These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7568#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 999 fasta sequence [TATTGAGCTATAAGGGCACCAAAACCTTTAAAAAGACCCAGGATTCCAACAGGCGACCCCAAGCTAGAGCGAAGTGCATCAAAAAATCCGTCATATGAAGAAACAATGGGAACAACTACATCACCCGTATCCATATTATCAACCAGAGTACGAGTGCCTTGTACACACAACCGTAGTACTAGGGTTTCTACTGGATAAAGTACAACATCTGCGACAAAATTAGCTGTCATCCCAGCGAACAAATCGGCATAATAACGATCATAAATCGCCTGTAAAGCGGTGTCCTGACGTTGGTAAATTANAGTATCCATATCTGTTGTATGACGCTCACTAACAGATGTATGTGCGTTTGGTATTGCATAATGAATAGCAAATCCAGAACACCTATTCCGATTATAGCCTTCAGTGTTATAATTAAAAACCATTTCCGCATCTCGTTCAAGACGATCCTCATTACCACTCCAGTAATACAAAGCTACAGTGCTTGCAAACGATCGAACAACATAATGACCGACATTAAGTAAAACAACAGGAGGAAAGAGACGCCAAACAGGCAGCAAACGTGACGTCGCGATCGGAATGCTCCTGATAGTATGACCACTGCGAAACATTGAACCTGGTGAGCCTAATCTTGGGGATGACGGCATGTGAAATAAGCGGTAAAAACCATGGAGTACACAAGAAAGAAGGGTGAAAGGGGTTAAATGAAGACATTGACTTGATTCCAAAACTTGACACTGGTTCCTTATTACAATGAAAGGATGTGATAATAAAACCTCTAAGAACATGCTGGCAACCCCAATACCTATTCCAGCTAAGGCTGGACTTAAGTCATTATCGGCAACACCTGGCTTTACATCCACAGATTCCTGACAATTTTCCACTGGTCCCTCATTCAAAAATGCATTGGACACAGACCCATCTTGTACTAATTTATTTTCTAGATATTTTAGACGCTCAGAGTACATCCGTATGGGTAACGCAGTACTTGAAACGTTG] [+] EMBL CD198248 [TATTGAGCTATAAGGGCACCAAAACCTTTAAAAAGACCCAGGATTCCAACAGGCGACCCCAAGCTAGAGCGAAGTGCATCAAAAAATCCGTCATATGAAGAAACAATGGGAACAACTACATCACCCGTATCCATATTATCAACCAGAGTACGAGTGCCTTGTACACACAACCGTAGTACTAGGGTTTCTACTGGATAAAGTACAACATCTGCGACAAAATTAGCTGTCATCCCAGCGAACAAATCGGCATAATAACGATCATAAATCGCCTGTAAAGCGGTGTCCTGACGTTGGTAAATTANAGTATCCATATCTGTTGTATGACGCTCACTAACAGATGTATGTGCGT ] [-] EMBL AI977418 [ CCATATCTGTTGTATGACGCTCACTAACAGATGTATGTGCGTTTGGTATTGCATAATGAATAGCAAATCCAGAACACCTATTCCGATTATAGCCTTCAGTGTTATAATTAAAAACCATTTCCGCATCTCGTTCAAGACGATCCTCATTACCACTCCAGTAATACAAAGCTACAGTGCTTGCAAACGATCGAACAACATAATGACCGACATTAAGTAAAACAACAGGAGGAAAGAGACGCCAAACAGGCAGCAAACGTGACGTCGCGATCGGAATGCTCCTGATAGTATGACCACTGCGAAACATTGAACCTGGTGAGCCTAATCTTGGGGATGACGGCATGTGAAATAAGCGGTAAAAACCATGGAGTACACAAGAAAGAA ] [+] EMBL CD188926 [ CACTGCGAAACATTGAACCTGGTGAGCCTAATCTTGGGGATGACGGCATGTGAAATAAGCGGTAAAAACCATCGAGTACACAAGAAAGAAGGGTGAAAGGGGTTAAATGAAGACATTGACTTGATTCCAAAACTTGACACTGGTTCCTTATTACAATGAAAGGATGTGATAATAAAACCTCTAAGAACATGCTGGCAACCCCAATACCTATTCCAGCTAAGGCTGGACTTAAGTCATTATCGGCAACACCTGGCTTTACATCCACAGATTCCTGACAATTTTCCACTGGTCCCTCATTCAAAAATGCATTGGACACAGACCCATCTTGTACTAATTTATTTTCTAGATATTTTAGACGCTCAGAGTACATCCGTATGGGTAACGCAGTACTTGAAACGTTG] consensusID : consensus_7568#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 365 fasta sequence [CTTCCGAACAACAGGTATGAGGGTGAAAGGGGTTAAATGAAGACATTGACTTGATTCCAAAACTTGACTCTGGTTCCTTATTACAATGAAAGGATGTGATAATAAAACCTCTAAGAACATGCTAAAATATGTTAAGTAAACTCGCTTAAAGAAACCTGGCAACCCCAATACCTATTCCAGCTAAGGCTGGA-------CATTATCGGCAACACCTGGCTTTACATCCACAGATTCCTGACAATTTTCCACTGGTCCCTCATTCAAAAATGCATTGGACACAGACCCATCTTGTACTAATTTATTTTCTAGATATTTTAGACGCTCAGAGTACATCCGTATGGGTAACGCAGTACTTGAAACGTTGGCCTTGT] [-] EMBL CD185840 [CTTCCGAACAACAGGTATGAGGGTGAAAGGGGTTAAATGAAGACATTGACTTGATTCCAAAACTTGACTCTGGTTCCTTATTACAATGAAAGGATGTGATAATAAAACCTCTAAGAACATGCTAAAATATGTTAAGTAAACTCGCTTAAAGAAACCTGGCAACCCCAATACCTATTCCAGCTAAGGCTGGA CATTATCGGCAACACCTGGCTTTACATCCACAGATTCCTGACAATTTTCCACTGGTCCCTCATTCAAAAATGCATTGGACACAGACCCATCTTGTACTAATTTATTTTCTAGATATTTTAGACGCTCAGAGTACATCCGTATGGGTAACGCAGTACTTGAAACGTTGGCCTTG ] [-] EMBL CD133494 [ GAAGACAATGACTTGATTACAAAACTTGACACTGGTTCCTTATTCCAATGAAAGGATGTGATAATAAAACCTCTAAGAACATGCTAAAATATGTTAAGTAAACTCGCTTAAAGTAACCTGGCAACCCCAATACCTATTCCAGCTAAGGCTGGACTTAAGTCATTATCGGCAACACCTGGCTTTACATCCACAGATTCCTGACAATTTTCCACTGGTCCCTCATTCAAAAATGCATTGGACACAGACCCATCTTGTACTAATTTATTTTCTAGATATTTTAGACGCTCAGAGTACATCCGTATGGGTAACGCAGTACTTGAAACGTTGGCCTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7568#0 TATTGAGCTATAAGGGCACCAAAACCTTTAAAAAGACCCAGGATTCCAACAGGCGACCCC 60 consensus_7568#1 ------------------------------------------------------------ consensus_7568#0 AAGCTAGAGCGAAGTGCATCAAAAAATCCGTCATATGAAGAAACAATGGGAACAACTACA 120 consensus_7568#1 ------------------------------------------------------------ consensus_7568#0 TCACCCGTATCCATATTATCAACCAGAGTACGAGTGCCTTGTACACACAACCGTAGTACT 180 consensus_7568#1 ------------------------------------------------------------ consensus_7568#0 AGGGTTTCTACTGGATAAAGTACAACATCTGCGACAAAATTAGCTGTCATCCCAGCGAAC 240 consensus_7568#1 ------------------------------------------------------------ consensus_7568#0 AAATCGGCATAATAACGATCATAAATCGCCTGTAAAGCGGTGTCCTGACGTTGGTAAATT 300 consensus_7568#1 ------------------------------------------------------------ consensus_7568#0 ANAGTATCCATATCTGTTGTATGACGCTCACTAACAGATGTATGTGCGTTTGGTATTGCA 360 consensus_7568#1 ------------------------------------------------------------ consensus_7568#0 TAATGAATAGCAAATCCAGAACACCTATTCCGATTATAGCCTTCAGTGTTATAATTAAAA 420 consensus_7568#1 ------------------------------------------------------------ consensus_7568#0 ACCATTTCCGCATCTCGTTCAAGACGATCCTCATTACCACTCCAGTAATACAAAGCTACA 480 consensus_7568#1 ------------------------------------------------------------ consensus_7568#0 GTGCTTGCAAACGATCGAACAACATAATGACCGACATTAAGTAAAACAACAGGAGGAAAG 540 consensus_7568#1 ------------------------------------------------------------ consensus_7568#0 AGACGCCAAACAGGCAGCAAACGTGACGTCGCGATCGGAATGCTCCTGATAGTATGACCA 600 consensus_7568#1 ------------------------------------------------------------ consensus_7568#0 CTGCGAAACATTGAACCTGGTGAGCCTAATCTTGGGGATGACGGCATGTGAAATAAGCGG 660 consensus_7568#1 ------------------------------------------------------------ consensus_7568#0 TAAAAACCATGGAGTACACAAGAAAGAAGGGTGAAAGGGGTTAAATGAAGACATTGACTT 720 consensus_7568#1 --------CTTCCGAACAACAGGTATGAGGGTGAAAGGGGTTAAATGAAGACATTGACTT 52 * * *** ** * ********************************* consensus_7568#0 GATTCCAAAACTTGACACTGGTTCCTTATTACAATGAAAGGATGTGATAATAAAACCTCT 780 consensus_7568#1 GATTCCAAAACTTGACTCTGGTTCCTTATTACAATGAAAGGATGTGATAATAAAACCTCT 112 **************** ******************************************* consensus_7568#0 AAGAACATGCT----------------------------------GGCAACCCCAATACC 806 consensus_7568#1 AAGAACATGCTAAAATATGTTAAGTAAACTCGCTTAAAGAAACCTGGCAACCCCAATACC 172 *********** *************** consensus_7568#0 TATTCCAGCTAAGGCTGGACTTAAGTCATTATCGGCAACACCTGGCTTTACATCCACAGA 866 consensus_7568#1 TATTCCAGCTAAGGCTGGAC-------ATTATCGGCAACACCTGGCTTTACATCCACAGA 225 ******************** ********************************* consensus_7568#0 TTCCTGACAATTTTCCACTGGTCCCTCATTCAAAAATGCATTGGACACAGACCCATCTTG 926 consensus_7568#1 TTCCTGACAATTTTCCACTGGTCCCTCATTCAAAAATGCATTGGACACAGACCCATCTTG 285 ************************************************************ consensus_7568#0 TACTAATTTATTTTCTAGATATTTTAGACGCTCAGAGTACATCCGTATGGGTAACGCAGT 986 consensus_7568#1 TACTAATTTATTTTCTAGATATTTTAGACGCTCAGAGTACATCCGTATGGGTAACGCAGT 345 ************************************************************ consensus_7568#0 ACTTGAAACGTTG------- 999 consensus_7568#1 ACTTGAAACGTTGGCCTTGT 365 ************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||