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Schistosoma mansoni
cluster # 7638 cluster # 7638       Sequences # 5       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7638#0 length = 1143 sequences # 2  
consensus_7638#1 length = 449 sequences # 1  
consensus_7638#2 length = 384 sequences # 1  
consensus_7638#3 length = 290 sequences # 1  

consensusID : consensus_7638#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1143
fasta sequence
                              [AAATTTTGTCCTATTTGTATGGTTTTTTTAACAGTCACCAAATTTACGATTCCATAAAGAGATCAATAAATAATTTTATAAAAAAAATGCAATATTTAAAAGGGTAAATAAAATCTGCAGATAAAACAATCTACAGACCTATCACCAGTTGACAACAATAATTAGATTAAATTCTCCAGTGAGTCACTATAAAAGTAATTAAAATCTAACCGTGACAATAACTTATTTAAATCTGTTGTGCCCGAATAGTGAGGACCATTGGTAGTAGTAATACCAGGTAACGATAGCGATTCGAAGTCTCGATGATGATTAACAACAGTATAGCCAGAATTGAAACCAACACTACTTTTAGCACCGGTTGAACAAGAAATATTCAATAAATCATACAATAATTTTGCTTGAGTATAGAATTTATTCACCATCTCTTGCACTTTATCAGACAATTGATGGTTGTGGTCATCATCCATATTCATTAAATGATCATAGTAGTATTGTTGATTTGATAAATCCACAAATTGACAGCAATAGTTTAACAACTGCAATATACATAATTTTATATCTGGATGAACAATAATGCTTGCGCTTGTAAACCAGCCAGGTAAGCTTCTTGTGCGATTTGAATTAATCGAATTTCTTGATCAATATGTAAACGACGAATTAAGTGTGAAAATTGTGCTTCAATTACATCAACCTGTAAATAATACTGTAAACTGTCAATAATAAATGCCATATGACTACGAACTAGGAGGCGTTGATCTATACAAGACTGCAATTGAATAAAAACATTGATTGGTGCTTTATTATAATTTACATGGAGCTGATTACGAGCAGAGGTACGACGCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAATTGTGTTCGACGGATAGCGAATAGAAATCTAAATAACCTGTCGTAAGCACGACAAATATTAGGAGAGAATAAACGTTCGAACACCGGTGGAGCAATAATGCATAAATGTAAACGATCCAAAACAGTAATATTTTCTGACAATTTATTTGATTGAGCTGCTGCCAACTTTATTGAGAATCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGNGGGAGG]

[+] EMBL CD077333             [AAATTTTGTCCTATTTGTATGGTTTTTTTAACAGTCACCAAATTTACGATTCCATAAAGAGATCAATAAATAATTTTATAAAAAAAATGCAATATTTAAAAGGGTAAATAAAATCTGCAGATAAAACAATCTACAGACCTATCACCAGTTGACAACAATAATTAGATTAAATTCTCCAGTGAGTCACTATAAAAGTAATTAAAATCTAACCGTGACAATAACTTATTTAAATCTGTTGTGCCCGAATAGTGAGGACCATTGGTAGTAGTAATACCAGGTAACGATAGCGATTCGAAGTCTCGATGATGATTAACAACAGTATAGCCAGAATTGAAACCAACACTACTTTTAGCACCGGTTGAACAAGAAATATTCAATAAATCATACAATAATTTTGCTTGAGTATAGAATTTATTCACCATCTCTTGCACTTTATCAGACAATTGATGGTTGTGGTCATCATCCATATTCATTAAATGATCATAGTAGTATTGTTGATTTGATAAATCCACAAATTGACAGCAATAGTTTAACAACTGCAATATACATAATTTTATATCTGGATGAACAATAATGCTTGCGCTTGTAAACCAGCCAGGTAAGCTTCTTGTGCGATTTGAATTAATCGAATTTCTTGATCAATATGTAAACGACGAATTAAGTGTGAAAATTGTGCTTCAATTACATCAACCTGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD159331             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ACCAGCCAGGTAAGCTTCTTGTGCGATTTGAATTAATCGAATTTCTTGGTCAATATGTAAACGACGAATTAAGTGTGAAAATTGTGCTTCAATTACATCAACCTGTAAATAATACTGTAAACTGTCAATAATAAATGCCATATGACTACGAACTAGGAGGCGTTGATCTATACAAGACTGCAATTGAATAAAAACATTGATTGGTGCTTTATTATAATTTACATGGAGCTGATTACGAGCAGAGGTACGACGCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAATTGTGTTCGACGGATAGCGAATAGAAATCTAAATAACCTGTCGTAAGCACGACAAATATTAGGAGAGAATAAACGTTCGAACACCGGTGGAGCAATAATGCATAAATGTAAACGATCCAAAACAGTAATATTTTCTGACAATTTATTTGATTGAGCTGCTGCCAACTTTATTGAGAATCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGNGGGAGG]


>consensus_7638#0 AAATTTTGTCCTATTTGTATGGTTTTTTTAACAGTCACCAAATTTACGATTCCATAAAGA GATCAATAAATAATTTTATAAAAAAAATGCAATATTTAAAAGGGTAAATAAAATCTGCAG ATAAAACAATCTACAGACCTATCACCAGTTGACAACAATAATTAGATTAAATTCTCCAGT GAGTCACTATAAAAGTAATTAAAATCTAACCGTGACAATAACTTATTTAAATCTGTTGTG CCCGAATAGTGAGGACCATTGGTAGTAGTAATACCAGGTAACGATAGCGATTCGAAGTCT CGATGATGATTAACAACAGTATAGCCAGAATTGAAACCAACACTACTTTTAGCACCGGTT GAACAAGAAATATTCAATAAATCATACAATAATTTTGCTTGAGTATAGAATTTATTCACC ATCTCTTGCACTTTATCAGACAATTGATGGTTGTGGTCATCATCCATATTCATTAAATGA TCATAGTAGTATTGTTGATTTGATAAATCCACAAATTGACAGCAATAGTTTAACAACTGC AATATACATAATTTTATATCTGGATGAACAATAATGCTTGCGCTTGTAAACCAGCCAGGT AAGCTTCTTGTGCGATTTGAATTAATCGAATTTCTTGATCAATATGTAAACGACGAATTA AGTGTGAAAATTGTGCTTCAATTACATCAACCTGTAAATAATACTGTAAACTGTCAATAA TAAATGCCATATGACTACGAACTAGGAGGCGTTGATCTATACAAGACTGCAATTGAATAA AAACATTGATTGGTGCTTTATTATAATTTACATGGAGCTGATTACGAGCAGAGGTACGAC GCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAATTGTGTTCGACGGATAG CGAATAGAAATCTAAATAACCTGTCGTAAGCACGACAAATATTAGGAGAGAATAAACGTT CGAACACCGGTGGAGCAATAATGCATAAATGTAAACGATCCAAAACAGTAATATTTTCTG ACAATTTATTTGATTGAGCTGCTGCCAACTTTATTGAGAATCTAAAGAACGAGCTGCTGC CAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGNGGG AGG



consensusID : consensus_7638#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence
                              [GAACACAAAAATCCTCGTGACTACTGAGAATTATAAGTCAATCATTACATATATACTCATTTGGCAAAAATAAGAGCAGTTTGAAATAGAAGTAACATAACACTACAAAATTGTTGATATACACTTGAGAAATTCAATATTACACGGTGACATACTTAAAATTGGAATCTAGTTCTTCATCATCCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGGGGGAGGTTTGTCTAAAATGCTATGCTGAATTTTACAAGTGGTTCCACAACGTGAATTATTAATGTTGCTGAGATTATTTGAAATATTTAAATGATCAAGGAATGCCAAGAATAATTCGCCTCTTCCTAAAAGTAGGACATCTTTAACTAAGCAAATATATTGAATTAATTTGTGTTCTTTCAAT]

[+] EMBL CD170220             [GAACACAAAAATCCTCGTGACTACTGAGAATTATAAGTCAATCATTACATATATACTCATTTGGCAAAAATAAGAGCAGTTTGAAATAGAAGTAACATAACACTACAAAATTGTTGATATACACTTGAGAAATTCAATATTACACGGTGACATACTTAAAATTGGAATCTAGTTCTTCATCATCCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGGGGGAGGTTTGTCTAAAATGCTATGCTGAATTTTACAAGTGGTTCCACAACGTGAATTATTAATGTTGCTGAGATTATTTGAAATATTTAAATGATCAAGGAATGCCAAGAATAATTCGCCTCTTCCTAAAAGTAGGACATCTTTAACTAAGCAAATATATTGAATTAATTTGTGTTCTTTCAAT]


>consensus_7638#1 GAACACAAAAATCCTCGTGACTACTGAGAATTATAAGTCAATCATTACATATATACTCAT TTGGCAAAAATAAGAGCAGTTTGAAATAGAAGTAACATAACACTACAAAATTGTTGATAT ACACTTGAGAAATTCAATATTACACGGTGACATACTTAAAATTGGAATCTAGTTCTTCAT CATCCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAG CCTGAACTGCACTTTCATTTGTTGGGGGAGGTTTGTCTAAAATGCTATGCTGAATTTTAC AAGTGGTTCCACAACGTGAATTATTAATGTTGCTGAGATTATTTGAAATATTTAAATGAT CAAGGAATGCCAAGAATAATTCGCCTCTTCCTAAAAGTAGGACATCTTTAACTAAGCAAA TATATTGAATTAATTTGTGTTCTTTCAAT



consensusID : consensus_7638#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence
                              [CATATACCTTGAACCCCAACANTATGGCTCAATCCAATTCAAGGAACATTATAGATTGGATGCCCTACCTTGATTTGGTCACTCCTAGCTTTTATTTCAACCTATTCCTGTAAATAANACTGTAAACTGTCAATAATAAATGCCATATGACTACGAACTAGGAGGCGTTGATNTATACAAGACTGCAATTGAATAAAAACATTGATTGGTGNTTTATTATAATTTACATGGAGCTGATTACGAGCAGAGGTACGACGCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAATTGTGTTNGACGGATAGCGAATAGAAATCTAAATAACCTGTNGTAAGCACGACAAATATTAGGAGAGAATAAACGTTCGAACACC]

[-] EMBL AI111004             [CATATACCTTGAACCCCAACANTATGGCTCAATCCAATTCAAGGAACATTATAGATTGGATGCCCTACCTTGATTTGGTCACTCCTAGCTTTTATTTCAACCTATTCCTGTAAATAANACTGTAAACTGTCAATAATAAATGCCATATGACTACGAACTAGGAGGCGTTGATNTATACAAGACTGCAATTGAATAAAAACATTGATTGGTGNTTTATTATAATTTACATGGAGCTGATTACGAGCAGAGGTACGACGCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAATTGTGTTNGACGGATAGCGAATAGAAATCTAAATAACCTGTNGTAAGCACGACAAATATTAGGAGAGAATAAACGTTCGAACACC]


>consensus_7638#2 CATATACCTTGAACCCCAACANTATGGCTCAATCCAATTCAAGGAACATTATAGATTGGA TGCCCTACCTTGATTTGGTCACTCCTAGCTTTTATTTCAACCTATTCCTGTAAATAANAC TGTAAACTGTCAATAATAAATGCCATATGACTACGAACTAGGAGGCGTTGATNTATACAA GACTGCAATTGAATAAAAACATTGATTGGTGNTTTATTATAATTTACATGGAGCTGATTA CGAGCAGAGGTACGACGCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAAT TGTGTTNGACGGATAGCGAATAGAAATCTAAATAACCTGTNGTAAGCACGACAAATATTA GGAGAGAATAAACGTTCGAACACC



consensusID : consensus_7638#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence
                              [ATAAACGTTCGAACACCGGTGGAGCAATAATGCATAAATGTAAACGATCCAAAACAGTAATATTTTCTGACAATTTATNTGAGTGAGCTGCTGCCAACTTTATTGAGAATTTAAAATTGGAATCTAGTTCTTCATCATCCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGGGGGAGGTTTGTCTAAAATGCTATGCTGAATTTTACAAGTGGTTCCACAACGTGAATTATTAATGTTGCTG]

[-] EMBL CD070367             [ATAAACGTTCGAACACCGGTGGAGCAATAATGCATAAATGTAAACGATCCAAAACAGTAATATTTTCTGACAATTTATNTGAGTGAGCTGCTGCCAACTTTATTGAGAATTTAAAATTGGAATCTAGTTCTTCATCATCCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGGGGGAGGTTTGTCTAAAATGCTATGCTGAATTTTACAAGTGGTTCCACAACGTGAATTATTAATGTTGCTG]


>consensus_7638#3 ATAAACGTTCGAACACCGGTGGAGCAATAATGCATAAATGTAAACGATCCAAAACAGTAA TATTTTCTGACAATTTATNTGAGTGAGCTGCTGCCAACTTTATTGAGAATTTAAAATTGG AATCTAGTTCTTCATCATCCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAA CATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGGGGGAGGTTTGTCTAAAATGC TATGCTGAATTTTACAAGTGGTTCCACAACGTGAATTATTAATGTTGCTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7638#1      ------------------------------------------------------------
consensus_7638#3      ------------------------------------------------------------
consensus_7638#0      AAATTTTGTCCTATTTGTATGGTTTTTTTAACAGTCACCAAATTTACGATTCCATAAAGA 60
consensus_7638#2      ------------------------------------------------------------
                                                                                  

consensus_7638#1      ------------------------------------------------------------
consensus_7638#3      ------------------------------------------------------------
consensus_7638#0      GATCAATAAATAATTTTATAAAAAAAATGCAATATTTAAAAGGGTAAATAAAATCTGCAG 120
consensus_7638#2      ------------------------------------------------------------
                                                                                  

consensus_7638#1      ------------------------------------------------------------
consensus_7638#3      ------------------------------------------------------------
consensus_7638#0      ATAAAACAATCTACAGACCTATCACCAGTTGACAACAATAATTAGATTAAATTCTCCAGT 180
consensus_7638#2      ------------------------------------------------------------
                                                                                  

consensus_7638#1      ------------------------------------------------------------
consensus_7638#3      ------------------------------------------------------------
consensus_7638#0      GAGTCACTATAAAAGTAATTAAAATCTAACCGTGACAATAACTTATTTAAATCTGTTGTG 240
consensus_7638#2      ------------------------------------------------------------
                                                                                  

consensus_7638#1      ------------------------------------------------------------
consensus_7638#3      ------------------------------------------------------------
consensus_7638#0      CCCGAATAGTGAGGACCATTGGTAGTAGTAATACCAGGTAACGATAGCGATTCGAAGTCT 300
consensus_7638#2      ------------------------------------------------------------
                                                                                  

consensus_7638#1      ------------------------------------------------------------
consensus_7638#3      ------------------------------------------------------------
consensus_7638#0      CGATGATGATTAACAACAGTATAGCCAGAATTGAAACCAACACTACTTTTAGCACCGGTT 360
consensus_7638#2      ------------------------------------------------------------
                                                                                  

consensus_7638#1      ------------------------------------------------------------
consensus_7638#3      ------------------------------------------------------------
consensus_7638#0      GAACAAGAAATATTCAATAAATCATACAATAATTTTGCTTGAGTATAGAATTTATTCACC 420
consensus_7638#2      ------------------------------------------------------------
                                                                                  

consensus_7638#1      ------------------------------------------------------------
consensus_7638#3      ------------------------------------------------------------
consensus_7638#0      ATCTCTTGCACTTTATCAGACAATTGATGGTTGTGGTCATCATCCATATTCATTAAATGA 480
consensus_7638#2      ------------------------------------------------------------
                                                                                  

consensus_7638#1      -------------------------------------------------------GAACA 5
consensus_7638#3      ------------------------------------------------------------
consensus_7638#0      TCATAGTAGTATTGTTGATTTGATAAATCCACAAATTGACAGCAATAGTTTAACAACTGC 540
consensus_7638#2      ------------------------------------------------------------
                                                                                  

consensus_7638#1      CAAAAATCCTCGTGACTACTGAGAATTATAAGTCAATCATTACATATATACTCATTTGGC 65
consensus_7638#3      ---------------------------ATAAACGTTCGAACACCGGTGGAGCAATAATGC 33
consensus_7638#0      AATATACATAATTTTATATCTGGATGAACAATAATGCTTGCGCTTGTAAACCAGCCAGGT 600
consensus_7638#2      ------------------------------------CATATACCTTGAACCCCAACAN-- 22
                                                                *                 

consensus_7638#1      AAAAATAAGA-GCAGTTTGAAATA-GAAGTAACATAACACTACAAAATTGTTGATATACA 123
consensus_7638#3      ATAAATGTAA-ACGATCCAAAACA-GTAATATTTT----CTGACAATTTATNTGAGTGAG 87
consensus_7638#0      AAGCTTCTTGTGCGATTTGAATTAATCGAATTTCT----TGATCAATATGTAAACGACGA 656
consensus_7638#2      -----TATGGCTCAATCCAATTCAAGGAACATTAT----AGATTGGATGCCCTACCTTGA 73
                           *      *  *   *   *          *                         

consensus_7638#1      CTTGAGAAATTCAATATTACACGGTGACATACTTAAAATTGGAATCTAGTTCTTCATCAT 183
consensus_7638#3      CTGCTG----CCAACTTTAT----TGAGA-ATTTAAAATTGGAATCTAGTTCTTCATCAT 138
consensus_7638#0      ATTAAGTGTGA--AAATTGTGCTTCAATTACATCAACCTGTAAATAATACTGTAAACTGT 714
consensus_7638#2      TTTGGTCACTCCTAGCTTTTATTTCAACC-TATT--CCTGTAAATAANACTGTAAACTGT 130
                       *           *  **        *     *     *   ***     * *  *   *

consensus_7638#1      CCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCT 243
consensus_7638#3      CCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCT 198
consensus_7638#0      CAATA----ATAAATGCCATATGACTACGAACTAGGAGGCGTTGATCTATACAAGA-CTG 769
consensus_7638#2      CAATA----ATAAATGCCATATGACTACGAACTAGGAGGCGTTGATNTATACAAGA-CTG 185
                      * ***    *  ** *   *    * *  ***      *        *** ***** *  

consensus_7638#1      GAACTGCACTTT--CATTTGTTGGGGGAGGTTTGTCTAAAATGCTATGCTGAATTTTACA 301
consensus_7638#3      GAACTGCACTTT--CATTTGTTGGGGGAGGTTTGTCTAAAATGCTATGCTGAATTTTACA 256
consensus_7638#0      CAATTGAATAAAAACATTGATTGGTGCTTTATTATAATTTACATGGAGCTGATTACGAGC 829
consensus_7638#2      CAATTGAATAAAAACATTGATTGGTGNTTTATTATAATTTACATGGAGCTGATTACGAGC 245
                       ** ** *      ****  **** *     ** *     *      ***** *   *  

consensus_7638#1      AGTGGTTCCACAACGTGAATTA--TTAATGTTGCTGAGATTATTTGAAATATTTAAATGA 359
consensus_7638#3      AGTGGTTCCACAACGTGAATTA--TTAATGTTGCTG------------------------ 290
consensus_7638#0      AGAGGTACGACGCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAATTGTGT 889
consensus_7638#2      AGAGGTACGACGCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAATTGTGT 305
                      ** *** * **  *   **  *  ** **    *                          

consensus_7638#1      TCAAGGAATGCCAAGAATAATTCGCCTCTTCCTAAAAGTAGGACATCTTTAACTAAGCAA 419
consensus_7638#3      ------------------------------------------------------------
consensus_7638#0      TCGACGGATAGCGAATAGAAATCTAAATAACCTGTCGTAAGCACGACAAATATTAGGAGA 949
consensus_7638#2      TNGACGGATAGCGAATAGAAATCTAAATAACCTGTNGTAAGCACGACAAATATTAGGAGA 365
                                                                                  

consensus_7638#1      ATATATTGAATTAATTTGTGTTCTTTCAAT------------------------------ 449
consensus_7638#3      ------------------------------------------------------------
consensus_7638#0      GAATAAACGTTCGAACACCGGTGGAGCAATAATGCATAAATGTAAACGATCCAAAACAGT 1009
consensus_7638#2      GAATAAACGTTCGAACACC----------------------------------------- 384
                                                                                  

consensus_7638#1      ------------------------------------------------------------
consensus_7638#3      ------------------------------------------------------------
consensus_7638#0      AATATTTTCTGACAATTTATTTGATTGAGCTGCTGCCAACTTTATTGAGAATCTAAAGAA 1069
consensus_7638#2      ------------------------------------------------------------
                                                                                  

consensus_7638#1      ------------------------------------------------------------
consensus_7638#3      ------------------------------------------------------------
consensus_7638#0      CGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCA 1129
consensus_7638#2      ------------------------------------------------------------
                                                                                  

consensus_7638#1      --------------
consensus_7638#3      --------------
consensus_7638#0      TTTGTTGNGGGAGG 1143
consensus_7638#2      --------------
                                    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)