These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7609#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence [GTTATTCGATTACCTGAAAAATTGCTGTGAACAAGTTAGGTGATAATGTTTGGACAATGAAAGTGATTCACCTCAGAGTTCTTAGTAGCTGCTTTACTGAATGGTCGACATGAATTCATCTTTTTTTACAATACGCTTGCAACGAATGAAGATGTAAAGGACTCACTATCGAATTTGGCTGATGATTTGGGATGCATTCTGTTTGACCATTTACGACAAGTAGATGCGGACTTCAATTTTATGTTACCTGTCACTGCGACATACGATCTAGACACTCGACTCATGTTGATGCTTGACAGGAGTATGATGCCTGAGTCCAACACGGACGATTCCACACGTGTTAAGACTGCGTGGGTGACGTTAGCCGCAATGGCCTCTGCTTACATCTTCAAAAATGTTGGAGAATCGGTTTCCAAACCTCTTCGAAAATGGCTGGCGAATGCTGCCAGTGCTGCGATTCTCGCAGGACTACTTGCAGAAGTTCCCGAGTCGTCGGAACAGATGAACAAACCACTTCTGATGGACACGCGCCTGTCGAAATTGTCTCCACACCTGACAGAGTAGTGGAGAATCGTCAAGATGGTGCGTTGTACTGTGCCGTTGANAACCAAAAGACAATGTTGCCAACAGTCGTGAAATGAAGGATGTGAACGATGTTGGAATGACAGATGCATGTATTCGAATGATGAATGCTGCTGGT] [+] EMBL CD188622 [GTTATTCGATTACCTGAAAAATTGCTGTGAACAAGTTAGGTGATAATGTTTGGACAATGAAAGTGATTCACCTCAGAGTTCTTAGTAGCTGCTTTACTGAATGGTCGACATGAATTCATCTTTTTTTACAATACGCTTGCAACGAATGAAGATGTAAAGGACTCACTATCGAATTTGGCTGATGATTTGGGATGCATTCTGTTTGACCATTTACGACAAGTAGATGCGGACTTCAATTTTATGTTACCTGTCACTGCGACATACGATCTAGACACTCGACTCATGTTGATGCTTGACAGGAGTATGATGCCTGAGTCCAACACGGACGATTCCACACGTGTTAAGACTGCGTGGGTGACGTTAGCCGCAATGGCCTCTGCTTACATCTTCAAAAATGTTGGAGAATCGGTTTCCAAACCTCTTCGAAAATGGCTGGCGAATGCTGCCAGTGCTGCGATTCTCGCAGGACTACTTGCAGAAGTTCCCGAGTCGTCGGAACAGATGAACAAACCACTTCTGATGGACACGCGCCTGTCGAAATTGTCTCCACACCTGACAGAGTAGTGGAGAATCGTCAAGATGGTGCGTTGTACTGTGCCGTTGANAACCAAAAGACAATGTTGCCAACAGTCGTGAAATGAAGGATGTGAACGATGTTGGAATGACAGATGCATGTATTCGAATGATGAATGCTGCTGGT] consensusID : consensus_7609#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 619 fasta sequence [AAAATGGCTGGCGAATGCTGCCAGTGCTGCGATTCTCGCAGGACTACTTGCAGAAGTTCCCGAGTCGTCGGATTCAAATGAACGAACTACTTCTGATGGAGACGCGCCTGTCGAAAATGTCTCCACACCTGACAGAGTAGTGGAGAATCGTCAAGATGGTGCGTGGTACTATGGCCGTTGGACCGTTGACAATGTTGCCAACAGTCGTGAAATGATGGATGTGATCGATGTTGGAATGACAGATGCATGTATTCGAGTGATGATTGCTGCAGTTGTTAATTATTTCCAGGAGAACAGATTCGCACCGTGTGGGTTGTTGAGAGACAGTTATGCAAGTGAGATACTGAGAAGTGACCTAATGGATAAGCATGGATTAACAGACAAACGTGATAAAATTGAAGCGATGCGTATCACTGGTTATTGGGTCTCGAGACTCTATGTGTTTCATATGGCGACGAAGCATCGTGATTTGGAACATCCAATCAGACCCATAAATAACGTTGGTCTGGTGCGTCCTCTGAAACTAGATATCTGTCAGTATTTCGAGGACTTGACAGCTAGATTTATCCGTACACGAATCGCGCATCAGATTGCCAGTCGAATGGTCCGATCTGTGTGT] [+] EMBL CD139790 [AAAATGGCTGGCGAATGCTGCCAGTGCTGCGATTCTCGCAGGACTACTTGCAGAAGTTCCCGAGTCGTCGGATTCAAATGAACGAACTACTTCTGATGGAGACGCGCCTGTCGAAAATGTCTCCACACCTGACAGAGTAGTGGAGAATCGTCAAGATGGTGCGTGGTACTATGGCCGTTGGACCGTTGACAATGTTGCCAACAGTCGTGAAATGATGGATGTGATCGATGTTGGAATGACAGATGCATGTATTCGAGTGATGATTGCTGCAGTTGTTAATTATTTCCAGGAGAACAGATTCACACCGTGTGG ] [+] EMBL CD144301 [ ATGACAGATGCATGTATTCGAGTGATGATTGCTGCTGTTGTTAATTATTTCCAGGAGAACAGATTCGCACCGTGTGGGTTGTTGAGAGACAGTTATGCAAGTGAGATACTGAGAAGTGACCTAATGGATAAGCATGGATTAACAGACAAACGTGATAAAATTGAAGCGATGCGTATCACTGGTTATTGGGTCTCGAGACTCTATGTGTTTCATATGGCGACGAAGCATCGTGATTTGGAACATCCAATCAGACCCATANATAACGTTGGTCTGGTGCGTNCTCTGAAACTAGATATCTGTCAGTA ] [+] EMBL CD063428 [ CGCACCGTGTGGGTTGTTGAGAGACAGTTATGCAAGTGAGATACTGAGAAGTGACCTAATGGATAAGCATGGATTAACAGACAAACGTGATAAAATTGAAGCGATGCGTATCACTGGTTATTGGGTCTCGAGACTCTATGTGTTTCATATGGCGACGAGGCATCGTGATTTGGAACATCCAATCAGACCCATAAATAACGTTGGTCTGGTGCGTCCTCTGAAACTAGATATCTGTCAGTATTTCGAGGACTTGACAGCTAGATTTATCCGTACACGAATCGCGCATCAGATTGCCAGTCGAATGGTCCGATCTGTGTGT] [+] EMBL CD139693 [ TGAGAAGTGACCTAATGGATAAGCATGGATTAACAGACGAACGTGATAAAATTGAAGCGATGCGTATCACTGGTTATTGGGTTTCGAGACTCTATGTGTTACATATGGCGACGAAGCATCGTAATCTGGAACACCCAATCAGACCCATAAATAACGTTGGTCTGGTGCGTCCTCTGAAACTAGATATCTGTCAGTATTTCGAGGACTTGACAGCTAGATTTATCCGTACACGAATCGCGCATCAGATTGCCAGTCGAATGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7609#0 GTTATTCGATTACCTGAAAAATTGCTGTGAACAAGTTAGGTGATAATGTTTGGACAATGA 60 consensus_7609#1 ------AAAATGGCTGGCGAAT-GCTG----CCAGTGCTGCGATTCTCGCAGGACTACTT 49 * * *** *** **** * *** * *** * **** * consensus_7609#0 AAGTGATTCACCTCAGAGTTCTTAGTAGCTGCTTTACTGAATGGTCGACATGAATTCATC 120 consensus_7609#1 GCAGAAGTTCCC---GAGTCGTCGGATTCAAATGAACGAACTACTTCTGATGGAGACGCG 106 * * ** **** * * * * ** * * * *** * * consensus_7609#0 TTTTTTTACAATACGCTTGCAACGAATGAAGATGTAAAGGACTCACTATCGAATTTGGCT 180 consensus_7609#1 CCTGTCGAAAATGTCTCCACACCTGACAGAGTAGTGGAGAATCGTCAA--GATGGTGCGT 164 * * * *** ** * * ** ** ** * * * ** ** * consensus_7609#0 GATGATTTGGGATGCATTCTGTTTGACCATTTACGACAAGTAGATGCGGACTTCAATTTT 240 consensus_7609#1 GGTACTATGG--------CCGTTGGACCGTTGACAAT-----GTTGCCAACAGTCGTGAA 211 * * * *** * *** **** ** ** * * *** ** * consensus_7609#0 ATGTTACCTGTCACTGCGACATACGATCTAGACACTCGACTCATGTTGATGCTTGACAGG 300 consensus_7609#1 ATGATGGATGTGATCGATGTTGGAATGACAGATGCATGTATTCGAGTGATGATTG-CTGC 270 *** * *** * * *** * * * ***** *** * * consensus_7609#0 AGTATGATGCCTGAGTCCAACACGGACGATTCCACACGTGTTAAGACTGCGTGGGTGAC- 359 consensus_7609#1 AGT-TGTTAATTATTTCCAGGA-GAACAGATTCGCAC-CGTGTGGGTTGT-TGAGAGACA 326 *** ** * * **** * * ** * * *** ** * ** ** * *** consensus_7609#0 GTTAGCCGCAATGGCCTCTGCTTA-CATCTTCAAAAATGTTGGAGAATCGGTTTCCAAAC 418 consensus_7609#1 GTTATGCAAGTGAGATACTGAGAAGTGACCTAATGGATAAGCATGGATTAACAGACAAAC 386 **** * * *** * * * * ** * ** ***** consensus_7609#0 CTCTTCGAAAATGGCTGGCGAATGCTGCCAGTGCTGCGATTCTCGCAGGACTACTTGCAG 478 consensus_7609#1 GTGATAAAATTGAAGCGATGCGTATCACTGGTTAT-TGGGTCTCGAGACTCTATGTGT-- 443 * * ** * * * * ** * * ***** *** ** consensus_7609#0 AAGTTCCCGAGTCGTCGGAACAGATGAACAAACCACTTCTGAT-GGACACGCGCCTGTCG 537 consensus_7609#1 ---TTCATATGGCGACGAAGCATCGTGATTTGGAACATCCAATCAGACCCATAAATAACG 500 *** * ** ** * ** * ** ** ** *** * * ** consensus_7609#0 AAATTGTCTCCACACCTGACAGAGTAGTGGAGAATCGTCAAGATGGTGCGTTGTACTGTG 597 consensus_7609#1 ---TTGGTCTGGTGCGTCCTCTGAAACTAGATATCTGTCAGTATTTCGAGGACTTGACAG 557 *** * * * * ** * **** ** * * * * consensus_7609#0 CCGTTGANAACCAAAAGACAATGTTGCCAACAGTCGTGAAATGAAGGATGTGAACGATGT 657 consensus_7609#1 CTAGATTTATCCGTACACGAATCGCGCATCAGATTGCCAGTCGAATGGTCCGATCTGTGT 617 * * ** * *** ** * * * *** * * ** * *** consensus_7609#0 TGGAATGACAGATGCATGTATTCGAATGATGAATGCTGCTGGT 700 consensus_7609#1 GT----------------------------------------- 619 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||