These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7567#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 752 fasta sequence [CGTTCTAATATTGATGGAAAACGTGGAGTTACGAATTACTGATAAAAGTAAATACCGGCCAGCTAATTAACTGCCAAATAGAATATGTACTGGATGCTCATTTAAAGCCCGATGAGGCAGAGGAAGGAGAGGTCAACGATTTGTCTGACCGAGAAGATAATGTCTCAGACTTTTCGAGTAAAAGCGGTTCATCAAAGTCTTATAACAACTCGTCACCAAAGCACGGAGATGAGAGCTGTACGTCAGAAATGTCACACAACGGGGGATCTTCACTTTCTACGCTAAATAAACCATCAATACGTCATATCCGGGTCCATAAAAGTAAACCTGTTAAAATAACGGAGACCACTGTTGTGTCAAAGGAAAGTAATACAAGTCCTGTTTATACCAAATCAGACGTTCGTGGTCAAATTTCGTCTCATGAAAACCAAACAACCAAGTTACAGTCTGTAGTCAATTGTGCTAGGGCTTCAGGTAAGAATATATATCACTCAAAATATTCTTTAGATCCACAAATGTCGGAGCAGGTTGAAACATTTCATACCTCAATGTTTGCTAAATCAACTAAACATCTTCAGGGTCTACGGGACTTAGAAAAGGTGCAGCTTCAGATGCAACTAGAGGTTGTAACTAATCAAGTAAACTAATATCATTTCGAATGTTTCGTGTAATGATTTACATCTAGGCTTTACATACGATAGTCTTATCTGTTTAATTTATCGCATTGCACTTATAGTGTCTTCACCCCCTGA] [+] EMBL CD110936 [CGTTCTAATATTGATGGAAAACGTGGAGTTACGAATTACTGATAAAAGTAAATACCGGCCAGCTAATTAACTGCCAAATAGAATATGTACTGGATGCTCATTTAAAGCCCGATGAGGCAGAGGAAGGAGAGGTCAACGATTTGTCTGACCGAGAAGATAATGTCTCAGACTTTTCGAGTAAAAGCGGTTCATCAAAGTCTTATAACAACTCGTCACCAAAGCACGGAGATGAGAGCTGTACGTCAGAAATGTCACACAACGGGGGATCTTCACTTTCTACGCTAAATAAACCATCAATACGTCATATCCGGGTCCATAAAAGTAAACCTGTTAAAATAACGGAGACCACTGTTGTGTCAAAGGAAAGTAATACAAGTCCTGTTTATACCAAATCAGACGTTCGTGGTCAAATTTCGTCTCATGAA ] [-] EMBL CD091430 [ AAAGCACGGAGATGAGAGCTGTACGTCAGAAATGTCACACAACGGGGGATCTTCACTTTCTACGCTAAATAAACCATCAATACGTCATATCCGGGTCCATAAAAGTAAACCTGTTAAAATAACGGAGACCACTGTTGTGTCAAAGGAAAGTAATACAAGTCCTGTTTATACCAAATCAGACGTTCGTGGTCAAATTTCGTCTCATGAAAACCAAACAACCAAGTTACAGTCTGTAGTCAATTGTGCTAGGGCTTCAGGTAAGAATATATATCACTCAAAATATTCTTTAGATCCACAAATGTCGGAGCAGGTTGAAACATTTCATACCTCAATGTTTGCTAAATCAACTAAACATCTTCAGGGTCTACGGGACTTAGAAAAGGTGCAGCTTCAGATGCAACTAGAGGTTGTAACTAATCAAGTAAACTAATATCATTTCGAATGTTTCGTGTAATGATTTACATCTAGGCTTTACATACGATAGTCTTATCTGTTTAATTTATCGCATTGCACTTATAGTGTCTTCACCCCCTGA] consensusID : consensus_7567#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 673 fasta sequence [CTTTCTAATATTGATGGAAAACGTGGAGTTACGAATTACTGATAAAAAATATGTACTGGATGCTCATTTAAAGCCCGATGAGGCAGAGGAAGGAGAGGTCAACGATTTGTCTGACCAAGAAGATAATGTCTCAGACTTTTCGAGTAATAGCGGTTCATCAAAGTCTTATAACAACTCGTCACCAAAGCACGGAGATGAGAGCTGTACGTCAGAAATGTCACACAACGGGGGATCTTCACTTTCTACGCTAAATAAACCATCAATACGTCATATCCGGGTCCATAAAAGTAAACCTGTTAAAATAACGGAGACCACTGTTGTGTCAAAGGAAAATAATACAAGTCCTGTTTATACCAAATCAGACGTTCGTGGTCAAATTTCGTCTCATGAAAACCAAACAACCAAGTTACAGTCTGTAGTCAATTGTGCTAGGGCTTCAGATCCACAAATGTCGGAGCAGGTTGAAACATTTCATACCTCAATGTATGCTAAATCAACTAAACATCTTCAGGGTCTACGGGACTTAG-AAAGGTGCAGCTTCAGATGCAACTAGAGGTTGTAACTAATCAAAATGAACATAGTCATACTCCTACTCCCTATCCCAGTTTCTCTCAAAGTGTACATGCAGAGTGTGTTTGCCTGGTTTNTGTTACCTGGTGGACGAGAACGGTAC] [+] EMBL CD148676 [CTTTCTAATATTGATGGAAAACGTGGAGTTACGAATTACTGATAAAAAATATGTACTGGATGCTCATTTAAAGCCCGATGAGGCAGAGGAAGGAGAGGTCAACGATTTGTCTGACCAAGAAGATAATGTCTCAGACTTTTCGAGTAATAGCGGTTCATCAAAGTCTTATAACAACTCGTCACCAAAGCACGGAGATGAGAGCTGTACGTCAGAAATGTCACACAACGGGGGATCTTCACTTTCTACGCTAGATAAACCATCAATACGTCATATCCGGGTCCATAAAAGTAAACCTGTTAAAATAACGGAGACCACTGTTGTGTCAAAGGAAAGTAATACAAGTCCTGTTTATACCAAATCAGACGTTCGTGGTCAAATTTCGTCTCATGAAAACCAAACAACCAAGTTACAGTCTGTAGTCAATTGTGCTAGGGCTTCAGATCCACAAATGTCGGAGCAGGTTGAAACATTTCATACCTCAATGTTTGCTAAATCAACTAAACATCTTCAGGGTCTACGGGACTTAG AAAGGTGCAGCTTCAGATGCAACTAGAGGTTGTAACT ] [-] EMBL CD124261 [ TTTCTAATACTGATGGANAACGTGGAGTTACGAATTACTGATACAAGATATGTACTGGATGCTCATTTAGAGCCCGATGAGGCAGAGGAAGGAGAGGTCAACGATTTGTCTGACCAAGAAGATAATGTCTCAGACTNTTCGAGTAATAGCGGTTCATCANAGTCTTATAACAACTCGTCACCAAAGCACGGAGATGGGAGCTGTACGTCAGAAATGTCACACAACGGGGGATCTTCACTTTCTACGCTAAATAAACCATCAATACGTCATATCCGGGTCCATAAAAGTAAACCTGTTAAAATAACGGAGACCACTGTTGCGTCAAAGGAAAATAATACAAGTCCTGTTTATACCAAATCAGACGTTCGTGGTCAAATTTCGTCTCATGAAAACCAAACAACCAAGTTACAGTCTGTAGTCAATTGTGCTAGGGCTTCAGATCCACAAATGTCGGAGCAGGTTGAAACATTTCATACCTCAATGTATGtggaccagc ] [-] EMBL CD124327 [ CGAATTACTGATAAANAATATGTACTGGATGCTCATTTAAAGCCCGATGAGGCAGAGGAAGGAGAGGTCAACGATTTGTCTGACCAAGAAGATAATGTCTCAGACTTTTCGAGTAATAGCGGTTCATCAAAGTCTTATAACAACTCGTCACCAAAGCACGGAGATGAGAGCTGTACGTCAGAAATGTCACACAACGGGGGATCTTCACTTTCTACGCTAAATAATCCATCAATACGTCATATCCGGGTCCATAAAAGTAAACCTGTTAAAATAACGGAGACCACTGTTGTGTCAAAGGAAAATAATACAAGTCCTGTTTATACCAAATCAGACGTTCGTGGTCAAATTTCGTCTCATGAAAACCAAACAACCAAGTTACAGTCTGTAGTCAATTGTGCTAGGGCTTCAGATCCACAAATGTCGGAGCAGGTTGGAACATTTCATACCTCAATGTCTGCTAAATCAACTAAACATCTTCAGGGTCTACGGGACTTAGAAAAGGTGCAGCTTCAGATGCAACTAGAGGTTGTAACTAATCAAAATGAACATAGTCATACTCCTACTCCCTATCCCAGTTTCTCTCAAAGTGTACATGCAGAGTGTGTTTGCCTGGTTTNTGTTACCTGGTGGACGAGAACGGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7567#0 CGTTCTAATATTGATGGAAAACGTGGAGTTACGAATTACTGATAAAAGTAAATACCGGCC 60 consensus_7567#1 CTTTCTAATATTGATGGAAAACGTGGAGTTACGAATTACTGATAAAA------------- 47 * ********************************************* consensus_7567#0 AGCTAATTAACTGCCAAATAGAATATGTACTGGATGCTCATTTAAAGCCCGATGAGGCAG 120 consensus_7567#1 ---------------------AATATGTACTGGATGCTCATTTAAAGCCCGATGAGGCAG 86 *************************************** consensus_7567#0 AGGAAGGAGAGGTCAACGATTTGTCTGACCGAGAAGATAATGTCTCAGACTTTTCGAGTA 180 consensus_7567#1 AGGAAGGAGAGGTCAACGATTTGTCTGACCAAGAAGATAATGTCTCAGACTTTTCGAGTA 146 ****************************** ***************************** consensus_7567#0 AAAGCGGTTCATCAAAGTCTTATAACAACTCGTCACCAAAGCACGGAGATGAGAGCTGTA 240 consensus_7567#1 ATAGCGGTTCATCAAAGTCTTATAACAACTCGTCACCAAAGCACGGAGATGAGAGCTGTA 206 * ********************************************************** consensus_7567#0 CGTCAGAAATGTCACACAACGGGGGATCTTCACTTTCTACGCTAAATAAACCATCAATAC 300 consensus_7567#1 CGTCAGAAATGTCACACAACGGGGGATCTTCACTTTCTACGCTAAATAAACCATCAATAC 266 ************************************************************ consensus_7567#0 GTCATATCCGGGTCCATAAAAGTAAACCTGTTAAAATAACGGAGACCACTGTTGTGTCAA 360 consensus_7567#1 GTCATATCCGGGTCCATAAAAGTAAACCTGTTAAAATAACGGAGACCACTGTTGTGTCAA 326 ************************************************************ consensus_7567#0 AGGAAAGTAATACAAGTCCTGTTTATACCAAATCAGACGTTCGTGGTCAAATTTCGTCTC 420 consensus_7567#1 AGGAAAATAATACAAGTCCTGTTTATACCAAATCAGACGTTCGTGGTCAAATTTCGTCTC 386 ****** ***************************************************** consensus_7567#0 ATGAAAACCAAACAACCAAGTTACAGTCTGTAGTCAATTGTGCTAGGGCTTCAGGTAAGA 480 consensus_7567#1 ATGAAAACCAAACAACCAAGTTACAGTCTGTAGTCAATTGTGCTAGGGCTTCAG------ 440 ****************************************************** consensus_7567#0 ATATATATCACTCAAAATATTCTTTAGATCCACAAATGTCGGAGCAGGTTGAAACATTTC 540 consensus_7567#1 ---------------------------ATCCACAAATGTCGGAGCAGGTTGAAACATTTC 473 ********************************* consensus_7567#0 ATACCTCAATGTTTGCTAAATCAACTAAACATCTTCAGGGTCTACGGGACTTAGAAAAGG 600 consensus_7567#1 ATACCTCAATGTATGCTAAATCAACTAAACATCTTCAGGGTCTACGGGACTTAGAAA-GG 532 ************ ******************************************** ** consensus_7567#0 TGCAGCTTCAGATGCAACTAGAGGTTGTAACTAATCAAGTAAACTAATATCATTTCGAAT 660 consensus_7567#1 TGCAGCTTCAGATGCAACTAGAGGTTGTAACTAATCAAAATGAACATAGTCATACTCC-T 591 ************************************** * * **** * consensus_7567#0 GTTTCGTGTAATGATTTACATCTAGGCTTTACATACGATAGTCTTATCTGTTTAATTTAT 720 consensus_7567#1 ACTCCCTATCCCAGTTTCTCTCAAAG-TGTACATGC-AGAGTGT-GTTTGCCTGGTTTNT 648 * * * * *** ** * * * ***** * * *** * * ** * *** * consensus_7567#0 CGCATTGCACTTATAGTGTCTTCACCCCCTGA 752 consensus_7567#1 GTTACCTGGTGGACGAGAACGGTAC------- 673 * * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||