGAAAGAATACGAAGCAAAAACTATTTTGTTGGATGAAAAACGTTATGATGCCACTTTGAATATGTCATCATCAATATATAATAATAATAATAATAAAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGCCATGCAGCTGCATTACCGTACTGCGTA] [+] EMBL CD080768 [GAGGCCANATTCGGCACGAGGACATATCAAAAATGATATAAAAGTATTTCAACGTTCAAATGGATTCCTTATTCATGGTAGTTCAGGTGTGTTAAGTTATATGAATGCTTTGAAACATGTTCAATGGTTATGTAAAGATGAACAAAATAACATAAGTAGACGATGTTTTAATGTATCATGTGAAGCTATGATTCAAGTCTCTGAAAAGGATCAATTCATGATGAGAAAAGTGAATAGCAATGCCATACAATCTGAATTTTATATTTATCATGGAAAATCATCACAGCCATCAGTTACTCCATCAAATGTACAACAGCATTCAACAAGATTATCTTTGAGAGGAAAACCTCGTCTGGTAAATAAAAGGGATATAAATAGTCTTCAGCCAGCTATGCATTTACAAAATAAAACAAACACTTGGAG TA CGGGTATTTTGCTACTTATCAGCTCTTCTGTTTTGGCAGTTCTACTAATACTGTTTGTTGCTATCAAACGAATTCACCGTGTTCATTTAAAATCTAATCATTTTGAATTACAAGCTCAAAATCTTCAAATGACACCATTTGATATCAATGCATTAAAACAACAAATGAATGAATATCAGGATGGAAGAAAGTCAGAAACTAGTGCTGAAAAATTAAGAAATTCAAGATCGAACGACTGGCATTCTCAAACGATAATAAATCATCATCAAC ACATGAGAATGAA ] [+] EMBL CD096431 [ TATGAATGCTTTGAAACATGTTCAGTGGTTATGTAAAGATGAACAAAATAACATAAGTAGACGATGTTTTAATGTATCATGTGAAGCTATGATTCAAGTCTCTGAAAAGGATCAATTCATGATGAGAAAAGTGAATAGCAATGCCATACAATCTGAATTTTATATTTATCATGGAAAATCATCACAGCCATCAGTTACTCCATCAAATGTACAACAGCATTCAACAAGATTATCTTTGAGAGGAAAACCTCGTCTGGTAAATAAAAGGGATATAAACAGTCTTCAGCCAGCTATGCATTTACAAAATAAAACAAACACTTGGAG TA CGGGTATTTTGCTACTTATCAGCTCTTCTGTTTTGGCAGTTCTACTAATACTGTTTGTTGCTATCAAACGAATTCACCGTGTTCATTTAAAATCTAATCATTTTGAATTACAAGCTCAAAATCTTCAAATGACACCATTTGATATCAATGCATTAAAACAACAAATGAATGAATATCAGGATGGAAGAAAGTCAGAAACTAGTGCTG AAAATTAAGAAATTCAAGATCGAACGACTGCAATTCTCAGACGATANTANATCATCATC ] [-] EMBL CD069611 [ CGATGTTTTAATGTATCATGTGAAGCTATGATTCAAGTCTCTGAAAAGGACCAATTCATGATGAGAAAAGTGAATAGCAATGCCATACAATCTGAATTTTATATTTATCATGGAAAATCATCACAGCCATCAGTTACTCCATCAAATGTACAACAGCATTCAACAAGATTATCTTTGAGAGGAAAACCTCGTCTGGTAAATAAAAGGGATATAAATAGTCTTCAGCCAGCTATGCATTTACAAAATAAAACAAACACTTGGAGCTACCGGGT ] [-] EMBL AI067765 [ GCTGAAAAATTAAGAAATTCAAGATCGAACGACTGCAATTCTCAAACGATAATAAATCATCATCAACAACATGAGAATGAACAAAAAAAACAACCATTACGAATTACCCCGAATCCATTTGTCAATCAATCCGATATGAAAGAATACGAAGCAAAAACTATTTTGTTGGATGAAAAACGTTATGATGCCACTTTGAATATGTCATCATCAATATATAATAATAATAATAATAAAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGCCATGCAGCTGCATTACCGTACTGCGTA] consensusID : consensus_7560#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [GGAATTCCCCGTGTTCATTTAAAATCTAATCATTTTGAATTACAAGGTCAAAATGTTCAAATGACCCCATTTGATATCAATGCATTAAAACAACAAATGAATGGATATCAGGGTGGAAGAAAGTCAGAAACTAGTGTTGAAAAATTAAGAAATTCAAGATCGAAGGGCTGCAATTTTCAAAGGGTAATAAATCATCATCAACAACATGGGAATGGACAAAAAAAACAACCATTAGGAATTACCCCGAAACCATTTGTCAATCAAACCGATTTGAAAGAATACGAAGCAAAAAATATTTTGTTGGGTGAAAAACGTTTTGATTCCACTTTGAAAATGTCATCA] [-] EMBL AI067896 [GGAATTCCCCGTGTTCATTTAAAATCTAATCATTTTGAATTACAAGGTCAAAATGTTCAAATGACCCCATTTGATATCAATGCATTAAAACAACAAATGAATGGATATCAGGGTGGAAGAAAGTCAGAAACTAGTGTTGAAAAATTAAGAAATTCAAGATCGAAGGGCTGCAATTTTCAAAGGGTAATAAATCATCATCAACAACATGGGAATGGACAAAAAAAACAACCATTAGGAATTACCCCGAAACCATTTGTCAATCAAACCGATTTGAAAGAATACGAAGCAAAAAATATTTTGTTGGGTGAAAAACGTTTTGATTCCACTTTGAAAATGTCATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7560#0 GAGGCCANATTCGGCACGAGGACATATCAAAAATGATATAAAAGTATTTCAACGTTCAAA 60 consensus_7560#1 ------------------------------------------------------------ consensus_7560#0 TGGATTCCTTATTCATGGTAGTTCAGGTGTGTTAAGTTATATGAATGCTTTGAAACATGT 120 consensus_7560#1 ------------------------------------------------------------ consensus_7560#0 TCAATGGTTATGTAAAGATGAACAAAATAACATAAGTAGACGATGTTTTAATGTATCATG 180 consensus_7560#1 ------------------------------------------------------------ consensus_7560#0 TGAAGCTATGATTCAAGTCTCTGAAAAGGATCAATTCATGATGAGAAAAGTGAATAGCAA 240 consensus_7560#1 ------------------------------------------------------------ consensus_7560#0 TGCCATACAATCTGAATTTTATATTTATCATGGAAAATCATCACAGCCATCAGTTACTCC 300 consensus_7560#1 ------------------------------------------------------------ consensus_7560#0 ATCAAATGTACAACAGCATTCAACAAGATTATCTTTGAGAGGAAAACCTCGTCTGGTAAA 360 consensus_7560#1 ------------------------------------------------------------ consensus_7560#0 TAAAAGGGATATAAATAGTCTTCAGCCAGCTATGCATTTACAAAATAAAACAAACACTTG 420 consensus_7560#1 ------------------------------------------------------------ consensus_7560#0 GAGTACGGGTATTTTGCTACTTATCAGCTCTTCTGTTTTGGCAGTTCTACTAATACTGTT 480 consensus_7560#1 ------------------------------------------------------------ consensus_7560#0 TGTTGCTATCAAACGAATTCACCGTGTTCATTTAAAATCTAATCATTTTGAATTACAAGC 540 consensus_7560#1 -------------GGAATTCCCCGTGTTCATTTAAAATCTAATCATTTTGAATTACAAGG 47 ****** ************************************** consensus_7560#0 TCAAAATCTTCAAATGACACCATTTGATATCAATGCATTAAAACAACAAATGAATGAATA 600 consensus_7560#1 TCAAAATGTTCAAATGACCCCATTTGATATCAATGCATTAAAACAACAAATGAATGGATA 107 ******* ********** ************************************* *** consensus_7560#0 TCAGGATGGAAGAAAGTCAGAAACTAGTGCTGAAAAATTAAGAAATTCAAGATCGAACGA 660 consensus_7560#1 TCAGGGTGGAAGAAAGTCAGAAACTAGTGTTGAAAAATTAAGAAATTCAAGATCGAAGGG 167 ***** *********************** *************************** * consensus_7560#0 CTGCAATTCTCAAACGATAATAAATCATCATCAACA-CATGAGAATGAACAAAAAAAACA 719 consensus_7560#1 CTGCAATTTTCAAAGGGTAATAAATCATCATCAACAACATGGGAATGGACAAAAAAAACA 227 ******** ***** * ******************* **** ***** ************ consensus_7560#0 ACCATTACGAATTACCCCGAATCCATTTGTCAATCAATCCGATATGAAAGAATACGAAGC 779 consensus_7560#1 ACCATTAGGAATTACCCCGAAACCATTTGTCAATCAAACCGATTTGAAAGAATACGAAGC 287 ******* ************* *************** ***** **************** consensus_7560#0 AAAAACTATTTTGTTGGATGAAAAACGTTATGATGCCACTTTGAATATGTCATCATCAAT 839 consensus_7560#1 AAAAAATATTTTGTTGGGTGAAAAACGTTTTGATTCCACTTTGAAAATGTCATCA----- 342 ***** *********** *********** **** ********** ********* consensus_7560#0 ATATAATAATAATAATAATAAAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 899 consensus_7560#1 ------------------------------------------------------------ consensus_7560#0 AAAAAAAAAAAAAAAAAAAAAAAAACAGCCATGCAGCTGCATTACCGTACTGCGTA 955 consensus_7560#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||