These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7620#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 683 fasta sequence [GAGCCATATTCGGCACGAGGCTTGTGGAGCAGTTGTAATCGCCTGTCTTTAAACAAATGGATGTTATTTTGTTTCGGAAGACTATTTGTTGTTATTCAAATGGTACTGGGATCTGCTTCATTTGTACATTTCAACATGATTGGACTTAAAGTTTTGAAAGCGAAAGATTTCTTCTACATCAAACCTTATGAATCGGGTTATATTGAATTCGTATGGAGTGCAGTAAGCGAGTGGTGCGTTGTTATGGGTTGTGCAGAATTAACATTTATCATTGCTTTGGAACTCTATGATTTTGAAAAATCGGTTGTCAATTTAGAAGGAATTCCATATCTAAATGTGTAATCGGTTAAAAAACCAAAGTTATGAAGAATTTATTTTTGGATTATTTTGAGAGATCTGTTGATGAAAGTTTTATGAAGATCCAGAATTTCTGGTTAAAGATATTGTACATAACTGACCATTTAAAACCTCTTAGCTGAAATATGTAAAGCTCTTAAAAGCTAGAAATTGTGTTAAGGAA-TTCATACATTCATTTTG-GTTTTATCAATACTATTTATCAAATGTTTTCTATGGAAATGTTAATTGTATATTGTATCAACTATGAACTTGTAGTTATCAAAATGTTTTGATGACAATAACTTGTACAGTATTGGGGGATTATTTAAGTATCAAATAAAATAAAT] [+] EMBL CD081624 [GAGCCATATTCGGCACGAGGCTTGTGGAGCAGTTGTAATCGCCTGTCTTTAAACAAATGGATGTTATTTTGTTTCGGAAGACTATTTGTTGTTATTCAAATGGTACTGGGATCTGCTTCATTTGTACATTTCAACATGATTGGACTTAAAGTTTTGAAAGCGAAAGATTTCTTCTACATCAAACCTTATGAATCGGGTTATATTGAATTCGTATGGAGTGCAGTAAGCGAGTGGTGCGTTGTTATGGGTTGTGCAGAATTAACATTTATCATTGCTTTGGAACTCTATGATTTTGAAAAATCGGTTGTCAATTTAGAAGGAATTCCATATCTAAATGTGTAATCGGTTAAAAAACCAAAGTTATGAAGAATTTATTTTTGGATTATTTTGAGAGATCTGTTGATGAAAGTTTTATGAAGATCCAGAATTTCTGGTTAAAGATATTGTACATAACTGACCATTTAAAACCTCTTAGCTGAAATATGTAAAGCTCTTAAAAGCTAGAAATTGTGTTAAGGAA TTCATACATTCATTTTG GTTTTATCAATACTATTTATCAAATGTTTTCTATGGAAATGTTAATTGTATATTGTATCAACTATGAACTTGTAGTTATCAAAATGTTTTGATGACAATAACTTGTACAGTATTGGGGGATTATTTAAGTATCAAATAAAATAAA ] [-] EMBL CD075446 [ GAAGACTATTGTTTGTTATTCAAATGGTACTGGGATCTGCTTCATTTGTACATTTCAACATGATTGGACTTAAAGTTTTGAAAGCGAAAGATTTCTTCTACATCAAACCTTATGAATCGGGTTATATTGAATTCGTATGGAGTGCAGTAAGCGAGTGGTGCGTTGTTATGGGTTGTGCAGAATTAACATTTATCATTGCTTTGGAACTCTATGATTTTGAAAAATCGGTTGTCAATTTAGAAGGAATTCCATATCTAAATGTGTAATCGGTTAAAAAACCAAAGTTATGAAGAATTTATTTTTGGATTATTTTGAGAGATCTGTTGATGAAAGTTTTATGAAGATCCAGAATTTCTGGTTAAAGATATTGTACATAACTGACCATTTAAAACCTCTTAGCTGAAATATGTAAAGCTCTTAAAAGCTAGAAATTGTGTTAAGGAA TTCATACATTCATTTTG GTTTTATCAATACTATTTATCAAATGTTTTCTATGGAAATGTTAATTGTATATTGTATCAACTATGAACTTGTAGTTATCAAAATGTTTTGATGACAATAACTTGTACAGTATTGGGGGATTATTTAAGTATCAAATAAAATAAAT] [-] EMBL SMAA40606 [ AGCNCTTAAAAGCTAGAAATTGTGTTAAGGAACGTCATACATTCATTTTGNGTTTTATCAATACTATTTATCAAATGTTTTCTATGGAAATGTTAATTGTATATTGTATCAACTATG ACTTGTAGTNA CAAAATG TTTGATGTCAATAACT ] consensusID : consensus_7620#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 398 fasta sequence [GATTTGGTGTTGGAAAGCTGGCCTTCAAATAACAAAAATAAGAAGATCAATAATTCTTCATTTTATACTTGTAATTGTTTTCATTTTTATGACGATAGCTGGGATGAGCATAGTGGGACTTTCTTTTGTTAACACAAAAGAGAACAACGCTGAACATTATCATTTGACTTTAGTGAATTTCATTTGTCACGTTATTGCAATTCCTTGTGGAGCAGTTGTAATCGCCTGTCTTTCAAACAAATGGATGTTATTTTGTTTCGGAAGACTATTAGTTGTTATTCAAATGGTACTGGGATCTGCTTCATTTGTACATTTCAACATGATTGGACTTAAAGTTTTGAAAGCGAAAGATTTCTTCTACATCAAACTTTATGAATCGGGTTATATTGAATTCGTAT] [+] EMBL CD190810 [GATTTGGTGTTGGAAAGCTGGCCTTCAAATAACAAAAATAAGAAGATCAATAATTCTTCATTTTATACTTGTAATTGTTTTCATTTTTATGACGATAGCTGGGATGAGCATAGTGGGACTTTCTTTTGTTAACACAAAAGAGAACAACGCTGAACATTATCATTTGACTTTAGTGAATTTCATTTGTCACGTTATTGCAATTCCTTGTGGAGCAGTTGTAATCGCCTGTCTTTCAAACAAATGGATGTTATTTTGTTTCGGAAGACTATTAGTTGTTATTCAAATGGTACTGGGATCTGCTTCATTTGTACATTTCAACATGATTGGACTTAAAGTTTTGAAAGCGAAAGATTTCTTCTACATCAAACTTTATGAATCGGGTTATATTGAATTCGTAT] [-] EMBL CD128364 [ ATTTCATTTGTCACGTTATTGCAATTCCTTGTGGAGCAGTTGTAATCGCCTGTCTTTCAAACAAATGGATGTTATTTTGTTTCGGAAGACTATTTGTTGTTATTCAAATGGTACTGGGATCTGCTTCATTTGTACATTTCAACATG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7620#0 GAGCCATATTCGGCACGAGGCTTGTGGAGCAGTTGTAATCGCCTGTCTTTAAACAAATGG 60 consensus_7620#1 ------------------------------------------------------------ consensus_7620#0 ATGTTATTTTGTTTCGGAAGACTATTTGTTGTTATTCAAATGGTACTGGGATCTGCTTCA 120 consensus_7620#1 ----------------------------------------------------------GA 2 * consensus_7620#0 TTTGTACATTTCAACATGATTGGACTTAAAGTTTTGAAAGCGA-AAGATTTCTTCTACAT 179 consensus_7620#1 TTTG-GTGTTGGAA---AGCTGGCCTTCAAATAACAAAAATAAGAAGATCAATAATTCTT 58 **** ** ** *** *** ** * *** * ***** * * * * consensus_7620#0 CAAACCTTATGAATCGGGTTATATTGAATTCGTATGGAGTGCAGTAAGCGAGTGGTGCGT 239 consensus_7620#1 C--ATTTTATACTTGTAATTGTTTTCA-TTTTTATGA----CGATAGCTGGGATGAGCAT 111 * * **** * ** * ** * ** **** * ** * * * ** * consensus_7620#0 TGTTATGGGTTGTGCAGAATTAACATTTATCATTGCTTTG--GAACTCTATGATTTTGAA 297 consensus_7620#1 AGT--GGGACTTTCTTTTGTTAACACAAAAGAGAACAACGCTGAACATTATCATTTGACT 169 ** ** * * ****** * * * * **** *** **** consensus_7620#0 AAATCGGTTGTCAATTTAGAAGGAATTCCATATCTAAATGTGTAATCGGTTAAAAAACCA 357 consensus_7620#1 TTAGTGAATTTCATTTGTCACGTTATTGCAATTCCT--TGTGGAGCAGTTGTAATCGCCT 227 * * * *** ** * * *** ** ** **** * * * ** ** consensus_7620#0 AAGTTATGAAGAATTTATTTTTGGATTATTTTGAGAGATCTGTTGATGAAAGTTTTATGA 417 consensus_7620#1 GTCTTTCAAACAAATGGATGTTATTTTGTTTCGGAAGA-CTATTAGTTGTTATTCAAATG 286 ** ** ** * * ** ** *** * *** ** ** * ** * consensus_7620#0 AGATCCAGAATTTCTGGTTAAAGATATTGTA-CATAACTGACCATTTAAAACCTCTTAGC 476 consensus_7620#1 GTACTGGGATCTGCTTCATTTGTACATTTCAACATGATTGG--ACTTAAAGTTTTGAAAG 344 * ** * ** * * *** * *** * ** * ***** * * consensus_7620#0 TGAAATATGTAAAGCTC-TTAAAAGCTAGAAATTGTGTTAAG--GAATTCATACATTCAT 533 consensus_7620#1 CGAAAGATTTCTTCTACATCAAACTTTATGAATCGGGTTATATTGAATTCGTAT------ 398 **** ** * * * *** ** *** * **** ****** ** consensus_7620#0 TTTGGTTTTATCAATACTATTTATCAAATGTTTTCTATGGAAATGTTAATTGTATATTGT 593 consensus_7620#1 ------------------------------------------------------------ consensus_7620#0 ATCAACTATGAACTTGTAGTTATCAAAATGTTTTGATGACAATAACTTGTACAGTATTGG 653 consensus_7620#1 ------------------------------------------------------------ consensus_7620#0 GGGATTATTTAAGTATCAAATAAAATAAAT 683 consensus_7620#1 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||