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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7647#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1221 fasta sequence
[TTTTTTTTTTATCTGTTTATTAAAAGGATTTTATTCTGCAAAACCGTACTATCCCTTTCTATTCGTAAACTAAATTAAAATGACAAACAAATCTGATTAAAAAAAGGATTAACAATAGTCAAGTATGATTGTTTACTTTATAAACACTGATGAGCTTTTACGCACAAATCTGAGGTTATACCCCCCGCACTCATATGAACGCGTTTGTGGTATGTAAATGTTATACTGAAAGAAACTCAATCATTCATTCATAGTTGTAATTAGTTAATTTCAGTATGAAAATACTAATATGTTATCATAAGTTCATTCTGACACCAAATAACATGTTTATATTTTGTTTTCAATGCATGCTCTAAATCAGTTATATGTGAAACATCCTGTATTTCACAAGTACATTTCACCTGAACTTGAAGTATACCTGATGTTGACCAAATACGTTCGTGACTAATGTCTTTTATGTTAGCTCCAATATCGTTCAAAATTAGACATAGTTCTGAAATACTTTCAGGTCGATCATTTAAAACAACTATGAATCGACAAAGATGACCTTCAAGTGCTAAACCTTTATCAATAACACGATTTAGTGTTGAAATATCAATATTCCCTCCACTTAAAATGCATACAACTTTTTTTCCGATTAATTCAGGCAAAACGTTTGCCATAATTAAAGCTAATGAAGTAGCCCCAGAACATTCTACAACAGATTTCTCAAATTCTAATAAACGAACAACTGCACGATAGATATATGTTTCATCGATAGTTATCACTTTATCAACCAATTTATGAGCTGTTTCAAATGAATTCACACCAGCCACAGAAATAGCCAGGCCATCTGCAGATGATTGACAATTTTCTGTGTAGACTGGTTTACCAGCGAGCATAGCTTCATGAAAACCAGGACAACGATTAGATTCTACACCAACTATCATAACTTCTGGTCGAATAGATTTAACTGCCACACAAAGTCCAGCTAATAAACCACCTCCACCAACTGGTACAATAATAGCATCCACATCAGGAACTTGCTCTAAGATTTCTACACCAATAGTACCTTGTCCAGATAAAATATGTGGATGATCATAACCATTGATTAAAAGTAAGTTGTTTAACTTTGCTATTTTTGAAGCATACAGTTTACTTTCAAAAACATTATTACCTTTCAGTAAAACAAGTCCACCATACTTCTTACAACGTTCTTGTTTCATTAAACTTGAGTTTACA]
[+] EMBL CD075474 [TTTTTTTTTTATCTGTTTATTAAAAGGATTTTATTCTGCAAAACCGTACTATCCCTTTCTATTCGTAAACTAAATTAAAATGACAAACAAATCTGATTAAAAAAAGGATTAACAATAGTCAAGTATGATTGTTTACTTTATAAACACTGATGAGCTTTTACGCACAAATCTGAGGTTATACCCCCCGCACTCATATGAACGCGTTTGTGGTATGTAAATGTTATACTGAAAGAAACTCAATCATTCATTCATAGTTGTAATTAGTTAATTTCAGTATGAAAATACTAATATGTTATCATAAGTTCATTCTGACACCAAATAACATGTTTATATTTTGTTTTCAATGCATGCTCTAAATCAGTTATATGTGAAACATCCTGTATTTCACAAGTACATTTCACCTGAACTTGAAGTATACCTGATGTTGACCAAATACGTTCGTGACTAATGTCTTTTATGTTAGCTCCAATATCGTTCAAAATTAGACATAGTTCTGAAATACTTTCAGGTCGATCATTTAAAACAACTATGAATCGACAAAGATGACCTTCAAGTGCTAAACCTTTATCAATAACACGATTTAGTGTTGAAATATCAATATTCCCTCCACTTAAAATGCATACAACTTTTTTTCCGATTAATTCAGGCAAAACGTTTGCCATAATTAAAGCTAATGAAGTAGCCCCAGAACATTCTACAACAGATTTCTCAAATTCTAATAAACGAACAACTGCACGATAGATATATGTTTCATCGATAGTTATCACTTTATCAACCAATTTATGAGCTGTTTCAAATGAATTCACACCAGCCACA ]
[+] EMBL CD076515 [ tgAAAAGGATTTTATTATGCAAAACCGTACTATCCCTTTCTATTCGTAAACTAAATTAAAATGACAAACAAATCTGATTAAAAAAAGGATTAACAATAGTCAAGTATGATTGTTTACTTTATAAACACTGATGAGCTTTTACGCACAAATCTGAGGTTATACCCCCCGCACTCATATGAACGCGTTTGTGGTATGTAAATGTTATACTGAAAGAAACTCAATCATTCATTCATAGTTGTAATTAGTTAATTTCAGTATGAAAATACTAATATGTTATCATAAGTTCATTCTGACACCAAATAACATGTTTATATTTTGTTTTCAATGCATGCTCTAAATCAGTTATATGTGAAACATCCTGTATTTCACAAGTACATTTCACCTGAACTTGAAGTATACCTGATGTTGACCAAATACGTTCGTGACTAATGTCTTTTATGTTAGCTCCAATATCGTTCAAAATTAGACATAGTTCTGAAATACTTTCAGGTCGATCATTTAAAACAACTATGAATCGACAAAGATGACCTTCAAGTGCTAAACCTTTATCAATAACACGATTTAGTGTTGAAATATCAATATTCCCTCCACTTAAAATGCATAnca ]
[-] EMBL CD082932 [ CACCTGAACTTGAAGTATACNTGATGTTGACCAAATACGTTCGTGACTAATGTCTTTTATGTTAGCTCCAATATCGTTCANAATTAGACATAGTTCTGAAATACTTTCAGGTCGATCATTTAAAACAACTATGAATCGACAAAGATGACCTTCAAGTGCTAAACCTTTATCAATAACACGATTTAGTGTTGAAATATCAATATTCCCTCCACTTAAAATGCATACAACTTTTTTTCCGATTAATTCAGGCAAAACGTTTGCCATAATTAAAGCTAATGAAGTAGCCCCAGAACATTCTACAACAGATTTCTCAAATTCTAATAAACGAACAACTGCACGATAGATATATGTTTCATCGATAGTTATCACTTTATCAACCAATTTATGAGCTGTTTCAAATGAATTCACACCAGCCACAGAAATAGCCAGGCCATCTGCAGATGATTGACAATTTTCTGTGTAGACTGGTTTACCAGCGAGCATAGCTTCATGAAAACCAGGACAACGATTAGATTCTACACCAACTATCATAACTTCTGGTCGAATAGATTTAACTGCCACACAAAGTCCAGCTAATAAACCACCTCCACCAACT ]
[-] EMBL CD083619 [ TTTATCAACCAATTTATGAGCTGTTTCAAATGAATTCACACCAGCCACAGAAATAGCCAGGCCATCTGCAGATGATTGACAATTTTCTGTGTAGACTGGTTTACCAGCGAGCATAGCTTCATGAAAACCAGGACAACGATTAGATTCTACACCAACTATCATAACTTCTGGTCGAATAGATTTAACTGCCACACAAAGTCCAGCTAATAAACCACCTCCACCAACTGGTACAATAATAGCATCCACATCAGGAACTTGCTCTAAGATTTCTACACCAATAGTACCTTGTCCAGATAAAATATGTGGATGATCATAACCATTGATTAAAAGTAAGTTGTTTAACTTTGCTATTTTTGAAGCATACAGTTTACTTTCAAAAACATTATTACCTTTCAGTAAAACAAGTCCACCATACTTCTTACAACGTTCTTGTTTCATTAAACTTGAGTTTACA]
consensusID : consensus_7647#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 814 fasta sequence
[NNGAAACGNNGTTTCTAGCACCACCAAACTATTATTATTATTAAGTTTTGTCTTGAGATGCCACAGCCCTCTATAATTGAATCGTATCCATGCAGTGAAATCAGAAGTCAGAAGCGAGGAGGTTCGAAGATATACTTGATAGGTTATCAACATATCGAGAAGCGACTGATCTAGGGTGGCTAGTGATCTCAGGAGGAGTTGATCACGGCGTCCCCACCCGTGATCTGGTGCGGATGCGTGACTGGGCGCCATCAGTTAGAAGATTAATTTGATATATACCGGACACATGGTTGATGAACAATTAGTGACAAATATACCGTTACCAAATGCAGAAGATCCAGATTTGTTAGATCCGAATAGTGATCCAGACCATCCTAAAGTGATTGTGTTTGAAGAAGTAAAGGCTGCTAGTGAACTTATAAAAGATGGAGTAATTTATACACCGTGTAAAAAGTCTCAGCTCTCATTGGAGTACAATATGGATATTTACTTTAAAAAGGAATTTCTTCAAGTAACTGGGAGGTTGATATATTCGAATTACGTTTTAATGTCTTTATGACTTTCTTTTTACTAACAGCTTTAAAGATAGAGGAGCTCGTAATGCATTACTTCAGTTGACGTCAGAAGAAGCTAGACGTGGTGTAATTGCATGTAGTGCTGGTAACCATGCAATTAGTTTGGCATATCATGGAATTTAATGAAACAAGAACGTTGTAAGAAGTATGGTGGACTTGTTTTACTGAAAGAGTAAACTGTATGCTTCANAATAGCANAGTTAAACAACTTACTTTTAATCAATGGTTATGATCATCCA]
[+] EMBL CD081740 [NNGAAACGNNGTTTCTAGCACCACCAAACTATTATTATTATTAAGTTTTGTCTTGAGATGCCACAGCCCTCTATAATTGAATCGTATCCATGCAGTGAAATCAGAAGTCAGAAGCGAGGAGGTTCGAAGATATACTTGATAGGTTATCAACATATCGAGAAGCGACTGATCTAGGGTGGCTAGTGATCTCAGGAGGAGTTGATCACGGCGTCCCCACCCGTGATCTGGTGCGGATGCGTGACTGGGCGCCATCAGTTAGAAGATTAATTTGATATATACCGGACACATGGTTGATGAACAATTAGTGACAAATATACCGTTACCAAATGCAGAAGATCCAGATTTGTTAGATCCGAATAGTGATCCAGACCATCCTAAAGTGATTGTGTTTGAAGAAGTAAAGGCTGCTAGTGAACTTATAAAAGATGGAGTAATTTATACACCGTGTAAAAAGTCTCAGCTCTCATTGGAGTACAATATGGATATTTACTTTAAAAAGGAATTTCTTCAAGTAACTGGGAGGTTGATATATTCGAATTACGTTTTAATGTCTTTATGACTTTCTTTTTACTAACAGCTTTAAAGATAGAGGAGCTCGTAATGCATTACTTCAGTTGACGTCAGAAGAAGCTAGACGTGGTGTAATTGCATGTAGTGCTGGTAACCATGCAATTAGTTTGGCATATCATGGAATTTAATGAAACAAGAACGTTGTAAGAAGTATGGTGGACTTGTTTTACTGAAAGAGTAAACTGTATGCTTCANAATAGCANAGTTAAACAACTTACTTTTAATCAATGGTTATGATCATCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7647#0 TTTTTTTTTTATCTGTTTATTAAAAGGATTTTATTCTGCAAAACCGTACTATCCCTTTCT 60
consensus_7647#1 ------------------------------------------------------------
consensus_7647#0 ATTCGTAAACTAAATTAAAATGACAAACAAATCTGATTAAAAAAAGGATTAACAATAGTC 120
consensus_7647#1 ---------------------------------------------------------NNG 3
consensus_7647#0 AAGTATGATTGTTTACTTTAT-AAACACTGATGAGCTTTTACGCACAAATCTGAGGTTAT 179
consensus_7647#1 AAACGNNGTTTCTAGCACCACCAAACTATTATTA-TTATTAAGTTTTGTCTTGAGATGCC 62
** ** * * * **** * ** * * *** * **** *
consensus_7647#0 ACCCCCCGCACTCATATGAACGCGTTTGTGGTATGTAAATGTTATACTGAAAGAAACTCA 239
consensus_7647#1 ACAGCCCTCTATAATTGAATCGTATCCATGCAGTGAAATCAGAA----GTCAGAAGCGAG 118
** *** * * ** * ** * ** ** ** * * **** *
consensus_7647#0 ATCATTCATTCATAGTTGTAATTAGTTAATTTCAGTATGAAAATACTAATATGTTATCAT 299
consensus_7647#1 GAGGTTCGAAGATATACTTGATAGGTTATCAACA-TATCGAGAAGCGACTG----ATCTA 173
*** *** * ** **** ** *** * * * * * ***
consensus_7647#0 AAGTTCATTCTGACACCAAATAACATGTTTATATTTTGTTTTCAATGCATGCTCTAAATC 359
consensus_7647#1 GGGTGGCTAGTGATCTCAGG--AGGAGTTGATCACGGCGTCCCCACCCGTGATCTGGTGC 231
** * *** ** * *** ** * * * * ** *** *
consensus_7647#0 AGTTATATGTGAAACATCCTGTATTTCACAAGTACATTTCACCTGAACTTGAAGTATACC 419
consensus_7647#1 GGATGCGTGACTGGGCGCCATCAGTTAGAAGATTAATTTGATATATACCGGACACATGGT 291
* * ** ** * ** * * **** * * ** ** **
consensus_7647#0 TGATGTTGACCAAATACGTTCGTGACTAATGTCTTTTATGTTAGCTCCAATATCGTTCAA 479
consensus_7647#1 TGATG---AACAA-----TTAGTGACAAATATACCGT-TACCAAATGCAGAA--GATCCA 340
***** * *** ** ***** *** * * * * * ** * * ** *
consensus_7647#0 AATTAGACATAGTTCTGAAATACTTTCAGGTCGATCATTTAAAACAACTATGAATCGACA 539
consensus_7647#1 GATTTG--TTAGATCCGAATAGTGATCCAGACCATC--CTAAAGTGATTGTGTTTGAAGA 396
*** * *** ** *** ** * * *** **** * * ** * * *
consensus_7647#0 AAGATGACCTTCAAGTGCTAAACCTTTATCAATAACACGATTTAGTGTTGAAATATCAAT 599
consensus_7647#1 AGTAAAGGCTGCTAGTG---AACTTATA---------------AAAGATGGAGTA---AT 435
* * ** * **** *** * ** * * ** * ** **
consensus_7647#0 ATTCCCTCCACTTAAAATGCATACAACTTTTTTTCCGATTAATTCAGGCAAAACGTTTGC 659
consensus_7647#1 TTATACACCGTGTAAAAAGTCT-CAGCTCTCATTGGAGTACAATATGGATATTTACTT-- 492
* * ** ***** * * ** ** * ** * * * ** * **
consensus_7647#0 CATAATTAAAGCTAATGAAGTAGCCCCAGAACATTCTACAACAGATTTCTCAAATTCTAA 719
consensus_7647#1 TAAAAAGGAATTTCTTCAAGTAACTG-GGAGGTTGATATATTCGAATT---ACGTTTTAA 548
* ** ** * * ***** * ** * ** * ** ** * ** ***
consensus_7647#0 TAAACGAACAACTGCACGATAGATATATGTTTCATCGATAGTTATCACTTTATCAACCAA 779
consensus_7647#1 TGTCTTTATGACTTTCTTTTTACTAACAGCTTTAAAGATAG--AGGAGCTCGT------- 599
* * *** * ** * ** * ***** * * * *
consensus_7647#0 TTTATGAGCTGTTTCAAATGAATTCACACCAGCCACAGAAATAGCCAGGCCATCTGCAGA 839
consensus_7647#1 --AATGCATTACTTCAGTTGACGTCAGAAGAAGC-TAGACGTGGTGTAATTGCATGTAG- 655
*** * **** *** *** * * * *** * * ** **
consensus_7647#0 TGATTGACAATTTTCTGTGTAGACTGGTTTACCAGCGAGCATAGCTTCATGAAAACCAGG 899
consensus_7647#1 -TGCTGGTAACCATGCAATTAGTTTGGCATATCATGGAA------TTTAATGAAACAAGA 708
** ** * *** *** ** ** ** ** * **** **
consensus_7647#0 ACAACGATTAGATTCTACACCAACTATCATAACTTCTGGTCGAATAGATTTAACTGCCAC 959
consensus_7647#1 ACGTTGTAAGAAGTATGGTGGACTTGTTTTA----CTGAAAGAGTAAACTGTA-TGCTTC 763
** * * * * * * * ** *** ** ** * * * *** *
consensus_7647#0 ACAA-AGTCCAGCTAATAAACC-ACCTCCACCAACTGGTACAATAATAGCATCCACATCA 1017
consensus_7647#1 ANAATAGCANAGTTAAACAACTTACTTTTAATCAATGGT----TATGATCATCCA----- 814
* ** ** ** *** *** ** * * * **** ** * ******
consensus_7647#0 GGAACTTGCTCTAAGATTTCTACACCAATAGTACCTTGTCCAGATAAAATATGTGGATGA 1077
consensus_7647#1 ------------------------------------------------------------
consensus_7647#0 TCATAACCATTGATTAAAAGTAAGTTGTTTAACTTTGCTATTTTTGAAGCATACAGTTTA 1137
consensus_7647#1 ------------------------------------------------------------
consensus_7647#0 CTTTCAAAAACATTATTACCTTTCAGTAAAACAAGTCCACCATACTTCTTACAACGTTCT 1197
consensus_7647#1 ------------------------------------------------------------
consensus_7647#0 TGTTTCATTAAACTTGAGTTTACA 1221
consensus_7647#1 ------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||