These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7617#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 508 fasta sequence [TTTTTTTTTTTTTTTTTGATGTGAATATATGAATATATTGATACATATACAGATTCAGTTACTCAATAACATAGCGGAGTCATCAAAACCGTCCGGTAGTTCTTCCAGTGCCACGAACAGTTGCAACAC-GTCCACGAACAAAAGTGCCACGCCCGCGAACACCAGCCCTTAACATTGCATTCTTCCCTCTTCCCGTGCCTAATCCCTTGGCACCCTGTGGACGTTTCAACATAGGGGAGTTTTTCAGCATATCAGGAAGGATGAGGAAACGAATTTTACTGCCTCGAATATATACTTGTTGAAGGTTTGATGTACGACCGTCACGGGAAGTCATTATTAGGTCGCACATGTGAACATTCATATTATCTTCCGCTTCAACAAGTTTTCCACGAAAAACTTCGCCACTAACAGTTTCTAGAGTAACGACATGTCCCTCGGCATCATGCAAAACTTTGATAGGGATGCCAACTGACATTGCTTCCACGAAGTTCCAAAACCCGCGCTAATT] [+] EMBL AI395446 [TTTTTTTTTTTTTTTTTGATGTGAATATATGAATATATTGATACATATACAGATTCAGTTACTCAATAACATAGCGGAGTCATCAAAACCGTCCGGTAGTTCTTCCAGTGCCACGAACAGTTGCAACAC GTCCACGAACAAAAGTGCCACGCCCGCGAACACCAGCCCTTAACATTGCATTCTTCCCTCTTCCCGTGCCTAATCCCTTGGCACCCTGTGGACGTTTCAACATAGGGGAGTTTTTCAGCATATCAGGAAGGATGAGGAAACGAATTTTACTGCCTCGAATATATACTTGTTGAAGGTTTGATGTACGACCGTCACGGGAAGTCATTATTAGGTCGCACATGTGAACATTCATATTATCTTCCGCTTCAACAAGTTTTCCACGAAAAACTTCGCCACTAACAGTTTCTAGAGTA ] [+] EMBL CD146038 [ TTGCAACTCTGCCCACGAACAAAAGTGTCACGCCCGCGAACACCAGCCCTTAACATTGCATTCTTCCCTCTTCCCGTGCCTAATCCCTTGGCACCCTGTGGACGTTTCAACATAGGGGAGTTTTTCAGCATATCAGGAAGGATGAGGAAACGAATTTTACTGCCTCGAATATATACTTGTTGAAGGTTTGATGTACGACCGTCACGGGAAGTCATTATTAGGTCGCACATGTGAACATTCATATTATCTTCCGCTTCAACAAGTTTTCCACGAAAAACTTCGCCACTAACAGTTTCTAGAGTAACGACATGTCCCTCGGCATCATGCAAAACTTTGATAGGGATGCCAACTGACATTGCTTCCACGAAGTTCCAAAACCCGCGCTAATT] [-] EMBL CD185340 [ CTCTTCCCGTGCCTAATCCCTTGGCACCCTGTGGACGTTTCAACATAGGGGAGTTTTTCAGCATATCAGGAAGGATGAGGAAACGAATTTTACTGCCTCGAATATATACTTGTTGAAGGTTTGATGTACGACCGTCACGGGAAGTCATTATTAGGTCGCACATGTGAACATTCATATTATCTTCCGCTTCAACAAGTTTTCCACGAAAAACTTCGCCACTAACAGTTTCTAGAGTAACGACATGTCCCTCGGCATCATGCAAAACTTTGATAGGGATGCCAACTGACATTGCTTCCA ] [+] EMBL CD154290 [ GGGGAGTTTTTCAGCATATCAGGAAGGATGAGGAAACGAATTTTACTGCCTCGAATATATACTTGTTGAAGGTTTGATGTACGACCGTCACGGGAAGCCATTATTAGGTCGCACATGTGAACATTCATATTATCTTCCGCTTCAACAAGTTTTCCACGAAAAACTTCGCCACTAACAGTTTCTA ] consensusID : consensus_7617#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [TGGTTGGTGATTTGAGGGTGGACGCAATCGACGTTGGTTTTACATTAGATGACGAATGAGAAGCAGACAATGAGAAGACATGCGGAATGATGTGAATATATGAATATATTGATACATATACAGATTCAGGTACTCAATAACATAGCGGAGTCATCAAAACCGTCCGGTAGTTCTTCCAGTGCCACGAACAGTTGCAACACGTCCACGAACAAAAGTGCCACGCCCGCGAACACCAGCCCTTAACATTGCATTCTTCCCTCTTCCCGTGCCCAATCCCTTGGCACCCTGTGGACGT] [-] EMBL CD141203 [TGGTTGGTGATTTGAGGGTGGACGCAATCGACGTTGGTTTTACATTAGATGACGAATGAGAAGCAGACAATGAGAAGACATGCGGAATGATGTGAATATATGAATATATTGATACATATACAGATTCAGGTACTCAATAACATAGCGGAGTCATCAAAACCGTCCGGTAGTTCTTCCAGTGCCACGAACAGTTGCAACACGTCCACGAACAAAAGTGCCACGCCCGCGAACACCAGCCCTTAACATTGCATTCTTCCCTCTTCCCGTGCCCAATCCCTTGGCACCCTGTGGACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7617#0 ------------------------------------------------------------ consensus_7617#1 TGGTTGGTGATTTGAGGGTGGACGCAATCGACGTTGGTTTTACATTAGATGACGAATGAG 60 consensus_7617#0 -----------TTTTTTTTTTTTTTTTTGATGTGAATATATGAATATATTGATACATATA 49 consensus_7617#1 AAGCAGACAATGAGAAGACATGCGGAATGATGTGAATATATGAATATATTGATACATATA 120 * ********************************* consensus_7617#0 CAGATTCAGTTACTCAATAACATAGCGGAGTCATCAAAACCGTCCGGTAGTTCTTCCAGT 109 consensus_7617#1 CAGATTCAGGTACTCAATAACATAGCGGAGTCATCAAAACCGTCCGGTAGTTCTTCCAGT 180 ********* ************************************************** consensus_7617#0 GCCACGAACAGTTGCAACACGTCCACGAACAAAAGTGCCACGCCCGCGAACACCAGCCCT 169 consensus_7617#1 GCCACGAACAGTTGCAACACGTCCACGAACAAAAGTGCCACGCCCGCGAACACCAGCCCT 240 ************************************************************ consensus_7617#0 TAACATTGCATTCTTCCCTCTTCCCGTGCCTAATCCCTTGGCACCCTGTGGACGTTTCAA 229 consensus_7617#1 TAACATTGCATTCTTCCCTCTTCCCGTGCCCAATCCCTTGGCACCCTGTGGACGT----- 295 ****************************** ************************ consensus_7617#0 CATAGGGGAGTTTTTCAGCATATCAGGAAGGATGAGGAAACGAATTTTACTGCCTCGAAT 289 consensus_7617#1 ------------------------------------------------------------ consensus_7617#0 ATATACTTGTTGAAGGTTTGATGTACGACCGTCACGGGAAGTCATTATTAGGTCGCACAT 349 consensus_7617#1 ------------------------------------------------------------ consensus_7617#0 GTGAACATTCATATTATCTTCCGCTTCAACAAGTTTTCCACGAAAAACTTCGCCACTAAC 409 consensus_7617#1 ------------------------------------------------------------ consensus_7617#0 AGTTTCTAGAGTAACGACATGTCCCTCGGCATCATGCAAAACTTTGATAGGGATGCCAAC 469 consensus_7617#1 ------------------------------------------------------------ consensus_7617#0 TGACATTGCTTCCACGAAGTTCCAAAACCCGCGCTAATT 508 consensus_7617#1 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||