These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7655#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 465 fasta sequence [CACCTGGATGGCTGTGCTGTTGCCGATGAAAGTGGCAGACATCTTGAGACCACGTGGTGGAATGTCGCAGACAGCTGTCTTAACATTGTTGGGGATCCATTCGACAAAGTAGGAGGAGTTCTTGTTCTGGACATTGAGCATCAGTTCGTCAACTTCCTTCATGGACATGCGGCCTCTGAAGATGGCTGCAACTGTGAGGTAGCGGCCGTGGCGTGGGTCGCAGGCGGCCATCATGTTCTTGGCATCAAACATCTGCTGTGTCAACTCTGGGACAGTAAGGGCGCGGTACTGCTGTGAGTCCCTGGATGTAAGGNGAGCGAACCCTGGCATGGAGAAGTGGAGA-CGGGNGAANGGCACCATGNTTGACTGCAGTTTTTCTCAGTCAGCGNTCAACTGGNNCAGG-AANCCTGAGCATGTGGTCACAC-CGACATGGNTGCGCTGACTAGATGNNNTCAGTCACCATAG] [+] EMBL CD138263 [CACCTGGATGGCTGTGCTGTTGCCGATGAAAGTGGCAGACATCTTGAGACCACGTGGTGGAATGTCGCAGACAGCTGTCTTAACATTGTTGGGGATCCATTCGACAAAGTAGGAGGAGTTCTTGTTCTGGACATTGAGCATCAGTTCGTCAACTTCCTTCATGGACATGCGGCCTCTGAAGATGGCTGCAACTGTGAGGTAGCGGCCGTGGCGTGGGTCGCAGGCGGCCATCATGTTCTTGGCATCAAACATCTGCTGTGTCAACTCTGGGACAGTAAGGGCGCGGTACTGCTGTGAGTCCCTGGATGTAAGGNGAGCGAACCCTGGCATGGAGAAGTGGAGA CGGGNGAANGGCACCATGNTTGACTGCAGTTTTTCTCAGTCAGCGNTCAACTGGNNCAGG AANCCTGAGCATGTGGTCACAC CGACATGGNTGCGCTGACTAGATGNNNTCAGTCACCATAG] [+] EMBL CD138350 [CACCTGGATGGCTGTGCTGTTGCCGATGAAAGTGGCAGACATCTTGAGACCACGTGGTGGAATGTCGCAGACAGCTGTCTTAACATTGTTGGGGATCCATTCGACAAAGTAGGAGGAGTTCTTGTTCTGGACATTGAGCATCTGTTCGTCAACTTCCTTCATGGACATGCGGCCTCTGAAGATGGCTGCAACTGTGAGGTAGCGGCCGTGGCGTGGGTCGCAGGCGGCCATCATGCTCTTGGCATCAAACATCTGCTGTGTCAACTCTGGGACAGTAAGGGCGCGGTACTGCTGTGAGCCCCTGGATGTAAGGNGAGCGAACCCTGGCATGAAGAAGTGGAGATCGGG GAAGGGCACCATGNTTGACTGCAGTTTTTCTCAGTCAGCGNTCAACTGG CCAGGNAANCCTGAGCATGTGGTCACACGGGACATG TGCGCTGACTAGATG GNTCAGTCACat ] consensusID : consensus_7655#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 233 fasta sequence [CCAGTGCCGCCACCAAGTGAATGTGTGAGTTGGAAACCCTGTAAGCAGTCGCAGTTTTCAGCCTCTTTCCTAACTACATCCATAACTGAATATACGAGCTCAGCTCCCTCTGCGTAGTGACATATAGCCCAGTTGTTGCCAGCACCTGACTGTCCAAATACAAAGTTATCTGGTCTGAAAATATGACCAAAAGGCCCAGATCTGACACTGTCCATTGTACCGGGTTCCAAATC] [-] EMBL CD130805 [CCAGTGCCGCCACCAAGTGAATGTGTGAGTTGGAAACCCTGTAAGCAGTCGCAGTTTTCAGCCTCTTTCCTAACTACATCCATAACTGAATATACGAGCTCAGCTCCCTCTGCGTAGTGACATATAGCCCAGTTGTTGCCAGCACCTGACTGTCCAAATACAAAGTTATCTGGTCTGAAAATATGACCAAAAGGCCCAGATCTGACACTGTCCATTGTACCGGGTTCCAAATC] [+] EMBL CD144580 [ GAGTTGGAAACCCTGTAAGCAGTCGCAGTTTTCAGCCTCTTTCCTAACTACATCCATAACTGAATCTACGAGCTCAGCTCCCTCTGTGTAGTGACCTTTAACCCAGT ] consensusID : consensus_7655#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 213 fasta sequence [ATCTGTTCGTCAACCTCCTTCATGGACATGCGGCCTCTGAAGATGGCTGCAACTGTGAGGTAGCGGCCGTGGCGTGGGTCGCAGGCGGCCATCATGTTCTTGGCATCAAACATCTGCTGTGTCAACTCTGGGACAGTAAGGGCGCGGTACTGCTGTGAGCTGAGCTCGTAGATTCAGTTATGGATGTAGTTAGGAAAGAGGCTGAAAACTGCG] [+] EMBL CD132431 [ATCTGTTCGTCAACCTCCTTCATGGACATGCGGCCTCTGAAGATGGCTGCAACTGTGAGGTAGCGGCCGTGGCGTGGGTCGCAGGCGGCCATCATGTTCTTGGCATCAAACATCTGCTGTGTCAACTCTGGGACAGTAAGGGCGCGGTACTGCTGTGAGCTGAGCTCGTAGATTCAGTTATGGATGTAGTTAGGAAAGAGGCTGAAAACTGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7655#0 CACCTGGATGGCTGTGCTGTTGCCGATGAAAGTGGCAGACATCTTGAGACCACGTGGTGG 60 consensus_7655#2 ------------------------------------------------------------ consensus_7655#1 ------------------------------------------------------------ consensus_7655#0 AATGTCGCAGACAGCTGTCTTAACATTGTTGGGGATCCATTCGACAAAGTAGGAGGAGTT 120 consensus_7655#2 ------------------------------------------------------------ consensus_7655#1 ------------------------------------------------------------ consensus_7655#0 CTTGTTCTGGACATTGAGCATCAGTTCGTCAACTTCCTTCATGGACATGCGGCCTCTGAA 180 consensus_7655#2 -------------------ATCTGTTCGTCAACCTCCTTCATGGACATGCGGCCTCTGAA 41 consensus_7655#1 --------------------------CCAGTGCCGCCACCAAGTGAATGTGTGAGTTGGA 34 * * ** ** * *** * ** * consensus_7655#0 GATGGCTGCAACTGTGAGGTAGCGGCCGTGGCGTGGGTCGCAGGCGGCCATCATGTTCTT 240 consensus_7655#2 GATGGCTGCAACTGTGAGGTAGCGGCCGTGGCGTGGGTCGCAGGCGGCCATCATGTTCTT 101 consensus_7655#1 AACC-CTGTAA----GCAGTCGCAGTTTTCAGCCTCTTTCCTAACTACATCCATAA-CTG 88 * *** ** * ** ** * * * * * * *** ** consensus_7655#0 GGCATCAAACATCTGCTGTGTCAACTCTGGGACAGTAAGGGCGCGGTACTGCTGTGAGTC 300 consensus_7655#2 GGCATCAAACATCTGCTGTGTCAACTCTGGGACAGTAAGGGCGCGGTACTGCTGTGAG-- 159 consensus_7655#1 AATATACGAGCTCAGCTCCCTCTGCGTAGTGACAT--ATAGCCCAGT--TGTTGCCAGCA 144 ** * ** *** ** * * **** * ** * ** ** ** ** consensus_7655#0 CCTGGATGTAAGGNGAGCGAACC--CTGGCATGGAGAAGTGG--AGACGGGNGAANGGCA 356 consensus_7655#2 -CTGA--GCTCGTAGATTCAGTT--ATGG-ATGTAGTTAGGA--AAGAGGCTGAAAACTG 211 consensus_7655#1 CCTGACTGTCCAAATACAAAGTTATCTGGTCTGAAAATATGACCAAAAGGCCCAGATCTG 204 *** * * * *** ** * * * ** * consensus_7655#0 CCATGNTTGACTGCAGTTTTTCTCAGTCAGCGNTCAACTGGNNCAGGAANCCTGAGCATG 416 consensus_7655#2 CG---------------------------------------------------------- 213 consensus_7655#1 ACACTGTCCATTGTACCGGGTTCCAAATC------------------------------- 233 consensus_7655#0 TGGTCACACCGACATGGNTGCGCTGACTAGATGNNNTCAGTCACCATAG 465 consensus_7655#2 ------------------------------------------------- consensus_7655#1 ------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||