cluster # 7614

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Schistosoma mansoni
cluster # 7614 cluster # 7614 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7614#0 length = 557 sequences # 2
consensus_7614#1 length = 544 sequences # 1

consensus_7614#2 length = 517 sequences # 1
consensus_7614#3 length = 430 sequences # 1

consensusID : consensus_7614#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 557
fasta sequence

                              [TGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGAGTCTGTCAATTTTCTAATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACCTATGA]

[+] EMBL CD148605             [TGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATT                                                                                                                                                                                                                                                                   ]
[-] EMBL CD090424             [                                                                                                                                                       taTTGTGTGATTTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGCGAACTTGATTTTGGATTGGCATATCGAGATTGTCTATTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGAGTCTGTCAATTTTCTAATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACCTATGA]




>consensus_7614#0
TGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTAGATTGAGTAG
TTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCT
ATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGT
TCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGA
GTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGT
GCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGA
GGTGAGTCTGTCAATTTTCTAATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAG
TGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATT
GGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTT
GAGTTTTCTACCTATGA

consensusID : consensus_7614#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 544
fasta sequence

                              [TTCTCCAGGGGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGTTTGGATGATGCTAGATAACAGTGTTGAGTAATGATTTTCACCAGGATCTCTGAGGAACAGTCCTAATGATTGTTTTTGTTTGACAGGTGATAGTGTGTGGATCGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGAT]

[-] EMBL CD146539             [TTCTCCAGGGGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGTTTGGATGATGCTAGATAACAGTGTTGAGTAATGATTTTCACCAGGATCTCTGAGGAACAGTCCTAATGATTGTTTTTGTTTGACAGGTGATAGTGTGTGGATCGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGAT]




>consensus_7614#1
TTCTCCAGGGGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTG
TGAGTTTGGATGATGCTAGATAACAGTGTTGAGTAATGATTTTCACCAGGATCTCTGAGG
AACAGTCCTAATGATTGTTTTTGTTTGACAGGTGATAGTGTGTGGATCGATGGTATTGGA
TCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATG
TGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGG
TGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAA
AAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTT
TGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGT
TGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATT
GGAT

consensusID : consensus_7614#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence

                              [GTCACGATGATACCGTTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAGAGAGACAGTGAGAAGCAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGAGTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATCGGTTTAATATTTTAATATATCCAAATAAATTTTCATATATAATAAAGTAAACCTTGATAGCAATCTAGTTGGAAACAATATAGTGAGGCGGCCTGAGTGAATATCTGGACTACCTGTTCCTACCATCTAGATATTTCAACAAGTTATCTTTATTGCTTGTTTTAAAACTTTAATATGTTTATTATTCACATTACAAATTCAGGCCCGTAAATAAAACGTTTACAACCTATCGCTTTACAAGGTACTAAAAAGTACAATCAGAGACATCGTAGTGTCTGACAATGTGAATAGGAAAAAATGAACATTAATCACATGTCGATTCCTC]

[-] EMBL CD084700             [GTCACGATGATACCGTTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAGAGAGACAGTGAGAAGCAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGAGTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATCGGTTTAATATTTTAATATATCCAAATAAATTTTCATATATAATAAAGTAAACCTTGATAGCAATCTAGTTGGAAACAATATAGTGAGGCGGCCTGAGTGAATATCTGGACTACCTGTTCCTACCATCTAGATATTTCAACAAGTTATCTTTATTGCTTGTTTTAAAACTTTAATATGTTTATTATTCACATTACAAATTCAGGCCCGTAAATAAAACGTTTACAACCTATCGCTTTACAAGGTACTAAAAAGTACAATCAGAGACATCGTAGTGTCTGACAATGTGAATAGGAAAAAATGAACATTAATCACATGTCGATTCCTC]




>consensus_7614#2
GTCACGATGATACCGTTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACA
GAAGAGAGACAGTGAGAAGCAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAG
AGTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCG
TGATGGTCGATCGGTTTAATATTTTAATATATCCAAATAAATTTTCATATATAATAAAGT
AAACCTTGATAGCAATCTAGTTGGAAACAATATAGTGAGGCGGCCTGAGTGAATATCTGG
ACTACCTGTTCCTACCATCTAGATATTTCAACAAGTTATCTTTATTGCTTGTTTTAAAAC
TTTAATATGTTTATTATTCACATTACAAATTCAGGCCCGTAAATAAAACGTTTACAACCT
ATCGCTTTACAAGGTACTAAAAAGTACAATCAGAGACATCGTAGTGTCTGACAATGTGAA
TAGGAAAAAATGAACATTAATCACATGTCGATTCCTC

consensusID : consensus_7614#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [GTACCCCAAAAACTCTTGAGCTCACCCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGA]

[+] EMBL CD128752             [GTACCCCAAAAACTCTTGAGCTCACCCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGA]




>consensus_7614#3
GTACCCCAAAAACTCTTGAGCTCACCCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTA
CTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGA
GGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATG
TGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTG
GTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAAT
ACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATAT
CGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTT
CTACTTATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7614#1      TTCTCCAGGGGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTG 60
consensus_7614#3      ------------------------------------------------------------
consensus_7614#0      ------------------------------------------------------------
consensus_7614#2      ------------------------------------------------------------
                                                                                  

consensus_7614#1      TGAGTTTGGATGATGCTAGA---TAACAGTGTTGAGTAATGATTTTCACCAGGATCTCTG 117
consensus_7614#3      -GTACCCCAAAAACTCTTGAGCTCACCCGTGATGGTCGATGTAGTTGACTTGAGTTTTCT 59
consensus_7614#0      ------------------------------------------------------------
consensus_7614#2      ------------------------------------------------------------
                                                                                  

consensus_7614#1      AGGAACAGTCCTAATGATTGTTTTTGTTTGACAGGTGATAGTGTGTGGATCGATGGTATT 177
consensus_7614#3      A---------CTTATGAGTAATTGTG------AGGTGATAGTGTGTGGATTGATGGTATT 104
consensus_7614#0      --------------------------------TGTTGACT-TGAGTTTTCTACTTATGAG 27
consensus_7614#2      ------------------------------------------------------------
                                                                                  

consensus_7614#1      GGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCA 237
consensus_7614#3      GGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCA 164
consensus_7614#0      TAATTGTGAGGTGATAGTGTG---TAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCA 84
consensus_7614#2      ------------------------------------------------------------
                                                                                  

consensus_7614#1      ATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATAC 297
consensus_7614#3      ATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATAC 224
consensus_7614#0      ATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATAC 144
consensus_7614#2      -----------------------------------------------GTCACGATGATAC 13
                                                                     *************

consensus_7614#1      CGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGT 357
consensus_7614#3      CGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGT 284
consensus_7614#0      CGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGT 204
consensus_7614#2      CGTTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAGAGAGACAGT 73
                      ** *********************************************** *********

consensus_7614#1      GAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGA 417
consensus_7614#3      GAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGA 344
consensus_7614#0      GAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGA 264
consensus_7614#2      GAGAAGCAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGAGTGTGAACTTGA 133
                      ** ** ****************************************** ***********

consensus_7614#1      TTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGT 477
consensus_7614#3      TTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGT 404
consensus_7614#0      TTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGT 324
consensus_7614#2      TTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATCG 193
                      **********************************************************  

consensus_7614#1      AGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGT 537
consensus_7614#3      AGTTGACTTGAGTTTTCTACTTATGA---------------------------------- 430
consensus_7614#0      AGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTG--AGTCTGTCAATTTTCTAA 382
consensus_7614#2      GTTTAAT---ATTTTAATATATCCAAATAAATTTTCATATATAATAAAGTAAACCTTGAT 250
                        ** *    * ***  **  *   *                                  

consensus_7614#1      ATTGGAT----------------------------------------------------- 544
consensus_7614#3      ------------------------------------------------------------
consensus_7614#0      TTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAAC 442
consensus_7614#2      AGCAATCTAGT-TGGAAACAATATAGTGAGGCGGCCTGAGTGAATATCTGGACTACCTGT 309
                                                                                  

consensus_7614#1      ------------------------------------------------------------
consensus_7614#3      ------------------------------------------------------------
consensus_7614#0      ATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTG 502
consensus_7614#2      TCCTACCATCTAGATATTTCAACAAGTTATCTTTATTGCTTGTTTTAAAACTTTAATATG 369
                                                                                  

consensus_7614#1      ------------------------------------------------------------
consensus_7614#3      ------------------------------------------------------------
consensus_7614#0      ATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACCTATGA----- 557
consensus_7614#2      TTTATTATTCACATTACAAATTCAGGCCCGTAAATAAAACGTTTACAACCTATCGCTTTA 429
                                                                                  

consensus_7614#1      ------------------------------------------------------------
consensus_7614#3      ------------------------------------------------------------
consensus_7614#0      ------------------------------------------------------------
consensus_7614#2      CAAGGTACTAAAAAGTACAATCAGAGACATCGTAGTGTCTGACAATGTGAATAGGAAAAA 489
                                                                                  

consensus_7614#1      ----------------------------
consensus_7614#3      ----------------------------
consensus_7614#0      ----------------------------
consensus_7614#2      ATGAACATTAATCACATGTCGATTCCTC 517