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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7598#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 799 fasta sequence
[TTAGCTTTTTTATTTAAATTGCCGATGCAAACCATTATTTCTTAGTGCATAACGCTAGAAGTGTGTTACAGTTAGGAAACAAACACATGAAAAGAGTTTCTTGATGTCGAATGACATCTTATGATGCAAAAATATACATCTAGAACTTCGCACGGCAGTTACGTAAGTAAATATAATCTATTGACAGAGCGGTAATCGCAGAAGATATATTGAAGAACTTCATGGTGGACCTCAATACTAATACATTCACAATTACTGTAAAGTTGTAATAGCATTTAGCATTCATTTACGACGACCCATGACAAGTTTTAGTTTCCTGCGGTCCTTGGAAGGTATTAAATCATCTACATCTTCCTGTAATGACAATTTATCTGGTGTTTTGTCATCTTCACTTAAAGCATAAGTTGAACATTTA-TAGCTCTCTAACTTTCTTTTCTTTTCATTCAGAACAGCTGAAAACTTCGACAGAAGGATAA-TTTCTTTG-TCA-TCTA-TCTGAGAAACCACTTCTTCA-TATTTCTTTACGGACACATCAGCCAAAGACTTAAGCTTCTCGTTTTCTCTCTCAAAATCACTGCAGCA-TAAAATCGA-TTCTTTGAGATTATTTGCGATTAAACCCGTCAA-TTCGCTGAGTGA-TTCC-A--TGGATTATATGAAGGTTTTAAGTAAAAAGATCCGAAGATGATTTTAATGCCTTTCTTAATTTCTTTGGACCACACGAAATTTAAAACCGCTCCCTCTTCTCTCAAAGTAAAGCAGCTAGATGGGTCAGAAGAACCCTCGTGCCGAATCTTGGCCTCGGAGG]
[+] EMBL CD076195 [TTAGCTTTTTTATTTAAATTGCCGATGCAAACCATTATTTCTTAGTGCATAACGCTAGAAGTGTGTTACAGTTAGGAAACAAACACATGAAAAGAGTTTCTTGATGTCGAATGACATCTTATGATGCAAAAATATACATCTAGAACTTCGCACGGCAGTTACGTAAGTAAATATAATCTATTGACAGAGCGGTAATCGCAGAAGATATATTGAAGAACTTCATGGTGGACCTCAATACTAATACATTCACAATTACTGTAAAGTTGTAATAGCATTTAGCATTCATTTACGACGACCCATGACAAGTTTTAGTTTCCTGCGGTCCTTGGAAGGTATTAAATCATCTACATCTTCCTGTAATGACAATTTATCTGGTGTTTTGTCATCTTCACTTAAAGCATAAGTTGAACATTTA TAGCTCTCTAACTTTCTTTTCTTTTCATTCAGAACAGCTGAAAACTTCGACAGAAGGATAA TTTCTTTG TCA TCTA TCTGAGAAACCACTTCTTCA TATTTCTTTACGGACACATCAGCCAAAGACTTAAGCTTCTCGTTTTCTCTCTCAAAATCACTGCAGCA TAAAATCGA TTCTTTGAGATTATTTGCGATTAAACCCGTCAA TTCGCTGAGTGA TTCC A TGGA TATATGAA ]
[-] EMBL CD082599 [ ACGGCAGTTACGTAAGTAAATATAATCTATTGACAGAGCGGTAATCGCAGAAGATATA TGAAGAACTTCATGGTGGACCTCAATACTAATACATTCACAATTACTGTAAAGTTGTAATAGCATTTAGCATTCATTTACGACGACCCATGACAAGTTTTAGTTTCCTGCGGTCCTTGGAAGGTATTAAATCATCTACATCTTCCTGTAATGACAATTTATCTGGTGTTTTGTCATCTTCACTTAAAGCATAAGTTGAACATTTA TAGCTCTCTAACTTTCTTTTCTTTTCATTCAGAACAGCTGAAAACTTCGACAGAAGGATAA TTTCTTTG TCA TCTA TCTGAGAAACCACTTCTTCA TATTTCTTTACGGACACATCAGCCAAAGACTTAAGCTTCTCGTTTTCTCTCTCAAAATCACTGCAGCA TAAAATCGA TTCTTTGAGATTATTTGCGATTAAACCCGTCAA TTCGCTGAGTGA TTCCAA TGGATTATATGAAGGTTTTAAGTAAAAAGATCCGAAGATGATTTTAATGCCTTTCTTAATTTCTTTGGACCACACGAAATTTAAAACCGCTCCCTCTTCTCTCAAAGTAAAGCAGCTAGATGGGTCAGAAGAACCCTCGTGCCGAATCTTGGCCTCGGAGG]
[-] EMBL CD171367 [ CCTGTATTGACATTTTTTC GGTGTTTTGTCTTCTTCACTTAAAGCTTAAGTTGAAC TTTATTAGCTCTCTAACTATCTTATC TTTCATTCAGAACAGCTGAAAACTTCGACAGAAGGATAATTTTCTTTGTTCATTCTATTCTGAGAAACCACTTCTTCAGTTTTTCTTTACGGACACATCAGCCAAAGACTTAAGCTTCTCGTTTTCTCTCTCAAAATCACTGCAGCATTAAAATCGATTTCTTTGAGATTATTTGCGATTAAACCCGTCAATTTCGCTGAGTGATTTCC AAGTGGATTATATGTAGGTTTTAAGTAAAAAGATCCGAAGATGATTTTAATGCCTTTCTTAATTTCTTTGGACCACACGAAATTTAAAACCGCTCCCTCTTCTCTCAAAG ]
[-] EMBL CD171443 [ TAA TTTCTNTG TCA TCTA TCTGAGAGACCACTTCTTCA TATATCTTTACGGACACATCAGCCAAAGACTTAAGCTTCTCGTTTTCTCTCTCAAAATCACTGCAGCA TAAAATCGA TCCTTTGAGATTATTTGCGATTAAACCCGTCAA TTCGCTGAGTGA TTCCAA TGGATTATATGAAGGTTTTAAGTAAAAAGATCCGAAGATGATTTTAATGCCTTTCTTAATTTCTTTGGACCACACGAAATTTAAAACCGCTCCCTCTTCTCTCAAAG ]
consensusID : consensus_7598#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[TATATAGATAAAAGCTGATTAACAGCAAGATATACAGCAGTTCGATGTAATAATAACAGAAAACTACGAAGATTCGTATATCACATGGCCGGGGATACGTACATACTTCCTCTAGGCTCAGGTATACTATAATTTTTAGCATTCATTTACGACGACCCGTGACAAGTTTTAGTTTTCTGCGGTCCTTGGAAGGTATTAAATCATCTACATCTTCCTGTAATGACAATTTATCTGGTGTTTTGTCATCTTCACTTAAAGCATAAGTTGGACATTTATAGCTCTCTAACTTTCTTTTCTTTTCATTCAGAACAGCTGAAAACTTCGACAGAAGGATAATTTCTTTGTCATCTATCTGAGAAACCACTTCTTCATATCTCTTTACGGACACATCAGCCCAAGACTTAAGCATCTCGTTTTCTCTCTCAAAATCACTGCAGCATAAAATC]
[+] EMBL CD140584 [TATATAGATAAAAGCTGATTAACAGCAAGATATACAGCAGTTCGATGTAATAATAACAGAAAACTACGAAGATTCGTATATCACATGGCCGGGGATACGTACATACTTCCTCTAGGCTCAGGTATACTATAATTTTTAGCATTCATTTACGACGACCCGTGACAAGTTTTAGTTTTCTGCGGTCCTTGGAAGGTATTAAATCATCTACATCTTCCTGTAATGACAATTTATCTGGTGTTTTGTCATCTTCACTTAAAGCATAAGTTGGACATTTATAGCTCTCTAACTTTCTTTTCTTTTCATTCAGAACAGCTGAAAACTTCGACAGAAGGATAATTTCTTTGTCATCTATCTGAGAAACCACTTCTTCATATCTCTTTACGGACACATCAGCCCAAGACTTAAGCATCTCGTTTTCTCTCTCAAAATCACTGCAGCATAAAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7598#0 TTAGCTTTTTTATTTAAATTGCCGATGCAAACCATTATTTCTTAGTGCATAACGCTAGAA 60
consensus_7598#1 ------------------------------------------------------------
consensus_7598#0 GTGTGTTACAGTTAGGAAACAAACACATGAAAAGAGTTTCTTGATGTCGAATGACATCTT 120
consensus_7598#1 ------------------------------------------------------------
consensus_7598#0 ATGATGCAAAAATATACATCTAGAACTTCGCACGGCAGTTACGTAAGTAAATATAATCTA 180
consensus_7598#1 ------------TATATAGATAAAAGCTGAT-------TAACAGCAAGATATACAGCAGT 41
**** * ** ** * * ** * * *** *
consensus_7598#0 TTGACAGAGCGGTAATCGCAGAAGATATATTGAAGAACTTCATGGTGGACCTCAATACTA 240
consensus_7598#1 TCGATGTAATAATAACAGAAAACTACGAAGATTCGTATATCACA-TGGCCGGGGATACGT 100
* ** * *** * * * * * * * *** *** * ****
consensus_7598#0 ATACATTCACAATTACTGTAAAGTTGTAATAGCATTTAGCATTCATTTACGACGACCCAT 300
consensus_7598#1 ACATACTTCCTCTAGGCTCAGGTATACTATAATTTTTAGCATTCATTTACGACGACCCGT 160
* * * * * * * * *** ************************ *
consensus_7598#0 GACAAGTTTTAGTTTCCTGCGGTCCTTGGAAGGTATTAAATCATCTACATCTTCCTGTAA 360
consensus_7598#1 GACAAGTTTTAGTTTTCTGCGGTCCTTGGAAGGTATTAAATCATCTACATCTTCCTGTAA 220
*************** ********************************************
consensus_7598#0 TGACAATTTATCTGGTGTTTTGTCATCTTCACTTAAAGCATAAGTTGAACATTTATAGCT 420
consensus_7598#1 TGACAATTTATCTGGTGTTTTGTCATCTTCACTTAAAGCATAAGTTGGACATTTATAGCT 280
*********************************************** ************
consensus_7598#0 CTCTAACTTTCTTTTCTTTTCATTCAGAACAGCTGAAAACTTCGACAGAAGGATAATTTC 480
consensus_7598#1 CTCTAACTTTCTTTTCTTTTCATTCAGAACAGCTGAAAACTTCGACAGAAGGATAATTTC 340
************************************************************
consensus_7598#0 TTTGTCATCTATCTGAGAAACCACTTCTTCATATTTCTTTACGGACACATCAGCCAAAGA 540
consensus_7598#1 TTTGTCATCTATCTGAGAAACCACTTCTTCATATCTCTTTACGGACACATCAGCCCAAGA 400
********************************** ******************** ****
consensus_7598#0 CTTAAGCTTCTCGTTTTCTCTCTCAAAATCACTGCAGCATAAAATCGATTCTTTGAGATT 600
consensus_7598#1 CTTAAGCATCTCGTTTTCTCTCTCAAAATCACTGCAGCATAAAATC-------------- 446
******* **************************************
consensus_7598#0 ATTTGCGATTAAACCCGTCAATTCGCTGAGTGATTCCATGGATTATATGAAGGTTTTAAG 660
consensus_7598#1 ------------------------------------------------------------
consensus_7598#0 TAAAAAGATCCGAAGATGATTTTAATGCCTTTCTTAATTTCTTTGGACCACACGAAATTT 720
consensus_7598#1 ------------------------------------------------------------
consensus_7598#0 AAAACCGCTCCCTCTTCTCTCAAAGTAAAGCAGCTAGATGGGTCAGAAGAACCCTCGTGC 780
consensus_7598#1 ------------------------------------------------------------
consensus_7598#0 CGAATCTTGGCCTCGGAGG 799
consensus_7598#1 -------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||