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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7645#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 679 fasta sequence
[GTGGTGTCTGTTCACGTGCGTTGTAGTGTGGANTAAAGGGAGATGGTTCTAGGTTTTAATTATAAGGATGTTTGAGCGTTTTGGCTGCTCAATCGAAGCGTCAGTCCTGATTTTGGAAGTATGACTGGTTCACTTCAAAAAAAAGTTGAATGCACACTGGGCGAGGTGTGTTCCTGATAAACGACTTGCAATTCAGTTACTTCGAGTTACTCCGTTTATTTTTATGGCAAGTCGATCAACTATGGGCAGCCTTCTTTGCTGTGACGTAGAGGAACCTTTTGCTGTACTGTCTACATCTAATCAATATCCTAGGATCTATGATGGTAACTTATGGATTAGTGCAAAATTCGTGTCCTATGTACGCGACCCTTTACCCAAGTGCAGTCGCCGTATACGCGTTATCGAAACCTGCTTTTGGTTAATTAGAATTTTGAGCTATTCTATTCAGTATCTTGAGGAGAAGAAGGAGCACTTTGCTTTTATTGAATCTTTTTCAATTATCCAGGAATTTCATACCGATGCAACAGTTTTCTCTCAGATGATTGGAGTGACTGAAGCTATTACCAACACGAATAAAAACCATATTCTTTCACGTTCACCAGTACGGAAAAAAACCATACCCAAGAAGAAACGTGTTGATGCTAATAAAAATAAATGTGACTTTCCCAGATCATGCTCT]
[-] EMBL CD188975 [GTGGTGTCTGTTCACGTGCGTTGTAGTGTGGANTAAAGGGAGATGGTTCTAGGTTTTAATTATAAGGATGTTTGAGCGTTTTGGCTGCTCAATCGAAGCGTCAGTCCTGATTTTGGAAGTATGACTGGTTCACTTCAAAAAAAAGTTGAATGCACACTGGGCGAGGTGTGTTCCTGATAAACGACTTGCAATTCAGTTACTTCGAGTTACTCCGTTTATTTTTATGGCAAGTCGATCAACTATGGGCAGCCTTCTTTGCTGTGACGTAGAGGAACCTTTTGCTGTACTGTCTACATCTAATCAATATCCTAGGATCTATGATGGTAACTTATGGATTAGTGCAAAATTCGTGTCCTATGTACGCGACCCTTTACCCAAGTGCAGTCGCCGTATACGCGTTATCGAAACCTGCTTTTGGTTAATTAGAATTTTGAGCTATTCTATTCAGTATCTTGAGGAGAAGAAGGAGCACTTTGCTTTTATTGAATCTTTTTCAATTATCCAGGAATTTCATACCGATGCAACAGTTTTCTCTCAGATGATTGGAGTGACTGAAGCTATTACCAACACGAATAAAAACCATATTCTT ]
[+] EMBL CD153173 [ GGAACCTTTTGCTGTACTGTCTACATCTAATCAATATCCTAGGATCTATGATGGTAACTTATGGATTAGCGCAAAATTCGTGTCCTATGTACGCGACCCTTTACCCAAGTGCAGTCGCCGTATACGCGTTATCGAAACCTGCTTTTGGTTAATTAGAATTTTGAGCTATTCTATTCAGTATCTTGAGGAGAAGAAGGAGCACTTTGCTTTTATTGAATCTTTTTCAATTATCCAGGAATTTCATACCGATGCAACAGTTTTCTCTCAGATGATTGGAGTGACTGAAGCTATTAACAACACGAATAAAAACCATATTCTTTCACGTTCACCAGTACGGAAAAAAACCATACCCAAGAAGAAACGTGTTGATGCTAATAAAAATAAATGTGACTTTCCCAGATCATGCTCT]
consensusID : consensus_7645#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 627 fasta sequence
[CTCTCCTTTAAAACCATCGCCTAAAACGTCGTTTATTGTTGATAGCTTGCCTGGTGTTTTCGCTGTTGACAAGCCAACAAATTATATAGTCACAAATTCTCCAACAGTTATTGAAAATAAAGAAAATATCCCAATCACAGAAGCTCCAATGATGCATTCAACCTCACCCTGTTCAAAAGACTCATCACTTTTCAAGGATCTCTTCGATAGCAATGATGATTACTCTATTGAACTTAAAAATCTCTCGAACAGTTTTATGACGAGTGAAATATTAACGCCTTTCGCGAGATTATCTCAAAATAATAATACAGATATAATCACTTCCGAAGTAGCACATCCTCAGGCGCCAGTTTCCGAATCTCAAGACAATAAATTATCTTCACCCAGTACTCAGTATTTTTCTGTTCAGGATGCAAGTGATTTCTCAATTCTGAAAACTTCAAATTCTTCAGTTATGGAAATTAACTCAAATGGACAGCTTAATGCTAAACGTCCACGAAATTTCGCTTCAACTCATTCTCCCACTGCTTTGAGATCTGCAATAACTGTTTCATCGCCTATTATGTCGAGTATATCGTTGACAGATACCAATCGTCCACTTGGAAGTCTGGAATTNTCTTCATGTTC]
[+] EMBL CD079238 [CTCTCCTTTAAAACCATCGCCTAAAACGTCGTTTATTGTTGATAGCTTGCCTGGTGTTTTCGCTGTTGACAAGCCAACAAATTATATAGTCACAAATTCTCCAACAGTTATTGAAAATAAAGAAAATATCCCAATCACAGAAGCTCCAATGATGCATTCAACCTCACCCTGTTCAAAAGACTCATCACTTTTCAAGGATCTCTTCGATAGCAATGATGATTACTCTATTGAACTTAAAAATCTCTCGAACAGTTTTATGACGAGTGAAATATTAACGCCTTTCGCGAGATTATCTCAAAATAATAATACAGATATAATCACTTCCGAAGTAGCACATCCTCAGGCGCCAGTTTCCGAATCTCAAGACAATAAATTATCTTCACCCAGTACTCAGTATTTTTCTGTTCAGGATGCAAGTGATTTCTCAATTCTGAAAACTTCAAATTCTTCAGTTATGGAAATTAACTCAAATGGACAGCTTAATGCTAAACGTCCACGAAATTTCGCTTCAACTCATTCTCCCACTGCTTTGAGATCTGCAATAACTGTTTCATCGCCTATTATGTCGAGTATATCGTTGACAGATACCAATCGTCCACTTGGAAGTCTGGAATTNTCTTCATGTTC]
[+] EMBL CD087375 [ taccTTCGCTGTTGACAAGCCAACAAATTATATAGTCACAAATTCTCCAACAGTTATTGAAAATAAAGAAAATATCCCAATCACAGAAGCTCCAATGATGCATTCAACCTCACCCTGTTCAAAAGACTCATCACTTTTCAAGGATCTCTTCGATAGCAATGATGATTACTCTATTGAACTTAAAAATCTCTCGAACAGTTTTATGACGAGTGAAATATTAACGCCCTTCGCGAGATTATCTCAAAATAATAATACAGATATAATCACTTCCGAAGTAGCACATCCTCAGGCGCCAGTT ]
consensusID : consensus_7645#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence
[TTCGTGTCCTATGTACGCGACCCTTTACCCAAGTGCAGTCGCCGTATACGCGTTATCGAAACCTGCTTTTGGTTAATTAGAATTTCGAGCTATTCTATTCAGTATCTTGAGGAGAAGAAGGAGCACTTTGCTTTTATTGAATCTTTTTCAATTATCCAGGAATTTCATACCGATGCAACAGTTTTCTCTCAGATGATTGGAGTATCGAACAGTGGTTTCGTCCCGTCTTATTGAACTATCAAAATTTATTTCTTTAAAGTGTTAAACGATGTATCTGGACTGAAGCTATTAACAACACGAATAAAAACCATATTCTTTCACGTTCACCAGTACGGAAAAAAACCATACCCAAGAAGAAACGTGTTGATGCTAATAAAAATAAATGTGACTTTCCCAGATCATGCTCTAATATACATCCGACAGAAAATCCTCCTCAACACTACTCTCCTTTAAAACCATCGCCTAAAACGTCGTTTATTGTTGATAGCTTGCCTGGTGTTTTCGCTGTTGACAAGCCAACAAATTATATAGTCACAAATTCTCCAACAGTTATTGAAAATAAAGAACTTAATCTTTCTTAACGATAATATCCCAATCACAGAAGCTCCAA]
[-] EMBL CD122965 [TTCGTGTCCTATGTACGCGACCCTTTACCCAAGTGCAGTCGCCGTATACGCGTTATCGAAACCTGCTTTTGGTTAATTAGAATTTCGAGCTATTCTATTCAGTATCTTGAGGAGAAGAAGGAGCACTTTGCTTTTATTGAATCTTTTTCAATTATCCAGGAATTTCATACCGATGCAACAGTTTTCTCTCAGATGATTGGAGTATCGAACAGTGGTTTCGTCCCGTCTTATTGAACTATCAAAATTTATTTCTTTAAAGTGTTAAACGATGTATCTGGACTGAAGCTATTAACAACACGAATAAAAACCATATTCTTTCACGTTCACCAGTACGGAAAAAAACCATACCCAAGAAGAAACGTGTTGATGCTAATAAAAATAAATGTGACTTTCCCAGATCATGCTCTAATATACATCCGACAGAAAATCCTCCTCAACACTACTCTCCTTTAAAACCATCGCCTAAAACGTCGTTTATTGTTGATAGCTTGCCTGGTGTTTTCGCTGTTGACAAGCCAACAAATTATATAGTCACAAATTCTCCAACAGTTATTGAAAATAAAGAACTTAATCTTTCTTAACGATAATATCCCAATCACAGAAGCTCCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7645#0 GTGGTGTCTGTTCACGTGCGTTGTAGTGTGGANTAAAGGGAGATGGTTCTAGGTTTTAAT 60
consensus_7645#2 ------------------------------------------------------------
consensus_7645#1 ------------------------------------------------------------
consensus_7645#0 TATAAGGATGTTTGAGCGTTTTGGCTGCTCAATCGAAGCGTCAGTCCTGATTTTGGAAGT 120
consensus_7645#2 ------------------------------------------------------------
consensus_7645#1 ------------------------------------------------------------
consensus_7645#0 ATGACTGGTTCACTTCAAAAAAAAGTTGAATGCACACTGGGCGAGGTGTGTTCCTGATAA 180
consensus_7645#2 ------------------------------------------------------------
consensus_7645#1 ------------------------------------------------------------
consensus_7645#0 ACGACTTGCAATTCAGTTACTTCGAGTTACTCCGTTTATTTTTATGGCAAGTCGATCAAC 240
consensus_7645#2 ------------------------------------------------------------
consensus_7645#1 ------------------------------------------------------------
consensus_7645#0 TATGGGCAGCCTTCTTTGCTGTGACGTAGAGGAACCTTTTGCTGTACTGTCTACATCTAA 300
consensus_7645#2 ------------------------------------------------------------
consensus_7645#1 ------------------------------------------------------------
consensus_7645#0 TCAATATCCTAGGATCTATGATGGTAACTTATGGATTAGTGCAAAATTCGTGTCCTATGT 360
consensus_7645#2 ----------------------------------------------TTCGTGTCCTATGT 14
consensus_7645#1 -------------------------------------------------CTCTCCTTTAA 11
* **** *
consensus_7645#0 ACGCGACCCTTTACCCAAGTGCAGTCGCCGTATACGCGTTATCGAAACCTGCTTTTGGTT 420
consensus_7645#2 ACGCGACCCTTTACCCAAGTGCAGTCGCCGTATACGCGTTATCGAAACCTGCTTTTGGTT 74
consensus_7645#1 AACCATCGCCTAAAACGTCGTTTATTGTTGATAGCTTGCCTGGTGTTTTCGCTGTTGACA 71
* * * * * * * * * * * * *** ***
consensus_7645#0 AATTAG--AATTTTGAGCTATTCTATTCAGTATC--TTGAGGAGAAGAAGGAGCACTTTG 476
consensus_7645#2 AATTAG--AATTTCGAGCTATTCTATTCAGTATC--TTGAGGAGAAGAAGGAGCACTTTG 130
consensus_7645#1 AGCCAACAAATTATATAGTCACAAATTCTCCAACAGTTATTGAAAATAAAGAAAATATCC 131
* * **** * **** * * ** ** ** ** ** * *
consensus_7645#0 CTTTTATTGAATCTTTTTCAATTATCCAGG-AATTTCATACCGATGCAACAGTTTTCTCT 535
consensus_7645#2 CTTTTATTGAATCTTTTTCAATTATCCAGG-AATTTCATACCGATGCAACAGTTTTCTCT 189
consensus_7645#1 CAATCACAGAAGC---TCCAATGATGCATTCAACCTCACCCTGTT-CAAAAGACTCATCA 187
* * * *** * * **** ** ** ** *** * * * *** ** * **
consensus_7645#0 CAGATGATTGGAGT---------------------------------------------- 549
consensus_7645#2 CAGATGATTGGAGTATCGAACAGTGGTTTCGTCCCGTCTTATTGAACTATCAAAATTTAT 249
consensus_7645#1 CTTTTCAAGGATCTCTTCGATAGCAATGATGATTACTCT-ATTGAACTTAAAAA------ 240
* * * * *
consensus_7645#0 ----------------------------G-ACTGAAGCTATTACCAACACGAATAAAAAC 580
consensus_7645#2 TTCTTTAAAGTGTTAAACGATGTATCTGG-ACTGAAGCTATTAACAACACGAATAAAAAC 308
consensus_7645#1 TCTCTCGAACAGTTTTATGACGAGTGAAATATTAACGCCTTTCGCGAGATTATCTCAAA- 299
* * * ** ** * * * * ***
consensus_7645#0 CATATTCTTTCACGT-TCACCAGTACGGAAAAAAACCATACCCAAGAAGAAACGTGTTGA 639
consensus_7645#2 CATATTCTTTCACGT-TCACCAGTACGGAAAAAAACCATACCCAAGAAGAAACGTGTTGA 367
consensus_7645#1 -ATAATAATACAGATATAATCACTTCCGAAGTAGCACATCCTCAGGCGCCAGT-TTCCGA 357
*** * * ** * * * ** * * *** * *** * ** * * * **
consensus_7645#0 TGCTAATAAAAATAAATGTGACTTTCCCAGATCATGCTCT-------------------- 679
consensus_7645#2 TGCTAATAAAAATAAATGTGACTTTCCCAGATCATGCTCTAATATACATCCGACAGAAAA 427
consensus_7645#1 ATCTCAAGACAATAAATTATCTTCACCCAG----TACTC-AGTATTTTTCTGTTCAGGA- 411
** * * ******* * ***** * ***
consensus_7645#0 ------------------------------------------------------------
consensus_7645#2 TCCTCCTCAACACTACTCTCCTTTAAAACCATCGCCTAAAACGTCGTTTATTGTTGATAG 487
consensus_7645#1 ---TGCAAGTGATTTCTCAATTCTGAAAACTTCA---AATTCTTCAGTTATGGAAATTAA 465
consensus_7645#0 ------------------------------------------------------------
consensus_7645#2 CTTGCCTGGTGTTTTCGCTGTTGACAAGCCAACAAATTATATAGTCACAAATTCTCCAAC 547
consensus_7645#1 CTCAAATGGACAGCTTAATGCTAAACGTCCACGAAATTTCGCTTCAACTCATTCTCCCAC 525
consensus_7645#0 ------------------------------------------------------------
consensus_7645#2 AGTTATTGAA-----AATAAAGAACTTAATCTTTCTTAACGATAATATCCCAATCACAGA 602
consensus_7645#1 TGCTTTGAGATCTGCAATAACTGTTTCATCGCCTATTATGTCGAGTATATCGTTGACAGA 585
consensus_7645#0 ------------------------------------------
consensus_7645#2 AGCTCCAA---------------------------------- 610
consensus_7645#1 TACCAATCGTCCACTTGGAAGTCTGGAATTNTCTTCATGTTC 627
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||