These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7631#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1060 fasta sequence [TAGAGTTGAGCGAGCTAGTTCATGTGCCGCTATCTTCTGCTAATCTTGCCGCCTACATCCCAAGTTCTTTTACCCTGTCACAACTTGTAAAATTAGGTGTTAATTTATCCAAGGTTGAAGCTGTTCCAGGTGTTGCAAATATGTTGGTGAAGCTTGATTTTCATAATGACATTGAACCTATACTATGGGGACTTTCAGACTTTGGATTTAAACCTAAACAAATCGCTCGGATTATTACGGCGTTCCCAAAAATACTTAAACTACCACTGATTTTAAGTCCATACTTTTTAGCTACCACTGTGCGAAATCAGTGCACGATTAACTTATTTTACAGACCGGAAGGTTTCGTCTACAGATGTTGTAACAATGATCTGCCGAGTTCCTAACATACTCGAGAAACCGCCCATGGAAATAGATAAAAATCTTGGTCAAATAAAGTCACTCATACAGTTAAAAAGTAATTTAACTGCTTATTATTTCCTCTTAATTGCTTTAGATTCAGAGGTTGTTGAAGTAATCACGACGGAACCCAAAATCATTACACACCCGCTACCAAAAATTAAGGATATTTTTGTTGTACTGTCAAAAATGATGGGATTTTCACAGTCAGCTATACATAAATTAGTTCTTACTAGCCCGAAATTATTGATAACAGAACGTGAGCATCTGTCAAACAACTTCAAAATTATGCATTGGCATCTTAATCTTCCAGTCGATCTCATACAAATATGGCCAGAAGCTTTATCTGCAGCACCGCATTTACTGCATCAACGATGCACATTTCTCGTGCATCGAAAGTTGTTTCAGCCAGATCCAACCAAACCCCTATATACACCCCTCAGTTCTATAGTTTTACAAGACGACGATGAATTTTGTCGAAAATACGGATTTACTACAGAAGAGGATTACGACAATTTTCTGCGAACTCTGTGAAATTAGTTTTCATCTTGTACATAAATGAAAGTGTAAATGATTCTTGATATTAAAGTCATCTTTAGTCTTTATGAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTAGTACTGC] [+] EMBL CD078003 [TAGAGTTGAGCGAGCTAGTTCATGTGCCGCTATCTTCTGCTAATCTTGCCGCCTACATCCCAAGTTCTTTTACCCTGTCACAACTTGTAAAATTAGGTGTTAATTTATCCAAGGTTGAAGCTGTTCCAGGTGTTGCAAATATGTTGGTGAAGCTTGATTTTCATAATGACATTGAACCTATACTATGGGGACTTTCAGACTTTGGATTTAAACCTAAACAAATCGCTCGGATTATTACGGCGTTCCCAAAAATACTTAAACTACCACTG ] [+] EMBL CD079054 [ ACAACTTGTAAAATTAGGTGTTAATTTATCCAAGGTTGAAGCTGTTCCAGGTGTTGCAAATATGTTGGTGAAGCTTGATTTTCATAATGACATTGAACCTATACTATGGGGACTTTCAGACTTTGGATTTAAACCTAAACAAATCGCTCGGATTATTACGGCGTTCCCAAAAATACTTAAAGTACGACTTATTTTAAGTCCATACTTTTTAGCTACCACTGTGCGAAATCAGTGCACGATTAACTTATTTTACAGACCGGAAGGTTTCGTCTACAGATGTTGTAACAATGATCTGCCGAGTTCCTAACATACTCGAGAAACCGCCCATGGAAATAGATAAAAATCTTGGTCAAATAAAGTCACTCATACAGTTAAAAAGTAATTTAACTGCTTATTATTTCCTCTTAATTGCTTTAGATTCAGAGGTTGTTGAAGTAATCACGACGGAACCCAAAATCATTACACACCCGCTACCAAAAATTAAGGATATTTTTGTTGTACTGTCAAAAATGATGGGATTTTCACAGTCAGCTATACATAAATTAGTTCTTACTAGCCCGAAATTATTGATAACAGAACGTGAGCATCTGTCANACAACTTC AAATTATGCATTGGCATCTTAATCTTCCAGTCGATCTCATACAAAT ] [-] EMBL CD073508 [ CTTAATTGCTTTAGATTCAGAGGTTGTTGAAGTAATCACGACGGAACCCAAAATCATTACACACCCGCTACCAAAAATTAAGGATATTTTTGTTGTACTGTCAAAAATGATGGGATTTTCACAGTCAGCTATACATAAATTAGTTCTTACTAGCCCGAAATTATTGATAACAGAACGTGAGCATCTGTCAAACAACTTCAAAATTATGCATTGGCATCTTAATCTTCCAGTCGATCTCATACAAATATGGCCAGAAGCTTTATCTGCAGCACCGCATTTACTGCATCAACGATGCACATTTCTCGTGCATCGAAAGTTGTTTCAGCCAGATCCAACCAAACCCCTATATACACCCCTCAGTTCTATAGTTTTACAAGACGACGATGAATTTTGTCGAAAATACGGATTTACTACAGAAGAGGATTACGACAATTTTCTGCGAACTCTGTGAAATTAGTTTTCATCTTGTACATAAATGAAAGTGTAAATGATT ] [-] EMBL AI976929 [ CAAAAATGATGGGATTTTCACAGTCAGCTATACATAAATTAGTTCTTACTAGACCGAAATTATTGATAACAGAACGTGAGCATCTGTCAAACAACTTCAAAATTATGCATTGGCATCTTAATCTTCCAGTCGATCTCATACAAATATGGCCAGAAGCTTTATCTGCAGCACCGCATTTACTGCATCAACGATGCACATTTCTCGTGCATCGAAAGTTGTTTCAGCCAGATCCAACCAAACCCCTATATACACCCCTCAGTTCTATAGTTTTACAAGACGACGATGAATTTTGTCGAAAATACGGATTTACTACAGAAGAGGATTTCGACAATTTTCTGCGAACTCTGTGAAATTAGTTTTCATCTTGTACATAAATGAAAGTGTAAATGATTCTTGATATTAAAGTCATCTTTAGTCTTTATGAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTAGTACTGC] consensusID : consensus_7631#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [AAATTGCTACAAAAACAGATAAAAGCCTACCTACACCCTAGCCCAACACCAAAAGAAAGCATAGAAATATTATCCCAGTGGTTTAAGGAGTTAGAGTTGAGCGAGCTAGTTCATGTGCTGCTATCTTCTGCTAATCTTGCCGCCTACATCCCAAGTTCTTTTACCCTGTCACAACTTGTAAAATTAGGTGTTAATTTATCCAAGGTTGAAGCTGTTCCAGGTGTTGCAAATATGTTGGTGAAGCTTGATTTTCATAATGACATTGAACCTATACTATGGGGACTTTCAGACTTTGGATTTAAACCTAAACAAATCGCTCGGATTATTACGGCGTTCCCAAAAATACTTAAACTACCACTGTGCGAAATCAGTGCACGATTAACTTATTT] [+] EMBL CD126575 [AAATTGCTACAAAAACAGATAAAAGCCTACCTACACCCTAGCCCAACACCAAAAGAAAGCATAGAAATATTATCCCAGTGGTTTAAGGAGTTAGAGTTGAGCGAGCTAGTTCATGTGCTGCTATCTTCTGCTAATCTTGCCGCCTACATCCCAAGTTCTTTTACCCTGTCACAACTTGTAAAATTAGGTGTTAATTTATCCAAGGTTGAAGCTGTTCCAGGTGTTGCAAATATGTTGGTGAAGCTTGATTTTCATAATGACATTGAACCTATACTATGGGGACTTTCAGACTTTGGATTTAAACCTAAACAAATCGCTCGGATTATTACGGCGTTCCCAAAAATACTTAAACTACCACTGTGCGAAATCAGTGCACGATTAACTTATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7631#0 ------------------------------------------------------------ consensus_7631#1 AAATTGCTACAAAAACAGATAAAAGCCTACCTACACCCTAGCCCAACACCAAAAGAAAGC 60 consensus_7631#0 -------------------------------TAGAGTTGAGCGAGCTAGTTCATGTGCCG 29 consensus_7631#1 ATAGAAATATTATCCCAGTGGTTTAAGGAGTTAGAGTTGAGCGAGCTAGTTCATGTGCTG 120 *************************** * consensus_7631#0 CTATCTTCTGCTAATCTTGCCGCCTACATCCCAAGTTCTTTTACCCTGTCACAACTTGTA 89 consensus_7631#1 CTATCTTCTGCTAATCTTGCCGCCTACATCCCAAGTTCTTTTACCCTGTCACAACTTGTA 180 ************************************************************ consensus_7631#0 AAATTAGGTGTTAATTTATCCAAGGTTGAAGCTGTTCCAGGTGTTGCAAATATGTTGGTG 149 consensus_7631#1 AAATTAGGTGTTAATTTATCCAAGGTTGAAGCTGTTCCAGGTGTTGCAAATATGTTGGTG 240 ************************************************************ consensus_7631#0 AAGCTTGATTTTCATAATGACATTGAACCTATACTATGGGGACTTTCAGACTTTGGATTT 209 consensus_7631#1 AAGCTTGATTTTCATAATGACATTGAACCTATACTATGGGGACTTTCAGACTTTGGATTT 300 ************************************************************ consensus_7631#0 AAACCTAAACAAATCGCTCGGATTATTACGGCGTTCCCAAAAATACTTAAACTACCACTG 269 consensus_7631#1 AAACCTAAACAAATCGCTCGGATTATTACGGCGTTCCCAAAAATACTTAAACTACCAC-- 358 ********************************************************** consensus_7631#0 ATTTTAAGTCCATACTTTTTAGCTACCACTGTGCGAAATCAGTGCACGATTAACTTATTT 329 consensus_7631#1 -----------------------------TGTGCGAAATCAGTGCACGATTAACTTATTT 389 ******************************* consensus_7631#0 TACAGACCGGAAGGTTTCGTCTACAGATGTTGTAACAATGATCTGCCGAGTTCCTAACAT 389 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 ACTCGAGAAACCGCCCATGGAAATAGATAAAAATCTTGGTCAAATAAAGTCACTCATACA 449 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 GTTAAAAAGTAATTTAACTGCTTATTATTTCCTCTTAATTGCTTTAGATTCAGAGGTTGT 509 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 TGAAGTAATCACGACGGAACCCAAAATCATTACACACCCGCTACCAAAAATTAAGGATAT 569 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 TTTTGTTGTACTGTCAAAAATGATGGGATTTTCACAGTCAGCTATACATAAATTAGTTCT 629 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 TACTAGCCCGAAATTATTGATAACAGAACGTGAGCATCTGTCAAACAACTTCAAAATTAT 689 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 GCATTGGCATCTTAATCTTCCAGTCGATCTCATACAAATATGGCCAGAAGCTTTATCTGC 749 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 AGCACCGCATTTACTGCATCAACGATGCACATTTCTCGTGCATCGAAAGTTGTTTCAGCC 809 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 AGATCCAACCAAACCCCTATATACACCCCTCAGTTCTATAGTTTTACAAGACGACGATGA 869 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 ATTTTGTCGAAAATACGGATTTACTACAGAAGAGGATTACGACAATTTTCTGCGAACTCT 929 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 GTGAAATTAGTTTTCATCTTGTACATAAATGAAAGTGTAAATGATTCTTGATATTAAAGT 989 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 CATCTTTAGTCTTTATGAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGC 1049 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 ATTAGTACTGC 1060 consensus_7631#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||