These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 913 fasta sequence [AGAAAAGCAGCTTAGATTCCTCTCCTGAATTCCATAGTCCTGGACATTATAATATGGAAAGCAGGATAGAATCTGTTACTCCTTTACTTCATCGATTTCCATACTCTATTGTATGGACTCCAATTCCCTTGTTAACATGGTTTTTTCCTGTAATTGGACATATGGGAATCGCTAATTCATATGGTATTATATATGATTTTGCAGCCCCTTATACTATTGGGGAAGACCAAATGGCTTTTGGATGGCCAACGATGTATTATCAGCCCCATGCTAGGCTGATAGGCAGTCGAGAGATCTGGGACAACGCTATCTCTGAAGCGAATGAAGCACTCTGGGGACGCGTGCATAACCTTTTTTGTGATAATTGCCATAGTCATGTGGCACATGCTTTCAACAAAATGCGATTTCAAGATAAAGAGAATTGGAATATGTTCAGTGTTGCTGTATTATTATTCTTTCATGGAAAGTATGTTAGTAAACGTCACTGTTTTACATCATGGTTTCCATTCATGATTGTCGTATGTGTAATTTTGGCAATCATATCAATTATTTTACATATCCATTGAATCTCACTTATAACCATCATATACAAACACTCAGATTATACTTGAGACTGATCTAATTCAACTTTTTTTTAGTTTAACCCTATTTATTGTAAAATATGTCATTTGTGTTTTCTAATGTAGTAGATCACCACACTAGCCTTTTTATTTGATTTTATGATTCCTCCACATATAATTAATATCCTTGTTACAGGTGTGTTTACTCGTTCTTCCCAGCTTTATGATGAAACAGTTATCATTGATGCCGAATATTTTAACAAAAAACAGCCAAATTTTCTTTCACATATATATCAATGTGACTAAAATTTTATTTAAAAGAACTTGTTTTCTGATATCGGTATAAAAATAAT] [+] EMBL CD079284 [AGAAAAGCAGCTTAGATTCCTCTCCTGAATTCCATAGTCCTGGACATTATAATATGGAAAGCAGGATAGAATCTGTTACTCCTTTACTTCATCGATTTCCATACTCTATTGTATGGACTCCAATTCCCTTGTTAACATGGTTTTTTCCTGTAATTGGACATATGGGAATCGCTAATTCATATGGTATTATATATGATTTTGCAGCCCCTTATACTATTGGGGAAGACCAAATGGCTTTTGGATGGCCAACGATGTATTATCAGCCCCATGCTAGGCTGATAGGCAGTCGAGAGATCTGGGACAACGCTATCTCTGAAGCGAATGAAGTTTACAAAGGACGCGTGCATAACCTTTTTTGTGATAATTGCCATAGTCATGTGGCACATGCTTTCAACAAAATGCGATTTCAAGATAAAGAGAATTGGAATATGTTCAGTGTTGCTGTATTATTATTCTTTCATGGAAAGTATGTTAGTAAACGTCACTGTTTTACATCATGGTTTCCATTCATGATTGTCGTATGTGTAATTTTGGCAATCATATCAATTATTTTACATATCCATTGAATCTCACTTATAACCATCATATACAAACACTCAGATTATACTTGAGACTGATCTAATTCAACTTTTTTTTAGTTTAACCCTATTTATTG NAAATAT ] [+] EMBL CD185666 [ CACTCTGGGGACGCGTGCATAACCTTTTTTGTGATAATTGCCATAGTCATGTGGCACATGCTTTCAACAAAATGCGATTTCAAGATAAAGAGAATTGGAATATGTTCAGTGTTGCTGTATTATTATTCTTTCATGGAAAGTATGTTAGTAAACGTCACTGTTTTACATCATGGTTTCCATTCATGATTGTCGTATGTGTAATTTTGGCAATCATATCAATTATTTTACATATCCATTGAATCTCACTTATAACCATCATATACAAACACTCAGATTATACTTGAGACTGATCTAATTCAACTTTTTTTTAGTTTAACCCTATTTATTGTAAAATATGTCATTTGTGTTTTCTAATGTAGTAGATCACCACACTAGCCTTTTTATTTGATTTTATGATTCCTCCACATATAATTAATATCCTTGTTACAGGTGTGTTT ] [+] EMBL CD185885 [ CACTCTGGGGACGCGTGCATAACCTTTTTTGTGATAATTGCCATAGTCATGTGGCACATGCTTTCAACAAAATGCGATTTCAAGATAAAGAGAATTGGAATATGTTCAGTGTTGCTGTATTATTATTCTTTCATGGAAAGTATGTTAGTAAACGTCACTGTTTTACATCATGGTTTCCATTCATGATTGTCGTATGTGTAATTTTGGCAATCATATCAATTATTTTACATATCCATTGAATCTCACTTATAACCATCATATACAAACACTCAGATTATACTTGAGACTGATCTAATTCAACTTTTTTTTAGTTTAACCCTATTTATTGTAAAATATGTCATTTGTGTTTTCTAATGTAGTAGATCACCACACTAGCCTTTTTATTTGATTTTATGATTCCTCCACATATAATTAATATCCTTGTTACAGGTGTGTTT ] [-] EMBL AI976599 [ TTATTCTTTCATGGAAAGTATGTTAGTAAACGTCACTGTTTTACATCATGGTTTCCATTCATGATTGTCGTATGTGTAATTTTGGCAATCATATCAATTATTTTACATATCCATTGAATCTCACTTATAACCATCATATACAAACACTCAGATTATACTTGAGACTGATCTAATTCAACTTTTTTTTAGTTTAACCCTATTTATTGTAAAATATGTCATTTGTGTTTTCTAATGTAGTAGATCACCACACTAGCCTTTTTATTTGATTTTATGATTCCTCCACATATAATTAATATCCTTGTTACAGGTGTGTTTACTCGTTCTTCCCAGCTTTATGATGAAACAGTTATCATTGATGCCGAATATTTTAACAAAAAACAGCCAAATTTTCTTTCACATATATATCAATGTGACTAAAATTTTATTTAAAAGAACTTGTTTTCTGATATCGGTATAAAAATAAT] consensusID : consensus_7626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [ATGGAAAGCAGGATAGAATCTGTTACTCCTTTACTTCATCGATTTCCATACTCTATTGTATGGACTCCAATTCCCTTGTTAACGTATGCTGTTATATGTGCTAACATCACTACTAATGAAGATGGTTTTTTCCTGTAATTGGACATATGGGAATCGCTAATTCATATGGTATTATATATGATTTTGCAGCCCCTTATACTATTGGGGAAGACCAAATGGCTTTTGGATGGCCAACGATGTATTATCAGCCCCATGCTAGGCTGATAGGCAG] [-] EMBL CD188777 [ATGGAAAGCAGGATAGAATCTGTTACTCCTTTACTTCATCGATTTCCATACTCTATTGTATGGACTCCAATTCCCTTGTTAACGTATGCTGTTATATGTGCTAACATCACTACTAATGAAGATGGTTTTTTCCTGTAATTGGACATATGGGAATCGCTAATTCATATGGTATTATATATGATTTTGCAGCCCCTTATACTATTGGGGAAGACCAAATGGCTTTTGGATGGCCAACGATGTATTATCAGCCCCATGCTAGGCTGATAGGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7626#0 AGAAAAGCAGCTTAGATTCCTCTCCTGAATTCCATAGTCCTGGACATTATAATATGGAAA 60 consensus_7626#1 -----------------------------------------------------ATGGAAA 7 ******* consensus_7626#0 GCAGGATAGAATCTGTTACTCCTTTACTTCATCGATTTCCATACTCTATTGTATGGACTC 120 consensus_7626#1 GCAGGATAGAATCTGTTACTCCTTTACTTCATCGATTTCCATACTCTATTGTATGGACTC 67 ************************************************************ consensus_7626#0 CAATTCCCTTGTTAAC--------------------------------------ATGGTT 142 consensus_7626#1 CAATTCCCTTGTTAACGTATGCTGTTATATGTGCTAACATCACTACTAATGAAGATGGTT 127 **************** ****** consensus_7626#0 TTTTCCTGTAATTGGACATATGGGAATCGCTAATTCATATGGTATTATATATGATTTTGC 202 consensus_7626#1 TTTTCCTGTAATTGGACATATGGGAATCGCTAATTCATATGGTATTATATATGATTTTGC 187 ************************************************************ consensus_7626#0 AGCCCCTTATACTATTGGGGAAGACCAAATGGCTTTTGGATGGCCAACGATGTATTATCA 262 consensus_7626#1 AGCCCCTTATACTATTGGGGAAGACCAAATGGCTTTTGGATGGCCAACGATGTATTATCA 247 ************************************************************ consensus_7626#0 GCCCCATGCTAGGCTGATAGGCAGTCGAGAGATCTGGGACAACGCTATCTCTGAAGCGAA 322 consensus_7626#1 GCCCCATGCTAGGCTGATAGGCAG------------------------------------ 271 ************************ consensus_7626#0 TGAAGCACTCTGGGGACGCGTGCATAACCTTTTTTGTGATAATTGCCATAGTCATGTGGC 382 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 ACATGCTTTCAACAAAATGCGATTTCAAGATAAAGAGAATTGGAATATGTTCAGTGTTGC 442 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 TGTATTATTATTCTTTCATGGAAAGTATGTTAGTAAACGTCACTGTTTTACATCATGGTT 502 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 TCCATTCATGATTGTCGTATGTGTAATTTTGGCAATCATATCAATTATTTTACATATCCA 562 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 TTGAATCTCACTTATAACCATCATATACAAACACTCAGATTATACTTGAGACTGATCTAA 622 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 TTCAACTTTTTTTTAGTTTAACCCTATTTATTGTAAAATATGTCATTTGTGTTTTCTAAT 682 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 GTAGTAGATCACCACACTAGCCTTTTTATTTGATTTTATGATTCCTCCACATATAATTAA 742 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 TATCCTTGTTACAGGTGTGTTTACTCGTTCTTCCCAGCTTTATGATGAAACAGTTATCAT 802 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 TGATGCCGAATATTTTAACAAAAAACAGCCAAATTTTCTTTCACATATATATCAATGTGA 862 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 CTAAAATTTTATTTAAAAGAACTTGTTTTCTGATATCGGTATAAAAATAAT 913 consensus_7626#1 --------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||