cluster # 7587

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Schistosoma mansoni
cluster # 7587 cluster # 7587 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7587#0 length = 907 sequences # 4

consensus_7587#1 length = 358 sequences # 1

consensusID : consensus_7587#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 907
fasta sequence

                              [TGAATGTCTTACTTTATATTTAGAAAGCCGGGATGCATTTGCTGACTGGTATCAACAAGTACATACTAATCGACCAGTACAACCGTCTTCGTTAACAAATAATAATAATAATCTTATGCATACAACATATGGTCCTCGTGGTTTAGCACAACGTCTTGCTATTGAAGAATCAAAAAAAGAGTATTTAGCACGTCTTGAACGTTGGCGACATGATACACGTTTGGATACAGAGGCAGCAGCTGAAAAACTCTTAGCATTATTGACATATCCTCATCCTGGTTGGCTAGTTGATATAGAACAACAACAACAACAACAACAGCAGTAGCAGCTGAATATGGATCCAAATGATCGATTAACATCGACAACAAAAACTAATCATAATCACAGTATGAATTTTCATCATGATAAACTAATGGATCATGAAATAGAATATAATGAAGGTGAAACACATGAAAAACATTGTGGAACATTACTTGTAAATAAAGAAGATTTATTTGATGGACTTGGTGAAAATTCTACTTCACGTCAATTACAAATGAATGTACTACGAGAGACATGTATTACAGAGACAGTATTTCTTATTGTTCGTTTATATCAAACTGCTGGATTACATCAAAAATGTATTGAATTATCTAATTTAATTGTAGATAATGAATATGGTTTATTCAAGTTGTTCTCTGGACCTCAACTTCAAAATCTTCTTCATCATATCTCTGAATCCATTCAATATCTAATTGACAATGAACAAGATCCATTAGGTTATACTGTACATTAGTCATATGAATATGAC-TTATGCGCTGCTGTATTTCTAATGTATCAATGAACCGAAGTCGTCTATTTCTTGTGTATACAAATGGATGGAGATGTTTTTGTATCCCTATTTATGTTTTTTTTTTGTTTGTATGTA]

[+] EMBL AW017165             [TGAATGTCTTACTTTATATTTAGAAAGCCGGGATGCATTTGCTGACTGGTATCAACAAGTACATACTAATCGACCAGTACAACCGTCTTCGTTAACAAATAATAATAATAATCTTATGCATACAACATATGGTCCTCGTGGTTTAGCACAACGTCTTGCTATTGAAGAATCAAAAAAAGAGTATTTAGCACGTCTTGAACGTTGGCGACATGATACACGTTTGGATACAGAGGCAGCAGCTGAAAAACTCTTAGCATTATTGACATATCCTCATCCTGGTTGGCTAGTTGATATAGAACAACAACAACAACAACAACAGCAGTAGCAGCTGAATATGGATCCAAATGATCGATTAACATCGACAACAAAAACTAATCATAATCACAGTATGAATTTTCATCATGATAAACTAATGGATCATGAAATAGAATATAATGAAGGTGAAACACATGANAAACATTGTGGAACATTACTTGTAAATAAAGAAGATTTATTTGATGGACTTGGTGAAAATTCTACTTCACGTCAATTACAAATGAATGTACTACGAGAGACATGTATTACAGAGACA                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD119062             [                                                                                                                                                                                                                                                                                                                                                                                       TCATAATCACAGTATG ATTTTCATCATGATAAACTAATGGATCATGAAATAGAATATAATGAAGGTGAAACACATGAAAAACATTGTGGAACATTACTTGTAAATAAAGAAGATTTATTTGATGGACTTGGTGAAAATTCTACTTCACGTCAATTACAAATGAATGTACTACGAGAGACATGTATTACAGAGACAGTATTTCTTATTGTTCGTTTATATCAAACTGCTGGATTACATCAAAAATGTATTGAATTATCTAATTTAATTGTAGATAATGAATATGGTTTATTCAAGTTGTTCTCTGGACCTCAACTTCAAAATCTTCTTCATCATATCTCTGAATCCATTCAATATCTAATTGACAATGAACAAGATCCATTAGGTTATACTGTACATTAGTCATATGAATATGAC TTATACGCTGCTGTATTTCTAATGTAT                                                                                          ]
[-] EMBL CD137778             [                                                                                                                                                                                                                                                                                                                                                                                                                                  CACGAAATAGAATATAATGAAGGTGAAACACATGAAAAACATTGTGGAACATTACTTGTAAATAAAGAAGATTTATTTGATGGACTTGGTGAAAATTCTACTTCACGTCAATTACAAATGAATGTACTACGAGAGACATGTATTACAGAGACAGTATTTCTTATTGTTCGTTTATATCAAACTGCTGGATTACATCAAAAATGTATTGAATTATCTAATTTAATTGTAGATAATGAATATGGTTTATTCAAGTTGTTCTCTGGACCTCAACTTCAAAATCTTCTTCATCATATCTCTGAATCCATCCAATATCTAATTGACAATGAACAAGATCCATTAGGTTATACTGTACATTAGTCATATGAATATGGC TTATGCGCTGCTGTATTTCT                                                                                                 ]
[-] EMBL CD137084             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTCTTATTGTTCGTTTATATCGAACTGCTGGATTACATCAAAAATGTATTGAATTATCTAATTTAATTGTAGATAATGAATATGGTTTATTCAAGTTGTTCTCTGGACCTCAACTTCAAAATCTTCTTCATCATATCTTTGAATCCATTCAATATTTAATTGACAATGAACAAGATCCATTAGGTTATACTGTACATTAGTCATATGAATATGACTTTATGCGCTGCTGTATTTTTAATGTATCAATGAACCGAAGTCGTCTATTTCTTGTGTATACAAATGGATGGAGATGTTTTTGTATCCCTATTTATGTTTTTTTTTTGTTTGTATGTA]




>consensus_7587#0
TGAATGTCTTACTTTATATTTAGAAAGCCGGGATGCATTTGCTGACTGGTATCAACAAGT
ACATACTAATCGACCAGTACAACCGTCTTCGTTAACAAATAATAATAATAATCTTATGCA
TACAACATATGGTCCTCGTGGTTTAGCACAACGTCTTGCTATTGAAGAATCAAAAAAAGA
GTATTTAGCACGTCTTGAACGTTGGCGACATGATACACGTTTGGATACAGAGGCAGCAGC
TGAAAAACTCTTAGCATTATTGACATATCCTCATCCTGGTTGGCTAGTTGATATAGAACA
ACAACAACAACAACAACAGCAGTAGCAGCTGAATATGGATCCAAATGATCGATTAACATC
GACAACAAAAACTAATCATAATCACAGTATGAATTTTCATCATGATAAACTAATGGATCA
TGAAATAGAATATAATGAAGGTGAAACACATGAAAAACATTGTGGAACATTACTTGTAAA
TAAAGAAGATTTATTTGATGGACTTGGTGAAAATTCTACTTCACGTCAATTACAAATGAA
TGTACTACGAGAGACATGTATTACAGAGACAGTATTTCTTATTGTTCGTTTATATCAAAC
TGCTGGATTACATCAAAAATGTATTGAATTATCTAATTTAATTGTAGATAATGAATATGG
TTTATTCAAGTTGTTCTCTGGACCTCAACTTCAAAATCTTCTTCATCATATCTCTGAATC
CATTCAATATCTAATTGACAATGAACAAGATCCATTAGGTTATACTGTACATTAGTCATA
TGAATATGACTTATGCGCTGCTGTATTTCTAATGTATCAATGAACCGAAGTCGTCTATTT
CTTGTGTATACAAATGGATGGAGATGTTTTTGTATCCCTATTTATGTTTTTTTTTTGTTT
GTATGTA

consensusID : consensus_7587#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 358
fasta sequence

                              [CCCCTTCATAAAAGAAGATTTATTTGATGGACTTGGTGAAAATTCTACTTCACGTCAATTACAAATGAATGTACTACGAGAGACATGTATTACAGAGACAGTATTTCTTATTGTTCGTTTATATCAAACTGCTGGATTACATCAAAAATGTATTGAATTATCTAATTTAATTGTAGATAATGAATATGGTTTATTCAAGTTGTTCTCTGGACCTCAACTTCAAAATCTTCTTCATCATATCTCTGAATCCATTCAATATCTAATTGACAATGAACAAGATCCATTAGGTTATACTGCACATTAGTCATATGAATATGACTTATGCGCTGCTGTATTTCTAATGTATCAATGAACCGAA]

[+] EMBL CD137074             [CCCCTTCATAAAAGAAGATTTATTTGATGGACTTGGTGAAAATTCTACTTCACGTCAATTACAAATGAATGTACTACGAGAGACATGTATTACAGAGACAGTATTTCTTATTGTTCGTTTATATCAAACTGCTGGATTACATCAAAAATGTATTGAATTATCTAATTTAATTGTAGATAATGAATATGGTTTATTCAAGTTGTTCTCTGGACCTCAACTTCAAAATCTTCTTCATCATATCTCTGAATCCATTCAATATCTAATTGACAATGAACAAGATCCATTAGGTTATACTGCACATTAGTCATATGAATATGACTTATGCGCTGCTGTATTTCTAATGTATCAATGAACCGAA]




>consensus_7587#1
CCCCTTCATAAAAGAAGATTTATTTGATGGACTTGGTGAAAATTCTACTTCACGTCAATT
ACAAATGAATGTACTACGAGAGACATGTATTACAGAGACAGTATTTCTTATTGTTCGTTT
ATATCAAACTGCTGGATTACATCAAAAATGTATTGAATTATCTAATTTAATTGTAGATAA
TGAATATGGTTTATTCAAGTTGTTCTCTGGACCTCAACTTCAAAATCTTCTTCATCATAT
CTCTGAATCCATTCAATATCTAATTGACAATGAACAAGATCCATTAGGTTATACTGCACA
TTAGTCATATGAATATGACTTATGCGCTGCTGTATTTCTAATGTATCAATGAACCGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7587#0      TGAATGTCTTACTTTATATTTAGAAAGCCGGGATGCATTTGCTGACTGGTATCAACAAGT 60
consensus_7587#1      ------------------------------------------------------------
                                                                                  

consensus_7587#0      ACATACTAATCGACCAGTACAACCGTCTTCGTTAACAAATAATAATAATAATCTTATGCA 120
consensus_7587#1      ------------------------------------------------------------
                                                                                  

consensus_7587#0      TACAACATATGGTCCTCGTGGTTTAGCACAACGTCTTGCTATTGAAGAATCAAAAAAAGA 180
consensus_7587#1      ------------------------------------------------------------
                                                                                  

consensus_7587#0      GTATTTAGCACGTCTTGAACGTTGGCGACATGATACACGTTTGGATACAGAGGCAGCAGC 240
consensus_7587#1      ------------------------------------------------------------
                                                                                  

consensus_7587#0      TGAAAAACTCTTAGCATTATTGACATATCCTCATCCTGGTTGGCTAGTTGATATAGAACA 300
consensus_7587#1      ------------------------------------------------------------
                                                                                  

consensus_7587#0      ACAACAACAACAACAACAGCAGTAGCAGCTGAATATGGATCCAAATGATCGATTAACATC 360
consensus_7587#1      ------------------------------------------------------------
                                                                                  

consensus_7587#0      GACAACAAAAACTAATCATAATCACAGTATGAATTTTCATCATGATAAACTAATGGATCA 420
consensus_7587#1      ------------------------------------------------------------
                                                                                  

consensus_7587#0      TGAAATAGAATATAATGAAGGTGAAACACATGAAAAACATTGTGGAACATTACTTGTAAA 480
consensus_7587#1      ---------------------------------------------------CCCCTTCAT 9
                                                                          *   * * 

consensus_7587#0      TAAAGAAGATTTATTTGATGGACTTGGTGAAAATTCTACTTCACGTCAATTACAAATGAA 540
consensus_7587#1      AAAAGAAGATTTATTTGATGGACTTGGTGAAAATTCTACTTCACGTCAATTACAAATGAA 69
                       ***********************************************************

consensus_7587#0      TGTACTACGAGAGACATGTATTACAGAGACAGTATTTCTTATTGTTCGTTTATATCAAAC 600
consensus_7587#1      TGTACTACGAGAGACATGTATTACAGAGACAGTATTTCTTATTGTTCGTTTATATCAAAC 129
                      ************************************************************

consensus_7587#0      TGCTGGATTACATCAAAAATGTATTGAATTATCTAATTTAATTGTAGATAATGAATATGG 660
consensus_7587#1      TGCTGGATTACATCAAAAATGTATTGAATTATCTAATTTAATTGTAGATAATGAATATGG 189
                      ************************************************************

consensus_7587#0      TTTATTCAAGTTGTTCTCTGGACCTCAACTTCAAAATCTTCTTCATCATATCTCTGAATC 720
consensus_7587#1      TTTATTCAAGTTGTTCTCTGGACCTCAACTTCAAAATCTTCTTCATCATATCTCTGAATC 249
                      ************************************************************

consensus_7587#0      CATTCAATATCTAATTGACAATGAACAAGATCCATTAGGTTATACTGTACATTAGTCATA 780
consensus_7587#1      CATTCAATATCTAATTGACAATGAACAAGATCCATTAGGTTATACTGCACATTAGTCATA 309
                      *********************************************** ************

consensus_7587#0      TGAATATGACTTATGCGCTGCTGTATTTCTAATGTATCAATGAACCGAAGTCGTCTATTT 840
consensus_7587#1      TGAATATGACTTATGCGCTGCTGTATTTCTAATGTATCAATGAACCGAA----------- 358
                      *************************************************           

consensus_7587#0      CTTGTGTATACAAATGGATGGAGATGTTTTTGTATCCCTATTTATGTTTTTTTTTTGTTT 900
consensus_7587#1      ------------------------------------------------------------
                                                                                  

consensus_7587#0      GTATGTA 907
consensus_7587#1      -------