These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7635#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 457 fasta sequence [ACCGTCTCTATTTAAGCACTATCGCGATTATCATTATTACCTACTACTATTATTATTATTAGCAGTAGTAGTATCTAAGGTAATAAATATTGTATTGACCTTTTATTGGGTTCAATGAGTACAGTATGAGTACATTTTTGAAACCATGTCAACAAAACAATGTCCTCGGTAACTTTCTTTTCCTCCTCAAGGAATCATCCCCATTGTACACAGCTTTTGTTGCCTCATATATAGATATATTCAAG-AATTCTTTATAATGATGCCTTTACAATTGAATTCATTATTATTATGATTGTATGTGTCTNCCTTGTACTTCTACTTTATTATTGGTATAGTCAATTCATTGAATAAGTTAAATGATCAAATTTTTTTTCTCTTTTTTCATTCTGGTTTATAGTTTATTTATTGGTTAAACAATTCAAATG-AGCGACGTTTCATTTTAAAGT-CGCGCCATGTT] [+] EMBL AI111165 [ACCGTCTCTATTTAAGCACTATCGCGATTATCATTATTACCTACTACTATTATTATTATTAGCAGTAGTAGTATCTAAGGTAATAAATATTGTATTGACCTTTTATTGGGTTCAATGAGTACAGTATGAGTACATTTTTGAAACCATGTCAACAAAACAATGTCCTCGGTAACTTTCTTTTCCTCCTCAAGGAATCATCCCCATTGTACACAGCTTTTGTTGCCNCATNTTTAGATATATTCCAGAAATTCTTTATAATGATGCCTTTACAATTGAATTCATTATTATTATGATTGTNTGTGTCTNCCTTGTACTTCTACTTTATTATTGGTATAGTCAATTCATTGAATAAGTTAAATGATCAAATTTTTTTTCTCTTTTTTCATTCTGGTTTATAGTTTATTTATTGGTTAAACAA TCCAATG AGCGACGTTTCATTTTAAAGTCCGC CCATGT ] [+] EMBL AI110901 [ CCGTCTCTATTTAAGCACTATCGCGATTATCATTATTACCTACTACTATTATTATTATTAGCAGTAGTAGTATCTAAGGTAATAAATATTGTATTGACCTTTTATTGGGTTCAATGAGTACAGTATGAGTACATTTTTGAAACCATGTCAACAAAACAATGTCCTCGGTAACTTTCTTTTCCTCCTCAAGGAATCATCCCCATTGTACACAGCTTTTGTTGCCTCATATATAGATATATTCAAG AATTCTTTATAATGATGCCTTTACAATTGAATTCATTATTATTATGATTGTATGTGTCTTCCTTGTACTTCTACTTTATTATTGGTATAGTCAATTCATTGAATAAGTTAAATGATCAAATTTTTTTTCTCTTTTTTCATTCTGGTTTATAGTTTATTTATTGGTTAAACAATTCAAATGAAGCGACGTTTCATTTTAAAGT CGCGCCATGTT] [+] EMBL AI111024 [ CCGTCTCTATTTAAGCACTATCGCGATTATCATTATTACCTACTACTATTATTATTATTAGCAGTAGTAGTATCTAAGGTAATAAATATTGTATTGACCTTTTATTGGGTTCAATGAGTACAGTATGAGTACATTTTTGAAACCATGTCAACAAAACAATGTCCTCGGTAACTTTCTTTTCCTCCTCAAGGAATCATCCCCATTGTACACAGCTTTTGTTGCCTCATATATAGATATATTCAAG AATTCTTTATAATGATGCCTTTACAATTGAATTCATTATTATTATGATTGTATGTGTCTNCCTTGTACTTCTACTTTATTATTGGTATAGTCAATTCATTGAATAAGTTAAATGATCAAATTTTTTTNCTCTTTTTTCATTCTGGTTTATAGTTTATTTATTGGTTAAACAATTCAAATG AGCGACGTTTCATTTTAAAGT CGCGCCATG ] [+] EMBL AI111067 [ CCGTCTCTATTTAAGCACTATCGCGATTATCATTATTACCTACTACTATTATTATTATTAGCAGTAGTAGTATCTAAGGTAATAAATATTGTATTGACCTTTTATTGGGTTCAATGAGTACAGTATGAGTACATTTTTGAAACCATGTCAACAAAACAATGTCCTCGGTAACTTTCTTTTCCTCCTCAAGGAATCATCCCCATTGTACACAGCTTTTGTTGCCTCATATATAGATATATTCAAG AATTCTTTATAATGATGCCTTTACAATTGAATTCATTATTATTATGATTGTATGTGTCTTCCTTGTACTTCTACTTTATTATTGGTATAGTCAATTCATTGAATAAGTTAAATGATCAAA TTTTTTTCTCTTTTTTCATTCTGGTTTATAGTTTATTTATTGGT ] consensusID : consensus_7635#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [CCGTCTCTNTTTAAGCACTATCGCGATTATCATTATTACCNACTACTATTATTATNATTAGCAGTAGTANTATCTAAGGTAATAAATATTGTNTTGACCNTTTATTGGGTTCAACGAGTACAGTATGAGTNCATTTTTGAAACCATGTCAACAAAACAATNTCCTCGGTAACTTNCTTTCCCTCCTCAAGGAATCNTCCCCATNGTACNCAGCTTTTGTCGCCTCATATATANATATTTTCAANAATTCTTTATAATGATGCCTCTACAATCGAATTCA] [+] EMBL AI111087 [CCGTCTCTNTTTAAGCACTATCGCGATTATCATTATTACCNACTACTATTATTATNATTAGCAGTAGTANTATCTAAGGTAATAAATATTGTNTTGACCNTTTATTGGGTTCAACGAGTACAGTATGAGTNCATTTTTGAAACCATGTCAACAAAACAATNTCCTCGGTAACTTNCTTTCCCTCCTCAAGGAATCNTCCCCATNGTACNCAGCTTTTGTCGCCTCATATATANATATTTTCAANAATTCTTTATAATGATGCCTCTACAATCGAATTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7635#0 ACCGTCTCTATTTAAGCACTATCGCGATTATCATTATTACCTACTACTATTATTATTATT 60 consensus_7635#1 -CCGTCTCTNTTTAAGCACTATCGCGATTATCATTATTACCNACTACTATTATTATNATT 59 ******** ******************************* ************** *** consensus_7635#0 AGCAGTAGTAGTATCTAAGGTAATAAATATTGTATTGACCTTTTATTGGGTTCAATGAGT 120 consensus_7635#1 AGCAGTAGTANTATCTAAGGTAATAAATATTGTNTTGACCNTTTATTGGGTTCAACGAGT 119 ********** ********************** ****** ************** **** consensus_7635#0 ACAGTATGAGTACATTTTTGAAACCATGTCAACAAAACAATGTCCTCGGTAACTTTCTTT 180 consensus_7635#1 ACAGTATGAGTNCATTTTTGAAACCATGTCAACAAAACAATNTCCTCGGTAACTTNCTTT 179 *********** ***************************** ************* **** consensus_7635#0 TCCTCCTCAAGGAATCATCCCCATTGTACACAGCTTTTGTTGCCTCATATATAGATATAT 240 consensus_7635#1 CCCTCCTCAAGGAATCNTCCCCATNGTACNCAGCTTTTGTCGCCTCATATATANATATTT 239 *************** ******* **** ********** ************ **** * consensus_7635#0 TCAAGAATTCTTTATAATGATGCCTTTACAATTGAATTCATTATTATTATGATTGTATGT 300 consensus_7635#1 TCAANAATTCTTTATAATGATGCCTCTACAATCGAATTCA-------------------- 279 **** ******************** ****** ******* consensus_7635#0 GTCTNCCTTGTACTTCTACTTTATTATTGGTATAGTCAATTCATTGAATAAGTTAAATGA 360 consensus_7635#1 ------------------------------------------------------------ consensus_7635#0 TCAAATTTTTTTTCTCTTTTTTCATTCTGGTTTATAGTTTATTTATTGGTTAAACAATTC 420 consensus_7635#1 ------------------------------------------------------------ consensus_7635#0 AAATGAGCGACGTTTCATTTTAAAGTCGCGCCATGTT 457 consensus_7635#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||