These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7661#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 466 fasta sequence [GTTTGAATGATGGTTCGACTGATGCATTTGGTGTTCTGGACGCTGACACTGGATCTAAATAGGTTTGTGAACGTGATCGGCGTTTACTTTCAGCTTCTTCGCGTAGAATAGCTTGTCCAATCCCTATGTGCTCAACAGAATGATCAATTGTATCAGGAATACCATCAAAGGAATAATCAATACTCAATGCTTCTTGACTTTCTAAATCATCAATATCGCCAGAAAACTGTGTACCACTTAAACGTGCTTGTTCTCTACGTCGTTGACGTCGTTCACGCATTAATTCCGCTAAAACAACACCAGAAGCAGGTGGCGCTGGCCAATCATAACGTTCAATTGGTCTTGGAGTACTTTTATCACGTTCTTGTCCAGCCGGTAAACAAGCTAATTTACGTGTTTCTACTGTGATATTACGATCATTTAATAAAATTGGACCAGATTGACTAGTATCGTCCCAACCCGNAGG] [+] EMBL CD161065 [GTTTGAATGATGGTTCGACTGATGCATTTGGTGTTCTGGACGCTGACACTGGATCTAAATAGGTTTGTGAACGTGATCGGCGTTTACTTTCAGCTTCTTCGCGTAGAATAGCTTGTCCAATCCCTATGTGCTCAACAGAATGATCAATTGTATCAGGAATACCATCAAAGGAATAATCAATACTCAATGCTTCTTGACTTTCTAAATCATCAATATCGCCAGAAAACTGTGTACCACTTAAACGTGCTTGTTCTCTACGTCGTTGACGTCGTTCACGCATTAATTCCGCTAAAACAACACCAGAAGCAGGTGGCGCTGGCCAATCATAACGTTCAATTGGTCTTGGAGTACTTTTATCACGTTCTTGTCCAGCCGGTAAACAAGCTAATTTACGTGTTTCTACTGTGATATTACGATCATTTAATAAAATTGGACCAGATTGACTAGTATCGTCCCAACCCGNAGG] [-] EMBL CD160977 [ TTTGAATGATGGTTCGACTGATGCATTTGGTGTTCTGGACGCTGACACTGGATCTAAATAGGTTTGTGAACGTGATCGGCGTTTACTTTCAGCTTCTTCGCGTAGAATAGCTTGTCCAGTCCCTATGTGCTCAACAGAATGATCAATTGTATCAGGAATACCATCAAAGGAATAATCAATACTCAATGCTTCTTGACTTTCTAAATCATCAATATCGCCAGAAAACTGTGTACCACTTAAACGTGCTTGTTCTCTACGTCGTTGACGTCGTTCACGCATTAATTCCGCTAAAACAACACCAGAAGCAGGTGGCGCTGGCCAATCATAACGTTCAATTGGTCTTGGAGTACTTTTATCACGTTCTTGTCCAGCCGGTAAACAAGCTAATTTACGTGTTTCTACTGTGATATTACGATCATTTAATAAAATTGGACCAGATTGACTA ] consensusID : consensus_7661#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 393 fasta sequence [GTCGTTCACGCATTAATTCCGCTAAAACAACACCAGAAGCAGGTGGCGCTGGCCAATCATAACGTTCAATTGGTCTTGGAGTACTTTTATCACGTTCTTGTCCAGCCGGTAAACAAGCTAATTTACGTGTTTCTACTGTGATATTACGATCATTTAATAAAATTGGACCAGATTGACTAATATCGTCCATATATGTTCGATGTGATTTCGATGTTAATTGACTGGTATGTTCACTATTAATGTTATCATTGTAATTATTATTATCATCAGTGGTATCAGATAAGATTCTGGCGATTTTTTTTGTTGATGTTGTTGTCGATAATGACAGTTTATCAGTTTTAAGTTTATCATGTAAATTGAAAGCTGACAATGCAAAAGGTTTGTTTAGAGAAC] [+] EMBL CD156427 [GTCGTTCACGCATTAATTCCGCTAAAACAACACCAGAAGCAGGTGGCGCTGGCCAATCATAACGTTCAATTGGTCTTGGAGTACTTTTATCACGTTCTTGTCCAGCCGGTAAACAAGCTAATTTACGTGTTTCTACTGTGATATTACGATCATTTAATAAAATTGGACCAGATTGACTAATATCGTCCATATATGTTCGATGTGATTTCGATGTTAATTGACTGGTATGTTCACTATTAATGTTATCATTGTAATTATTATTATCATCAGTGGTATCAGATAAGATTCTGGCGATTTTTTTTGTTGATGTTGTTGTCGATAATGACAGTTTATCAGTTTTAAGTTTATCATGTAAATTGAAAGCTGACAATGCAAAAGGTTTGTTT ] [-] EMBL CD156179 [ TCGTTCACGCATTAATTCCGCTAAAACAACACCAGAAGCAGGTGGCGCTGGCCAATCATAACGTTCAATTGGTCTTGGAGTACTTTTATCACGTTCTTGTCCAGCCGGTAAACAAGCTAATTTACGTGTTTCTACTGTGATATTACGATCATTTAATAAAATTGGACCAGATTGACTAATATCGTCCATATATGTTCGATGTGATTTCGATGTTAATTGACTGGTATGTTCACTATTAATGTTATCATTGTAATTATTATTATCATCAGTGGTATCAGATAAGATTCTGGCGATTTTTTTTGTTGATGTTGTTGTCGATAATGACAGTTTATCAGTTTTAAGTTTATCATGTAAATTGAAAGCTGACAATGCAAAAGGTTTGTTTAGAGAAC] [-] EMBL CD156275 [ GAATGGTATGTTCAATATTAATGTTATCATTGTAGTTATTATTATCATCAGTGGTATCAGATAAGATTATGACAATTTTTTTTGTTGATGTTGTTGTATATAATGACAGTTTATCAGTTTTAAGTTTATCATGTAAATTGAAAGTTGACAATGCAAAAGGTTTGTTTAta ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7661#0 GTTTGAATGATGGTTCGACTGATGCATTTGGTGTTCTGGACGCTGACACTGGATCTAAAT 60 consensus_7661#1 ---------------------GTCGTTCACGCATTAATTCCGCTAAAACAACACC---AG 36 * * * ** **** * ** * * * consensus_7661#0 AGGTTTGTGAACGTGATCGGCGTTTACTTTCAGCTTCTTCGCGTAGAATAGCTTGTCCAA 120 consensus_7661#1 AAGCAGGTGGCGCTGGCCAATCATAACGTTCAATTGGT---CTTGGAGTACTTTTATCAC 93 * * *** ** * * ** **** * * * * ** ** ** ** consensus_7661#0 TCCCTATGTGCTCAACAGAATGATCAATTGTATCAGGAATACCATCAAAGGAATAATCAA 180 consensus_7661#1 GTTCT---TGTCCAGCCGGTAAACAAGCTAATTTACGTGTTTCTACTGTGATATTACGAT 150 ** ** ** * * * * * * * * * * * * ** * * consensus_7661#0 TACTCAATGCTTCTTGACTTTCTAAATCATCAATATCGCCAGAAAACTGTGTACCACTTA 240 consensus_7661#1 CATTTAATAAAATTGGAC---CAGATTGACTAATATCGTC---------CATATATGTTC 198 * * *** * *** * * * * ******* * ** ** consensus_7661#0 AACGTGCTTGTTCTCTACGTCGTTGACGTCGTTCACGCATTAATTCCGCTAAAACAACAC 300 consensus_7661#1 GATGTGATT----TCGATGTTAATTGACTGGTATGTTCACTATTAATGTTAT-----CAT 249 * *** ** ** * ** * * ** ** ** * * ** ** consensus_7661#0 CAGAAGCAGGTGGCGCTGGCCAATCATAACGTTCAATTGGTCTTGGAGTACTTTTATCAC 360 consensus_7661#1 TGTAATTA--TTATTATCATCAGTGGTATCAGATAA--GATTCTGGCGATTTTTTTTGTT 305 ** * * * ** * ** * ** * * *** * **** * consensus_7661#0 GTTCTTGTCCAGCCGGTAAACAAGCTAATTTACGTGTTTCTACTGTGATATTACGATCAT 420 consensus_7661#1 GATGTTGTT--GTCGATA---ATGACAGTTTATCAGTTTTAAGTTTATCATGTAAATTGA 360 * * **** * ** ** * * * **** **** * * * ** ** consensus_7661#0 TTAATAAAATTGGACCAGATTGACTAGTATCGTCCCAACCCGNAGG 466 consensus_7661#1 AAGCTGACAATGCAAAAGGTTTGTTTAGAGAAC------------- 393 * * * ** * ** ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||