These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7638#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1143 fasta sequence [AAATTTTGTCCTATTTGTATGGTTTTTTTAACAGTCACCAAATTTACGATTCCATAAAGAGATCAATAAATAATTTTATAAAAAAAATGCAATATTTAAAAGGGTAAATAAAATCTGCAGATAAAACAATCTACAGACCTATCACCAGTTGACAACAATAATTAGATTAAATTCTCCAGTGAGTCACTATAAAAGTAATTAAAATCTAACCGTGACAATAACTTATTTAAATCTGTTGTGCCCGAATAGTGAGGACCATTGGTAGTAGTAATACCAGGTAACGATAGCGATTCGAAGTCTCGATGATGATTAACAACAGTATAGCCAGAATTGAAACCAACACTACTTTTAGCACCGGTTGAACAAGAAATATTCAATAAATCATACAATAATTTTGCTTGAGTATAGAATTTATTCACCATCTCTTGCACTTTATCAGACAATTGATGGTTGTGGTCATCATCCATATTCATTAAATGATCATAGTAGTATTGTTGATTTGATAAATCCACAAATTGACAGCAATAGTTTAACAACTGCAATATACATAATTTTATATCTGGATGAACAATAATGCTTGCGCTTGTAAACCAGCCAGGTAAGCTTCTTGTGCGATTTGAATTAATCGAATTTCTTGATCAATATGTAAACGACGAATTAAGTGTGAAAATTGTGCTTCAATTACATCAACCTGTAAATAATACTGTAAACTGTCAATAATAAATGCCATATGACTACGAACTAGGAGGCGTTGATCTATACAAGACTGCAATTGAATAAAAACATTGATTGGTGCTTTATTATAATTTACATGGAGCTGATTACGAGCAGAGGTACGACGCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAATTGTGTTCGACGGATAGCGAATAGAAATCTAAATAACCTGTCGTAAGCACGACAAATATTAGGAGAGAATAAACGTTCGAACACCGGTGGAGCAATAATGCATAAATGTAAACGATCCAAAACAGTAATATTTTCTGACAATTTATTTGATTGAGCTGCTGCCAACTTTATTGAGAATCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGNGGGAGG] [+] EMBL CD077333 [AAATTTTGTCCTATTTGTATGGTTTTTTTAACAGTCACCAAATTTACGATTCCATAAAGAGATCAATAAATAATTTTATAAAAAAAATGCAATATTTAAAAGGGTAAATAAAATCTGCAGATAAAACAATCTACAGACCTATCACCAGTTGACAACAATAATTAGATTAAATTCTCCAGTGAGTCACTATAAAAGTAATTAAAATCTAACCGTGACAATAACTTATTTAAATCTGTTGTGCCCGAATAGTGAGGACCATTGGTAGTAGTAATACCAGGTAACGATAGCGATTCGAAGTCTCGATGATGATTAACAACAGTATAGCCAGAATTGAAACCAACACTACTTTTAGCACCGGTTGAACAAGAAATATTCAATAAATCATACAATAATTTTGCTTGAGTATAGAATTTATTCACCATCTCTTGCACTTTATCAGACAATTGATGGTTGTGGTCATCATCCATATTCATTAAATGATCATAGTAGTATTGTTGATTTGATAAATCCACAAATTGACAGCAATAGTTTAACAACTGCAATATACATAATTTTATATCTGGATGAACAATAATGCTTGCGCTTGTAAACCAGCCAGGTAAGCTTCTTGTGCGATTTGAATTAATCGAATTTCTTGATCAATATGTAAACGACGAATTAAGTGTGAAAATTGTGCTTCAATTACATCAACCTGTA ] [+] EMBL CD159331 [ ACCAGCCAGGTAAGCTTCTTGTGCGATTTGAATTAATCGAATTTCTTGGTCAATATGTAAACGACGAATTAAGTGTGAAAATTGTGCTTCAATTACATCAACCTGTAAATAATACTGTAAACTGTCAATAATAAATGCCATATGACTACGAACTAGGAGGCGTTGATCTATACAAGACTGCAATTGAATAAAAACATTGATTGGTGCTTTATTATAATTTACATGGAGCTGATTACGAGCAGAGGTACGACGCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAATTGTGTTCGACGGATAGCGAATAGAAATCTAAATAACCTGTCGTAAGCACGACAAATATTAGGAGAGAATAAACGTTCGAACACCGGTGGAGCAATAATGCATAAATGTAAACGATCCAAAACAGTAATATTTTCTGACAATTTATTTGATTGAGCTGCTGCCAACTTTATTGAGAATCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGNGGGAGG] consensusID : consensus_7638#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [GAACACAAAAATCCTCGTGACTACTGAGAATTATAAGTCAATCATTACATATATACTCATTTGGCAAAAATAAGAGCAGTTTGAAATAGAAGTAACATAACACTACAAAATTGTTGATATACACTTGAGAAATTCAATATTACACGGTGACATACTTAAAATTGGAATCTAGTTCTTCATCATCCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGGGGGAGGTTTGTCTAAAATGCTATGCTGAATTTTACAAGTGGTTCCACAACGTGAATTATTAATGTTGCTGAGATTATTTGAAATATTTAAATGATCAAGGAATGCCAAGAATAATTCGCCTCTTCCTAAAAGTAGGACATCTTTAACTAAGCAAATATATTGAATTAATTTGTGTTCTTTCAAT] [+] EMBL CD170220 [GAACACAAAAATCCTCGTGACTACTGAGAATTATAAGTCAATCATTACATATATACTCATTTGGCAAAAATAAGAGCAGTTTGAAATAGAAGTAACATAACACTACAAAATTGTTGATATACACTTGAGAAATTCAATATTACACGGTGACATACTTAAAATTGGAATCTAGTTCTTCATCATCCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGGGGGAGGTTTGTCTAAAATGCTATGCTGAATTTTACAAGTGGTTCCACAACGTGAATTATTAATGTTGCTGAGATTATTTGAAATATTTAAATGATCAAGGAATGCCAAGAATAATTCGCCTCTTCCTAAAAGTAGGACATCTTTAACTAAGCAAATATATTGAATTAATTTGTGTTCTTTCAAT] consensusID : consensus_7638#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [CATATACCTTGAACCCCAACANTATGGCTCAATCCAATTCAAGGAACATTATAGATTGGATGCCCTACCTTGATTTGGTCACTCCTAGCTTTTATTTCAACCTATTCCTGTAAATAANACTGTAAACTGTCAATAATAAATGCCATATGACTACGAACTAGGAGGCGTTGATNTATACAAGACTGCAATTGAATAAAAACATTGATTGGTGNTTTATTATAATTTACATGGAGCTGATTACGAGCAGAGGTACGACGCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAATTGTGTTNGACGGATAGCGAATAGAAATCTAAATAACCTGTNGTAAGCACGACAAATATTAGGAGAGAATAAACGTTCGAACACC] [-] EMBL AI111004 [CATATACCTTGAACCCCAACANTATGGCTCAATCCAATTCAAGGAACATTATAGATTGGATGCCCTACCTTGATTTGGTCACTCCTAGCTTTTATTTCAACCTATTCCTGTAAATAANACTGTAAACTGTCAATAATAAATGCCATATGACTACGAACTAGGAGGCGTTGATNTATACAAGACTGCAATTGAATAAAAACATTGATTGGTGNTTTATTATAATTTACATGGAGCTGATTACGAGCAGAGGTACGACGCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAATTGTGTTNGACGGATAGCGAATAGAAATCTAAATAACCTGTNGTAAGCACGACAAATATTAGGAGAGAATAAACGTTCGAACACC] consensusID : consensus_7638#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [ATAAACGTTCGAACACCGGTGGAGCAATAATGCATAAATGTAAACGATCCAAAACAGTAATATTTTCTGACAATTTATNTGAGTGAGCTGCTGCCAACTTTATTGAGAATTTAAAATTGGAATCTAGTTCTTCATCATCCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGGGGGAGGTTTGTCTAAAATGCTATGCTGAATTTTACAAGTGGTTCCACAACGTGAATTATTAATGTTGCTG] [-] EMBL CD070367 [ATAAACGTTCGAACACCGGTGGAGCAATAATGCATAAATGTAAACGATCCAAAACAGTAATATTTTCTGACAATTTATNTGAGTGAGCTGCTGCCAACTTTATTGAGAATTTAAAATTGGAATCTAGTTCTTCATCATCCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGGGGGAGGTTTGTCTAAAATGCTATGCTGAATTTTACAAGTGGTTCCACAACGTGAATTATTAATGTTGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7638#1 ------------------------------------------------------------ consensus_7638#3 ------------------------------------------------------------ consensus_7638#0 AAATTTTGTCCTATTTGTATGGTTTTTTTAACAGTCACCAAATTTACGATTCCATAAAGA 60 consensus_7638#2 ------------------------------------------------------------ consensus_7638#1 ------------------------------------------------------------ consensus_7638#3 ------------------------------------------------------------ consensus_7638#0 GATCAATAAATAATTTTATAAAAAAAATGCAATATTTAAAAGGGTAAATAAAATCTGCAG 120 consensus_7638#2 ------------------------------------------------------------ consensus_7638#1 ------------------------------------------------------------ consensus_7638#3 ------------------------------------------------------------ consensus_7638#0 ATAAAACAATCTACAGACCTATCACCAGTTGACAACAATAATTAGATTAAATTCTCCAGT 180 consensus_7638#2 ------------------------------------------------------------ consensus_7638#1 ------------------------------------------------------------ consensus_7638#3 ------------------------------------------------------------ consensus_7638#0 GAGTCACTATAAAAGTAATTAAAATCTAACCGTGACAATAACTTATTTAAATCTGTTGTG 240 consensus_7638#2 ------------------------------------------------------------ consensus_7638#1 ------------------------------------------------------------ consensus_7638#3 ------------------------------------------------------------ consensus_7638#0 CCCGAATAGTGAGGACCATTGGTAGTAGTAATACCAGGTAACGATAGCGATTCGAAGTCT 300 consensus_7638#2 ------------------------------------------------------------ consensus_7638#1 ------------------------------------------------------------ consensus_7638#3 ------------------------------------------------------------ consensus_7638#0 CGATGATGATTAACAACAGTATAGCCAGAATTGAAACCAACACTACTTTTAGCACCGGTT 360 consensus_7638#2 ------------------------------------------------------------ consensus_7638#1 ------------------------------------------------------------ consensus_7638#3 ------------------------------------------------------------ consensus_7638#0 GAACAAGAAATATTCAATAAATCATACAATAATTTTGCTTGAGTATAGAATTTATTCACC 420 consensus_7638#2 ------------------------------------------------------------ consensus_7638#1 ------------------------------------------------------------ consensus_7638#3 ------------------------------------------------------------ consensus_7638#0 ATCTCTTGCACTTTATCAGACAATTGATGGTTGTGGTCATCATCCATATTCATTAAATGA 480 consensus_7638#2 ------------------------------------------------------------ consensus_7638#1 -------------------------------------------------------GAACA 5 consensus_7638#3 ------------------------------------------------------------ consensus_7638#0 TCATAGTAGTATTGTTGATTTGATAAATCCACAAATTGACAGCAATAGTTTAACAACTGC 540 consensus_7638#2 ------------------------------------------------------------ consensus_7638#1 CAAAAATCCTCGTGACTACTGAGAATTATAAGTCAATCATTACATATATACTCATTTGGC 65 consensus_7638#3 ---------------------------ATAAACGTTCGAACACCGGTGGAGCAATAATGC 33 consensus_7638#0 AATATACATAATTTTATATCTGGATGAACAATAATGCTTGCGCTTGTAAACCAGCCAGGT 600 consensus_7638#2 ------------------------------------CATATACCTTGAACCCCAACAN-- 22 * consensus_7638#1 AAAAATAAGA-GCAGTTTGAAATA-GAAGTAACATAACACTACAAAATTGTTGATATACA 123 consensus_7638#3 ATAAATGTAA-ACGATCCAAAACA-GTAATATTTT----CTGACAATTTATNTGAGTGAG 87 consensus_7638#0 AAGCTTCTTGTGCGATTTGAATTAATCGAATTTCT----TGATCAATATGTAAACGACGA 656 consensus_7638#2 -----TATGGCTCAATCCAATTCAAGGAACATTAT----AGATTGGATGCCCTACCTTGA 73 * * * * * * consensus_7638#1 CTTGAGAAATTCAATATTACACGGTGACATACTTAAAATTGGAATCTAGTTCTTCATCAT 183 consensus_7638#3 CTGCTG----CCAACTTTAT----TGAGA-ATTTAAAATTGGAATCTAGTTCTTCATCAT 138 consensus_7638#0 ATTAAGTGTGA--AAATTGTGCTTCAATTACATCAACCTGTAAATAATACTGTAAACTGT 714 consensus_7638#2 TTTGGTCACTCCTAGCTTTTATTTCAACC-TATT--CCTGTAAATAANACTGTAAACTGT 130 * * ** * * * *** * * * * consensus_7638#1 CCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCT 243 consensus_7638#3 CCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCT 198 consensus_7638#0 CAATA----ATAAATGCCATATGACTACGAACTAGGAGGCGTTGATCTATACAAGA-CTG 769 consensus_7638#2 CAATA----ATAAATGCCATATGACTACGAACTAGGAGGCGTTGATNTATACAAGA-CTG 185 * *** * ** * * * * *** * *** ***** * consensus_7638#1 GAACTGCACTTT--CATTTGTTGGGGGAGGTTTGTCTAAAATGCTATGCTGAATTTTACA 301 consensus_7638#3 GAACTGCACTTT--CATTTGTTGGGGGAGGTTTGTCTAAAATGCTATGCTGAATTTTACA 256 consensus_7638#0 CAATTGAATAAAAACATTGATTGGTGCTTTATTATAATTTACATGGAGCTGATTACGAGC 829 consensus_7638#2 CAATTGAATAAAAACATTGATTGGTGNTTTATTATAATTTACATGGAGCTGATTACGAGC 245 ** ** * **** **** * ** * * ***** * * consensus_7638#1 AGTGGTTCCACAACGTGAATTA--TTAATGTTGCTGAGATTATTTGAAATATTTAAATGA 359 consensus_7638#3 AGTGGTTCCACAACGTGAATTA--TTAATGTTGCTG------------------------ 290 consensus_7638#0 AGAGGTACGACGCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAATTGTGT 889 consensus_7638#2 AGAGGTACGACGCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAATTGTGT 305 ** *** * ** * ** * ** ** * consensus_7638#1 TCAAGGAATGCCAAGAATAATTCGCCTCTTCCTAAAAGTAGGACATCTTTAACTAAGCAA 419 consensus_7638#3 ------------------------------------------------------------ consensus_7638#0 TCGACGGATAGCGAATAGAAATCTAAATAACCTGTCGTAAGCACGACAAATATTAGGAGA 949 consensus_7638#2 TNGACGGATAGCGAATAGAAATCTAAATAACCTGTNGTAAGCACGACAAATATTAGGAGA 365 consensus_7638#1 ATATATTGAATTAATTTGTGTTCTTTCAAT------------------------------ 449 consensus_7638#3 ------------------------------------------------------------ consensus_7638#0 GAATAAACGTTCGAACACCGGTGGAGCAATAATGCATAAATGTAAACGATCCAAAACAGT 1009 consensus_7638#2 GAATAAACGTTCGAACACC----------------------------------------- 384 consensus_7638#1 ------------------------------------------------------------ consensus_7638#3 ------------------------------------------------------------ consensus_7638#0 AATATTTTCTGACAATTTATTTGATTGAGCTGCTGCCAACTTTATTGAGAATCTAAAGAA 1069 consensus_7638#2 ------------------------------------------------------------ consensus_7638#1 ------------------------------------------------------------ consensus_7638#3 ------------------------------------------------------------ consensus_7638#0 CGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCA 1129 consensus_7638#2 ------------------------------------------------------------ consensus_7638#1 -------------- consensus_7638#3 -------------- consensus_7638#0 TTTGTTGNGGGAGG 1143 consensus_7638#2 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||