These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7624#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 325 fasta sequence [ATTTTTTTCGCACCGAAAATTTTTTGGGCAACCCGGGAACGGTGTGAGAACGATACTGTTGACGCCACGACTAGTGAGAGGTGCGAATCCAGGCATGAAGAAGTGGAGAC-GTGGG-AT-GGCACCATGTTCACAGCGAGTTTCCTCAAGTCAGCATTGAGTTGACCAGGGAATCTGAGACATGTTGTCACTCCTGACATAGTTGCACTGACCAAGTGGTTCAAGTCTCCATAGGTGGGTGTGGTGAGTTTCAGAGTACGGAAGCATATGTCGTAGAGTGCTTCGTTGTCAACGCAACACTCTCTGTTCACCAACTCGTAGAGAACAC] [-] EMBL AW062998 [ATTTTTTTCGCACCGAAAATTTTTTGGGCAACCCGGGAACGGTGTGAGAACGATACTGTTGACGCCACGACTAGTGAGAGGTGCGAATCCAGGCATGAAGAAGTGGAGAC GCGGA ATAGGCACCATGTTCACAGCGAGTTTCTTCAAGTCAGCATTGAGTTGACCAGGGAATCTGAGACATGTTGTCACTCCTGACATAGTTGCACTGACCAAGTGGTTCAAGTCTCCATAGGTGGGTGTGGTGAGTTTCAGA ] [+] EMBL CD166659 [ AGAAGTGGAGACNGTGGG AT GGCACCATGATCACAGCGAGTTTCCTCAAGTCAGCATTGAGTTGACCA GGAATCTGAGACATGTTGTCACTCCTGACATAGTTGCACTGACCAAGTGGTTCAAGTCTCCATAGGTGGGTGTGGTGAGTTTCAGAGTACGGAAGCATATGTCGTAGAGTGCTTCGTTGTCAACGCAACACTCTCTGTTCACCAACTCGTAGAGAACAC] [-] EMBL CD063637 [ AGAC GTGGGAAT GGCACCATGTTCACAGCGAGTTTCCTCAAGTCAGCATTGAGTTGACCAGGGAATCTGAGACATGTTGTCACTCCTGACATAGTTGCACTGACCAAGTGGTTCAAGTCTCCATAGGTGGGTGTGGTGAGTTTCAGAGTACGGAAGCATATGTCGTAGAGTGCTT ] consensusID : consensus_7624#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence [TCCCACGTTCTCCACTTCTTCATGCCTGGATTCGCACCTCTCACTAGTCGTGGCAGTCAACAGTATCGTTCTCTCACCGTTCCCGAGTTGACTCAACAGATGTTCGATGCGAAGAACATGACGGCTGCATGCGATCCACGTCATGGACGATATCTCACAGTGGCTGCAATATTTCGAGGTCGTATGTCGATGAAGGAGGTTGATGAGCAGATGCTCAACGTACAGAACAAGAACTCGAGCTATTTCGTTGAATGGATACCGAACAATGTGAAGACGGCAGTGTGTGGACATTCCACCAAGAGGTC] [+] EMBL CD135493 [TCCCACGTTCTCCACTTCTTCATGCCTGGATTCGCACCTCTCACTAGTCGTGGCAGTCAACAGTATCGTTCTCTCACCGTTCCCGAGTTGACTCAACAGATGTTCGATGCGAAGAACATGACGGCTGCATGCGATCCACGTCATGGACGATATCTCACAGTGGCTGCAATATTTCGAGGTCGTATGTCGATGAAGGAGGTTGATGAGCAGATGCTCAACGTACAGAACAAGAACTCGAGCTATTTCGTTGAATGGATACCGAACAATGTGAAGACGGCAGTGTGTGGACATTCCACCAAGAGGTC] consensusID : consensus_7624#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 126 fasta sequence [TCTTGATTGGAAAAACCTTGGGGCTCTCACCGTTCCCGAGTTGACTCAACAGATGTTCGATGCGAAGAACATGATGGCTGCATGCGATCCACGTCATGGACGATATCTCACAGTGGCTGCAATATT] [+] EMBL CD135651 [TCTTGATTGGAAAAACCTTGGGGCTCTCACCGTTCCCGAGTTGACTCAACAGATGTTCGATGCGAAGAACATGATGGCTGCATGCGATCCACGTCATGGACGATATCTCACAGTGGCTGCAATATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7624#1 ------------------------TCCCACGTTCTCCACTTCTTCATGCCTGGATTCGCA 36 consensus_7624#2 ------------------------------------------------------------ consensus_7624#0 ATTTTTTTCGCACCGAAAATTTTTTGGGCAACCCGGGAACGGTGTGAGAACGATACTGTT 60 consensus_7624#1 CCTCTCACTAGTCGTGGCAGTCAACAGTATCGTTCTCTCACCGTTCCCGAGTTGACTCAA 96 consensus_7624#2 -----------TCTTGATTGGAAAAACCTTGGGGCTCTCACCGTTCCCGAGTTGACTCAA 49 consensus_7624#0 GACGCCACGACTAGTGAGAGGTGCGAATCCAGGCATGAAGAAGTGGAGACGTGGGATGGC 120 * ** * * * * ** ** * * consensus_7624#1 CAGATGTTCGATGCGAAGAACATGACGGCTGCATGCGAT---CCACGTCATGGACGATAT 153 consensus_7624#2 CAGATGTTCGATGCGAAGAACATGATGGCTGCATGCGAT---CCACGTCATGGACGATAT 106 consensus_7624#0 ACCATGTTCACAGCGAGTTTCCTCAAGTCAGCATTGAGTTGACCAGGGAATCTGAGACAT 180 ****** **** * * * * * **** * *** * ** ** ** consensus_7624#1 CTCACAGTGGCTGCAATATTTCGAGGTCGTATGTCGATGAAGGAGGTTGATGAGCAGATG 213 consensus_7624#2 CTCACAGTGGCTGCAATATT---------------------------------------- 126 consensus_7624#0 GTTGTCACTCCTGACATAGTTGCACTGACCAAGTGGTTCAAGTCTCCATAGGTGGGTGTG 240 * *** *** * consensus_7624#1 CTCAACGTACAGAACAAGAACTCGAGCTATTTCGTTGAATGGATACCGAACAATGTGAAG 273 consensus_7624#2 ------------------------------------------------------------ consensus_7624#0 GTGAGT-TTCAGAGTACGGAAGCA---TATGTCGTAGAGTGCTTCGTTGTCAACGCAACA 296 consensus_7624#1 ACGGCAGTGTGTGGACATTCCACCAAGAGGTC 305 consensus_7624#2 -------------------------------- consensus_7624#0 CTCTCTGTTCACCAACTCGTAGAGAACAC--- 325 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||