These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7605#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1544 fasta sequence [CATATCCGATGAGAATGTACTACCCACGTCACAGTTGTTGAAATCTTTTATGGATCAAATGCGCTATTTTCAAAAAGGAGATTTAGAGGCATCTATTCGACCAGTTACAATGTGGATAGTTATCAGTGATTTGGATCAAATTTTCGATTCCAATTTACCTGAAGAACATCGTCTTCAACTTCAAATGGATTGCAATTTAGCTCTTAATGCATTGACATTTCTACGTAGCGCTCATTCTACAAAAGGTTTACGTATTGGTTTCGTATATAACCCATTAAAAATAATTAAAGAAGAAAAGAAATCAACTGATCATTGGTTAACACGTGTACTTTATCTTGTTGGTAATCCAATCAATATAACACTACCATTATCTAATCAACTGAATAATGAAATAATAGCAAAACGAAAATATGCTGAACAAATGTCAGGACGTAATTTTGCTATACGTCTTATCAAGGAAATATTGGAATCAATCAAAACTTCTAAACCTATGAAATCTTTAGAAGAACTTTTAGTTTCAGGCATGGATTCC-AACAGATACATGATGCTATTCAATTATTTGATAGAAATAATTTTATGCAAATGCACTCAACTATTGCCTGTCAGATTATTGGTCTGAAACCCGGTGAACGAGCTGTTATTGTGAATGGTAAAATAGTCGGTCCATTCGAACCCTTTGAAGAGTTTCTGTCTGATGATTTTCGTTTAGCAGAACGTTTAGCATTAGATAATGGTGCTAAAGAGCTTGGGGATAAACTGGAAAAAATTTTAGGCACAACAGCTGGAGCTCCTGATATTATCTCTGAACTCACTTGGCAATTATCTTCAGTGCTCCAATCAGGTATTGAAGCTACCAGTTCAGTCATATCTGAAACGTCTTCCGTAGATGGGATCTCGGACAAAAGTCAAAATGGACATAGAATACTTCTTCATGGTGTATCATACAATCATTCAGGTTTCATTATTCACGGAAATAAAAATGAACCAAATTTTGAATTAGTCGCTATCATAGATCCGGCTTCTCGTGATGCTCAACGTCTATCTCATATACTGATTGTACTACAGCACTCTTTGCCATGTACTGTAAAAGTTTTATTCAATCCATCACCTTCGTTATCTGAACTACCAGTGAAAAGTTTTTATCGTTTCGTATGGGA-ACCATCATTGTTTCCAGAAAATGAATCTATACTCAATCCATCTGTTATTGTACCTCGTGCTTATTTTACTCACTTACCTGGTCAATCTTTGCTTACATTGGGAATGGATGAACCACATGGTTGGATGGTTGCTGCTATTAAAGCTGTACAAGATCTAGATAATCTACGCCTAGTTGATTATCACTCTACACAACATTTAGTGGAAGCTGTTTTCGAATTAGAATATCTTTTACTTGAAGGTCATTGTATGGAAGAGGGGAGTATGAAACCTCCACGTGGACTTCAATTTACGCTTGGTCCCACACCAACTACCATTGAATATGATACAATCGTTATGGCTAATTTGGGTTACTTTCAACTCAAAGCCAATCCTGGCGCTTGGCATTT] [+] EMBL CD191871 [CATATCCGATGAGAATGTACTACCCACGTCACAGTTGTTGAAATCTTTTATGGATCAAATGCGCTATTTTCAAAAAGGAGATTTAGAGGCATCTATTCGACCAGTTACAATGTGGATAGTTATCAGTGATTTGGATCAAATTTTCGATTCCAATTTACCTGAAGAACATCGTCTTCAACTTCAAATGGATTGCAATTTAGCTCTTAATGCATTGACATTTCTACGTAGCGCTCATTCTACAAAAGGTTTACGTATTGGTTTCGTATATAACCCATTAAAAATAATTAAAGAAGAAAAGAAATCAACTGATCATTGGTTAACACGTGTACTTTATCTTGTTGGTAATCCAATCAATATAACACTACCATTATCTAATCAACTGAATAATGAAATAATAGCAAAACGAAAATATGCTGAACAAATGTCAGGACGTAATTTTGCTATACGTCTTATCAAGGAAATATTGGAATCAATCAAAACTTCTAAACCTATGAAATCTTTAGAAGAACTTTTAGTTTCAGGCATGGATTCC AACAGATACATGATGCTATTCAATTATTTGATAGAAATAATTTTATGCAAATGCACTCAACTATTGCCTGTCAAATTATTGGTCT ] [+] EMBL CD169823 [ TCTAATCAACTGAATAATGAAATAATAGCAAAACGAAAATATGCTGAACAAATGTCAGGACGTAATTTTGCTATACGTCTTATCAAGGAAATATTGGAATCAATCAAAACTTCTAAACCTATGAAATCTTTAGAAGAACTTTTAGTTTCAGGCATGGATTCCAAACAGATACATGATGCTATTCAATTATTTGATAGAAATAATTTTAAGCAAATGCACTCAACTATTGCCTGTCAGATTATTGGTCTGAAACCCGGTGAACGAGCTGTTATTGTGAATGGTAAAATAGTCGGTCCATTCGAACCCTTTGAAGAGTTTCTGTCTGATGATTTTCGTTTAGCAGAACGTTTAGC ] [+] EMBL AI976250 [ ATTGCCTGTCAGATTATTGGTCTGAAACCCGGTGAACGAGCTGTTGTTGTGAATGGTAAAATAGTCGGTCCATTCGAACCATTTGAAGAGTTTCTGTCTGATGATTTTCGTTTAGCAGAACGTTTAGCATTAGATAATGGTGCTAAAGAGCTTGGGGATAAACTGGAAAAAATTTTAGGCACAACAGCTGGAGCTCCTGATATTATCTCTGAACTCACTTGGCAATTATCTTCAGTGCTCCAATCAGGTATTGAAGCTACCAGTTCAGTCATATCTGAAACGTCTTCCGTAGATGGGATCTCGGACAAAAGTCAAAATGGACATAGAATACTTCTTCATGGTGTATCATACAATCATTCAGGTTTCATTATTCACGGAAATAAAAATGAACCAAATTTTGAATTAGTCGCTATCATAGATCCGGCTTCTCGTGATGCTCAACGTCTATCTCATATACTGATTGTACTACAGCACTCTTTGCCATGTACTGTAAAAGTTTTATTCAATCCATCACCTTCGTTATCTGAACTACCAGTGAAAAGTTTTTATCGTTTCGTATGGGA ACCATCATTGTTTCCAGAAAATGAATCTATACTCAATCCATCTGTTATTGTACCTCGTGCTTATTTTACTCACTTACCTGGTCAATCTTTGCTTACATTGGGAA ] [+] EMBL CD115895 [ ATTGTACTACAGCACTCTTTGCCATGTACTGTAAAAGTTTTATTCAATCCATCACCTTCGTTATCTGAACTACCAGTGAAAAGTTTTTATCGTTTCGTATGGTATTCTATCATTGTTTCCAGAAAATGAATCTATACTCAATCCATCTGTTATTGTACCTCGTGCTTATTTTACTCACTTACCTGGTCAATCTTTGCTTACATTGGGAATGGATGAACCACATGGTTGGATGGTTGCTGCTATTAAAGCTGTACAAGATCTAGATAATCTACGCCTAGTTGATTATCACTCTACACAACATTTAGTGGAAGCTGTTTTCGAATTAGAATATCTTTTACTTGAAGGTCATTGTATGGAAGAGGGGAGTATGAAACCTCCACGTGGACTTCAATTTACGCTTGGTCCCACACCAACTACCATTGAATATGATACAATCGTTATGGCTAATTTGGGTTACTTTCAACTCAAAGCCAATCCTGGCGCTTGGCATTT] consensusID : consensus_7605#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 740 fasta sequence [GAGGCCAANAATTCGGCACGAGGTCCAATCCATCTATTATTGTACCTCGTGCTTATTTTACTCACTTACCTGGTCAATCTTTGCTTACATTGGGAATGGATGAACCACATGGTTGGATGGTTGCTGCTATTAAAGCTGTACAAGATCTAGATAATCTACGCCTAGTTGATTATCACTCTACACAACATTTAGTGGAAGCTGTTTTCGAATTAGAATATCTGTTACTTGAAGGTCATTGTATGGAAGAGGGGAGTATGAAACCTCCACGTGGACTTCAATTTACGCTTGGTCCCACACCAACTACTATTGAATATGATACAATTGTTATGGCTAATTTGGGTTACTTTCAACTCAAAGCCAATCCTGGCGCTTGGCATTTAAATATTCGTGCGGGAAAGTCACAAAAACTTTATGAAATATCCGGCCAAGAACATACTGATACATCTGTTAATTCTAAAGAAATTATCACATTGATTAGTAATTTCCGTTCTAAAATCATTGAAGTCTCTGTTAATAAACGTGCCGAATTTGCCAGTGAAAGTATGTTAGATGATAGTTCTGAAGAATCAAATAATTGGTTAAATAAACATTCAGAAGTTTGGTCCACATTATCGAATTATGCTGATGAATATTGTCCTTCTTGGCTTAGTGGTCTAAAACATTCAATTGCATCTCATTTGCCTTGGCATANATGTGCTTCANATCAAGAACTATCACATTNTCTCTGTTGCCTCTGGTCA] [+] EMBL CD079710 [GAGGCCAANAATTCGGCACGAGGTCCAATCCATCTATTATTGTACCTCGTGCTTATTTTACTCACTTACCTGGTCAATCTTTGCTTACATTGGGAATGGATGAACCACATGGTTGGATGGTTGCTGCTATTAAAGCTGTACAAGATCTAGATAATCTACGCCTAGTTGATTATCACTCTACACAACATTTAGTGGAAGCTGTTTTCGAATTAGAATATCTGTTACTTGAAGGTCATTGTATGGAAGAGGGGAGTATGAAACCTCCACGTGGACTTCAATTTACGCTTGGTCCCACACCAACTACTATTGAATATGATACAATTGTTATGGCTAATTTGGGTTACTTTCAACTCAAAGCCAATCCTGGCGCTTGGCATTTAAATATTCGTGCGGGAAAGTCACAAAAACTTTATGAAATATCCGGCCAAGAACATACTGATACATCTGTTAATTCTAAAGAAATTATCACATTGATTAGTAATTTCCGTTCTAAAATCATTGAAGTCTCTGTTAATAAACGTGCCGAATTTGCCAGTGAAAGTATGTTAGATGATAGTTCTGAAGAATCAAATAATTGGTTAAATAAACATTCAGAAGTTTGGTCCACATTATCGAATTATGCTGATGAATATTGTCCTTCTTGGCTTAGTGGTCTAAAACATTCAATTGCATCTCATTTGCCTTGGCATANATGTGCTTCANATCAAGAACTATCACATTNTCTCTGTTGCCTCTGGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7605#0 CATATCCGATGAGAATGTACTACCCACGTCACAGTTGTTGAAATCTTTTATGGATCAAAT 60 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 GCGCTATTTTCAAAAAGGAGATTTAGAGGCATCTATTCGACCAGTTACAATGTGGATAGT 120 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 TATCAGTGATTTGGATCAAATTTTCGATTCCAATTTACCTGAAGAACATCGTCTTCAACT 180 consensus_7605#1 -------------------------GAGGCCAANAATTCGGCACGAGGTCCAATCCATCT 35 ** **** * * * * ** * ** ** consensus_7605#0 TCAAATGGATTGCAATTTAGCTCTTAATGCATTGACATTTCTACGTAGCGCTCATTCTAC 240 consensus_7605#1 ATTATTGTACCTCGTGCTTATTTT--ACTCACTTACCTGGTCAATCTTTGCTTACATTGG 93 * ** * * * * * * ** * ** * * *** * * consensus_7605#0 AAAAGGTTTACGTAT-TGGTTTCGTATATAAC-CCATTAAAAATAATTAAAGAAGAAAAG 298 consensus_7605#1 GAATGGATGAACCACATGGTTGGATGGTTGCTGCTATTAAAGCTG--TACAAGATCTAGA 151 ** ** * * * ***** * * * ****** * ** * * * consensus_7605#0 AAATCAACTGATCATTGGTTAACACG-TGTACTTTATCTTGTTGGTAATCCAATCAATAT 357 consensus_7605#1 TAATCTACGCCTAGTTGATTATCACTCTACACAACATTTAGTGGAAGCTGTTTTCGAATT 211 **** ** * *** *** *** * ** ** * ** * * ** * * consensus_7605#0 AACACTACCATTATCTAATCAACTGAATAATGAAATAATAGCAAAACGAAAATATGCTGA 417 consensus_7605#1 AGAATATCTGTTACTTGA------AGGTCATTGTAT----GGAAGAGGGGAGTATG--AA 259 * * * *** * * * ** ** * ** * * * **** * consensus_7605#0 ACAAATGTCAGGACGTAATTTTGCTATACGTCTTAT-CAAGGAAATATTGGAATCAATCA 476 consensus_7605#1 ACCTCCACGTGGACTTCAATTTACGCTTGGTCCCACACCAACTACTATTGAATATGAT-A 318 ** **** * * *** * * *** * * * * ***** * ** * consensus_7605#0 AAACTTCTAAACCTATGAAATCTTTAGAAGAACTTTTAGTTTCAGGCATGGATTCCAACA 536 consensus_7605#1 CAATTGTTATGGCTAA-------TTTGGGTTACTTTCAACTCAAAGCC--AATCCTGGCG 369 ** * ** *** ** * ***** * * * ** ** * * consensus_7605#0 GATA-CATGATGCTATTCAATTATTTGA-TAGAAATAATTTTATGCAA-ATGCACTCAAC 593 consensus_7605#1 CTTGGCATTTAAATATTCGTGCGGGAAAGTCACAAAAACTTTATGAAATATCCGGCCAAG 429 * *** ***** * * ** ** ****** ** ** * *** consensus_7605#0 TATTGCCTGTCAGATTATTGGTCTGAAACCCGGTGAACGAGCTGTTATTGTGAATGGTAA 653 consensus_7605#1 AACATACTGATACATC-----TGTTAATTC---TAAAGAAATTATCACATTGATTAGTA- 480 * *** * ** * * ** * * ** * * * * *** * *** consensus_7605#0 AATAGTCGGTCCATTCGAACCCTTTGAAGAGTTT-CTGTCTGATGATTTTCGTTTAGCAG 712 consensus_7605#1 -ATTTCCGTTCTA----AAATCATTGAAGTCTCTGTTAATAAACGTGCCGAATTTGCCAG 535 ** ** ** * ** * ****** * * * * * *** *** consensus_7605#0 AACGTTTAGCATTAGATAATGGTGCTAAAGAGCTTGGGGATAAACTGGAAAAAATTTTAG 772 consensus_7605#1 TGAAAGTA-TGTTAGATGATAGTTCTGAAGAATCAAATAATTGGTTAAATAAACATTCAG 594 ** ****** ** ** ** **** ** * * *** ** ** consensus_7605#0 GCACAACAGCTGGAGCTCCTGATATTATCTCTGAACTCACTTGGCAATTATCTTCAGTGC 832 consensus_7605#1 A------AGTTTGGTCC----ACATTATC---GAATTATGCTGATGAATATTGTCC-TTC 640 ** * * * * ****** *** * ** * *** ** * * consensus_7605#0 TCCAATCAGGTATTGAAGCTACCAGTTCAGTCATATCTGAAACGTCTTC-CGTAGATGGG 891 consensus_7605#1 TTGGCTTAGTGGTCTAAAACA----TTCAATTGCATCTCATTTGCCTTGGCATANATGTG 696 * * ** * ** * **** * **** * * *** * ** *** * consensus_7605#0 ATCTCGGACAAAAGTCAAAATGGACATAGAATACTTCTTCATGGTGTATCATACAATCAT 951 consensus_7605#1 CTTCANATCAAGAACTATCAC--ATTNTCTCTGTTGCCTC-TGGTCA------------- 740 * *** * * * * * * * ** **** consensus_7605#0 TCAGGTTTCATTATTCACGGAAATAAAAATGAACCAAATTTTGAATTAGTCGCTATCATA 1011 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 GATCCGGCTTCTCGTGATGCTCAACGTCTATCTCATATACTGATTGTACTACAGCACTCT 1071 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 TTGCCATGTACTGTAAAAGTTTTATTCAATCCATCACCTTCGTTATCTGAACTACCAGTG 1131 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 AAAAGTTTTTATCGTTTCGTATGGGAACCATCATTGTTTCCAGAAAATGAATCTATACTC 1191 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 AATCCATCTGTTATTGTACCTCGTGCTTATTTTACTCACTTACCTGGTCAATCTTTGCTT 1251 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 ACATTGGGAATGGATGAACCACATGGTTGGATGGTTGCTGCTATTAAAGCTGTACAAGAT 1311 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 CTAGATAATCTACGCCTAGTTGATTATCACTCTACACAACATTTAGTGGAAGCTGTTTTC 1371 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 GAATTAGAATATCTTTTACTTGAAGGTCATTGTATGGAAGAGGGGAGTATGAAACCTCCA 1431 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 CGTGGACTTCAATTTACGCTTGGTCCCACACCAACTACCATTGAATATGATACAATCGTT 1491 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 ATGGCTAATTTGGGTTACTTTCAACTCAAAGCCAATCCTGGCGCTTGGCATTT 1544 consensus_7605#1 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||