These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_766#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [GGGTTTGTGAAAGAAATTGCCGACCGTGTAAAATGGATTGCAGAGGTCATTGTTCATCCGGGCGAAAACGAACTACAAGCTCTTGCGGAAGGAGCGTTGCGCGTTTTACGCGGCGAGGAAAAAGAAAAAGAATACCCGGGGAATTTCGTTACAACGAATATGAAGTAGAAAGGAGAGGAATAAAATGGCAAAAGAGTACGATCTCGTCATATTAGGCGGCGGCACAGGCGGATATGTAGCGGCGATTCGTGCAGCACAATTAGGCTTAAAAACAGCCGTTGTCGAAAAAGGAAAGCTCGGCGGAACGTGCTTGCATGCAGGCTGCATTCCGAGCAAAGCGTTGCTTCGCAGCGCAGAAGTGTACGCGCAAACGAAAGAAAGCGAAAAGTTTGGCGTGCTTGCTAGCGATGTAAAACTAGATTTTCCGAAAGTGCAAGCGCGCANAAGAAGTATTGTTGAGCAATTACATANAGGCGTTCAGCATTTAATGAAAAAAGGGAAAGTCGATGTATACGAAGGAACAGGCCGCATTTTAGGCCCTTCGATT] [+] EMBL CD158381 [GGGTTTGTGAAAGAAATTGCCGACCGTGTAAAATGGATTGCAGAGGTCATTGTTCATCCGGGCGAAAACGAACTACAAGCTCTTGCGGAAGGAGCGTTGCGCGTTTTACGCGGCGAGGAAAAAGAAAAAGAATACCCGGGGAATTTCGTTACAACGAATATGAAGTAGAAAGGAGAGGAATAAAATGGCAAAAGAGTACGATCTCGTCATATTAGGCGGCGGCACAGGCGGATATGTAGCGGCGATTCGTGCAGCACAATTAGGCTTAAAAACAGCCGTTGTCGAAAAAGGAAAGCTCGGCGGAACGTGCTTGCATGCAGGCTGCATTCCGAGCAAAGCGTTGCTTCGCAGCGCAGAAGTGTACGCGCAAACGAAAGAAAGCGAAAAGTTTGGCGTGCTTGCTAGCGATGTAAAACTAGATTTTCCGAAAGTGCAAGCGCGCANAAGAAGTATTGTTGAGCAATTACATANAGGCGTTCAGCATTTAATGAAAAAAGGGAAAGTCGATGTATACGAAGGAACAGGCCGCATTTTAGGCCCTTCGATT] consensusID : consensus_766#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence [GTGAGAGTCAATGCGAGCGTGTTGACGGTGGGGCTTGCTGACGGAACAGAAGTTGAGAAGGTGATGTACCGACCGGGTCAAATGGATTGCAGGAGAGTCGATTGTGTGACCTGCAGGAAAACGAATTGCCAGCGCTCGCGGAACGAGCGCCGGGCGTGCTACGCTATGAAAAGACTGAGAACGAATATCCAGGCATATTTTGATGCATACGAATATGATCGCATGGGAAAGGTGCAGACAGAATGGCCAGGAGTGCGACTCTGCGCATATTAGGCGGCGGGACAGGTGGCTATGTTACGGCGATTCGTGCGGCGCAATTAGGCTTAAAACAGCCGTTGTCGAAAAAGGAAGCTCGGCGGAACGTGCTTGCACG] [+] EMBL CD164951 [GTGAGAGTCAATGCGAGCGTGTTGACGGTGGGGCTTGCTGACGGAACAGAAGTTGAGAAGGTGATGTACCGACCGGGTCAAATGGATTGCAGGAGAGTCGATTGTGTGACCTGCAGGAAAACGAATTGCCAGCGCTCGCGGAACGAGCGCCGGGCGTGCTACGCTATGAAAAGACTGAGAACGAATATCCAGGCATATTTTGATGCATACGAATATGATCGCATGGGAAAGGTGCAGACAGAATGGCCAGGAGTGCGACTCTGCGCATATTAGGCGGCGGGACAGGTGGCTATGTTACGGCGATTCGTGCGGCGCAATTAGGCTTAAAACAGCCGTTGTCGAAAAAGGAAGCTCGGCGGAACGTGCTTGCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_766#0 ------------------------------------------------GGGTTTGTGAAA 12 consensus_766#1 GTGAGAGTCAATGCGAGCGTGTTGACGGTGGGGCTTGCTGACGGAACAGAAGTTGAGAAG 60 * *** *** consensus_766#0 GAAAT-TGCCGACCGTGTAAAATGGATTGCAGAGG---TCATTGT-TCATCCGGGCGAAA 67 consensus_766#1 GTGATGTACCGACCGGGTCAAATGGATTGCAGGAGAGTCGATTGTGTGACCTGCAGGAAA 120 * ** * ******* ** ************* * ***** * * * * **** consensus_766#0 ACGAACTACAAGCTCTTGCGGAAGGAGCGTTGCGCGTTTTACGCGGCGAGGAAAAAGAAA 127 consensus_766#1 ACGAATTGCCAGCGCTCGCGGAACGAGCGCCGGGCGTGCTACGCTATGAAAAGACTGAGA 180 ***** * * *** ** ****** ***** * **** ***** ** * * ** * consensus_766#0 AAGAATACCCGGGGA-ATTTCGTTACA-ACGAATATGAA---GTAGAAAGGAGAGGAATA 182 consensus_766#1 ACGAATATCCAGGCATATTTTGATGCATACGAATATGATCGCATGGGAAAGGTGCAGACA 240 * ***** ** ** * **** * * ** ********** * * ** * * * consensus_766#0 AAATGGCAAAAGAGTACGATCTCGT-CATATTAGGCGGCGGCACAGGCGGATATGTAGCG 241 consensus_766#1 GAATGGCCAG-GAGTGCGACTCTGCGCATATTAGGCGGCGGGACAGGTGGCTATGTTACG 299 ****** * **** *** * *************** ***** ** ***** ** consensus_766#0 GCGATTCGTGCAGCACAATTAGGCTTAAAAACAGCCGTTGTCGAAAAAGGAAAGCTCGGC 301 consensus_766#1 GCGATTCGTGCGGCGCAATTAGGCTTAAAA-CAGCCGTTGTCGAAAAAGGAA-GCTCGGC 357 *********** ** *************** ********************* ******* consensus_766#0 GGAACGTGCTTGCATGCAGGCTGCATTCCGAGCAAAGCGTTGCTTCGCAGCGCAGAAGTG 361 consensus_766#1 GGAACGTGCTTGCACG-------------------------------------------- 373 ************** * consensus_766#0 TACGCGCAAACGAAAGAAAGCGAAAAGTTTGGCGTGCTTGCTAGCGATGTAAAACTAGAT 421 consensus_766#1 ------------------------------------------------------------ consensus_766#0 TTTCCGAAAGTGCAAGCGCGCANAAGAAGTATTGTTGAGCAATTACATANAGGCGTTCAG 481 consensus_766#1 ------------------------------------------------------------ consensus_766#0 CATTTAATGAAAAAAGGGAAAGTCGATGTATACGAAGGAACAGGCCGCATTTTAGGCCCT 541 consensus_766#1 ------------------------------------------------------------ consensus_766#0 TCGATT 547 consensus_766#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||