cluster # 7624

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Schistosoma mansoni
cluster # 7624 cluster # 7624 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7624#0 length = 325 sequences # 3

consensus_7624#1 length = 305 sequences # 1
consensus_7624#2 length = 126 sequences # 1

consensusID : consensus_7624#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 325
fasta sequence

                              [ATTTTTTTCGCACCGAAAATTTTTTGGGCAACCCGGGAACGGTGTGAGAACGATACTGTTGACGCCACGACTAGTGAGAGGTGCGAATCCAGGCATGAAGAAGTGGAGAC-GTGGG-AT-GGCACCATGTTCACAGCGAGTTTCCTCAAGTCAGCATTGAGTTGACCAGGGAATCTGAGACATGTTGTCACTCCTGACATAGTTGCACTGACCAAGTGGTTCAAGTCTCCATAGGTGGGTGTGGTGAGTTTCAGAGTACGGAAGCATATGTCGTAGAGTGCTTCGTTGTCAACGCAACACTCTCTGTTCACCAACTCGTAGAGAACAC]

[-] EMBL AW062998             [ATTTTTTTCGCACCGAAAATTTTTTGGGCAACCCGGGAACGGTGTGAGAACGATACTGTTGACGCCACGACTAGTGAGAGGTGCGAATCCAGGCATGAAGAAGTGGAGAC GCGGA ATAGGCACCATGTTCACAGCGAGTTTCTTCAAGTCAGCATTGAGTTGACCAGGGAATCTGAGACATGTTGTCACTCCTGACATAGTTGCACTGACCAAGTGGTTCAAGTCTCCATAGGTGGGTGTGGTGAGTTTCAGA                                                                         ]
[+] EMBL CD166659             [                                                                                                  AGAAGTGGAGACNGTGGG AT GGCACCATGATCACAGCGAGTTTCCTCAAGTCAGCATTGAGTTGACCA GGAATCTGAGACATGTTGTCACTCCTGACATAGTTGCACTGACCAAGTGGTTCAAGTCTCCATAGGTGGGTGTGGTGAGTTTCAGAGTACGGAAGCATATGTCGTAGAGTGCTTCGTTGTCAACGCAACACTCTCTGTTCACCAACTCGTAGAGAACAC]
[-] EMBL CD063637             [                                                                                                          AGAC GTGGGAAT GGCACCATGTTCACAGCGAGTTTCCTCAAGTCAGCATTGAGTTGACCAGGGAATCTGAGACATGTTGTCACTCCTGACATAGTTGCACTGACCAAGTGGTTCAAGTCTCCATAGGTGGGTGTGGTGAGTTTCAGAGTACGGAAGCATATGTCGTAGAGTGCTT                                             ]




>consensus_7624#0
ATTTTTTTCGCACCGAAAATTTTTTGGGCAACCCGGGAACGGTGTGAGAACGATACTGTT
GACGCCACGACTAGTGAGAGGTGCGAATCCAGGCATGAAGAAGTGGAGACGTGGGATGGC
ACCATGTTCACAGCGAGTTTCCTCAAGTCAGCATTGAGTTGACCAGGGAATCTGAGACAT
GTTGTCACTCCTGACATAGTTGCACTGACCAAGTGGTTCAAGTCTCCATAGGTGGGTGTG
GTGAGTTTCAGAGTACGGAAGCATATGTCGTAGAGTGCTTCGTTGTCAACGCAACACTCT
CTGTTCACCAACTCGTAGAGAACAC

consensusID : consensus_7624#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence

                              [TCCCACGTTCTCCACTTCTTCATGCCTGGATTCGCACCTCTCACTAGTCGTGGCAGTCAACAGTATCGTTCTCTCACCGTTCCCGAGTTGACTCAACAGATGTTCGATGCGAAGAACATGACGGCTGCATGCGATCCACGTCATGGACGATATCTCACAGTGGCTGCAATATTTCGAGGTCGTATGTCGATGAAGGAGGTTGATGAGCAGATGCTCAACGTACAGAACAAGAACTCGAGCTATTTCGTTGAATGGATACCGAACAATGTGAAGACGGCAGTGTGTGGACATTCCACCAAGAGGTC]

[+] EMBL CD135493             [TCCCACGTTCTCCACTTCTTCATGCCTGGATTCGCACCTCTCACTAGTCGTGGCAGTCAACAGTATCGTTCTCTCACCGTTCCCGAGTTGACTCAACAGATGTTCGATGCGAAGAACATGACGGCTGCATGCGATCCACGTCATGGACGATATCTCACAGTGGCTGCAATATTTCGAGGTCGTATGTCGATGAAGGAGGTTGATGAGCAGATGCTCAACGTACAGAACAAGAACTCGAGCTATTTCGTTGAATGGATACCGAACAATGTGAAGACGGCAGTGTGTGGACATTCCACCAAGAGGTC]




>consensus_7624#1
TCCCACGTTCTCCACTTCTTCATGCCTGGATTCGCACCTCTCACTAGTCGTGGCAGTCAA
CAGTATCGTTCTCTCACCGTTCCCGAGTTGACTCAACAGATGTTCGATGCGAAGAACATG
ACGGCTGCATGCGATCCACGTCATGGACGATATCTCACAGTGGCTGCAATATTTCGAGGT
CGTATGTCGATGAAGGAGGTTGATGAGCAGATGCTCAACGTACAGAACAAGAACTCGAGC
TATTTCGTTGAATGGATACCGAACAATGTGAAGACGGCAGTGTGTGGACATTCCACCAAG
AGGTC

consensusID : consensus_7624#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 126
fasta sequence

                              [TCTTGATTGGAAAAACCTTGGGGCTCTCACCGTTCCCGAGTTGACTCAACAGATGTTCGATGCGAAGAACATGATGGCTGCATGCGATCCACGTCATGGACGATATCTCACAGTGGCTGCAATATT]

[+] EMBL CD135651             [TCTTGATTGGAAAAACCTTGGGGCTCTCACCGTTCCCGAGTTGACTCAACAGATGTTCGATGCGAAGAACATGATGGCTGCATGCGATCCACGTCATGGACGATATCTCACAGTGGCTGCAATATT]




>consensus_7624#2
TCTTGATTGGAAAAACCTTGGGGCTCTCACCGTTCCCGAGTTGACTCAACAGATGTTCGA
TGCGAAGAACATGATGGCTGCATGCGATCCACGTCATGGACGATATCTCACAGTGGCTGC
AATATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7624#1      ------------------------TCCCACGTTCTCCACTTCTTCATGCCTGGATTCGCA 36
consensus_7624#2      ------------------------------------------------------------
consensus_7624#0      ATTTTTTTCGCACCGAAAATTTTTTGGGCAACCCGGGAACGGTGTGAGAACGATACTGTT 60
                                                                                  

consensus_7624#1      CCTCTCACTAGTCGTGGCAGTCAACAGTATCGTTCTCTCACCGTTCCCGAGTTGACTCAA 96
consensus_7624#2      -----------TCTTGATTGGAAAAACCTTGGGGCTCTCACCGTTCCCGAGTTGACTCAA 49
consensus_7624#0      GACGCCACGACTAGTGAGAGGTGCGAATCCAGGCATGAAGAAGTGGAGACGTGGGATGGC 120
                                 *  **   *     *     *   *      **      ** *  *   

consensus_7624#1      CAGATGTTCGATGCGAAGAACATGACGGCTGCATGCGAT---CCACGTCATGGACGATAT 153
consensus_7624#2      CAGATGTTCGATGCGAAGAACATGATGGCTGCATGCGAT---CCACGTCATGGACGATAT 106
consensus_7624#0      ACCATGTTCACAGCGAGTTTCCTCAAGTCAGCATTGAGTTGACCAGGGAATCTGAGACAT 180
                         ******   ****    * * * * * ****    *   *** *  **    ** **

consensus_7624#1      CTCACAGTGGCTGCAATATTTCGAGGTCGTATGTCGATGAAGGAGGTTGATGAGCAGATG 213
consensus_7624#2      CTCACAGTGGCTGCAATATT---------------------------------------- 126
consensus_7624#0      GTTGTCACTCCTGACATAGTTGCACTGACCAAGTGGTTCAAGTCTCCATAGGTGGGTGTG 240
                       *        ***  *** *                                        

consensus_7624#1      CTCAACGTACAGAACAAGAACTCGAGCTATTTCGTTGAATGGATACCGAACAATGTGAAG 273
consensus_7624#2      ------------------------------------------------------------
consensus_7624#0      GTGAGT-TTCAGAGTACGGAAGCA---TATGTCGTAGAGTGCTTCGTTGTCAACGCAACA 296
                                                                                  

consensus_7624#1      ACGGCAGTGTGTGGACATTCCACCAAGAGGTC 305
consensus_7624#2      --------------------------------
consensus_7624#0      CTCTCTGTTCACCAACTCGTAGAGAACAC--- 325