These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7677#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 477 fasta sequence [TTATTCATTGTGTTCTATTTGTTTTATTCAATTAAATCTTTTTCTTTTTGGGTTTGCTTTTTATAAACAAGATACACGCTGAGACATAGTAAACAACAACAAAAACATGGAAACAAATCAATTTACACAGTCAAATTATATGATTTTCTTCTTTTAGG-TTATTGTTTATTTGTTACTTACTTATGTATCGGTCGTGTAATGCTATTATTATTACTATTATTGTGTGTGTATGT--GCGTGTATGTGTGTGTGGTAACCCACCAACCCACCATTTTGTTGCATTGTCCATTTTCCCTATATACTATTTATAGAGGATATACTTATCTTTTTTTCCTG-TTTTTTTGTTCGTTTTTCTATATAATGAATGATTGTGTGATATGGATATGATTATTATTATTGTTATCATTAGTAATAATGTGTTAATGATAGTCTTATATATTTTACATAAATATATACTCCATTCACTTACATGTAATGTA] [+] EMBL CD196873 [TTATTCATTGTGTTCTATTTGTTTTATTCAATTAAATCTTTTTCTTTTTGGGTTTGCTTTTTATAAACAAGATACACGCTGAGACATAGTAAACAACAACAAAAACATGGAAACAAATCAATTTACACAGTCAAATTATATGATTTTCTTCTTTTAGG TTATTGTTTATTTGTTACTTACTTATGTATCGGTCGTGTAATGCTATTATTATTACTATTATTGTGTGTGTATGT GCGTGTATGTGTGTGTGGTTACCCACCAACCCACCATTTTGTTGCATTGTCCATTTTCCCTATATACTATTTATAGAGGATATACTTATCTTTTTTTCCTGTTTTTTTTGTTCGTTTTTCTATATAATGAATGATTGTGTGATATGGATATGATTATTATTATTGTTATCATTAGTAATAATGTGTTAATGATAGTCTTATATATTTTACATTAAT ] [-] EMBL CD196862 [ TATTCATTGTGTTCTATTTGTTTTATTCAATTAAATCTTTTTCTTTTTGGGTTTGCTTTTTATAAACAAGATACACGCTGAGACGTAGTAAACAACAACAAAAACATGGAAACAAATCAATTTACACAGTCAAATTATATGATTTTCTTCTTTTAGG TTATTGTTTATTTGTTACTTACTTATGTATCGGTCGTGTAATGCTATTATTATTACTATTATTGTGTGTGTATGTGCGCGCGCGTGTGTGTGTGGTAACCCACCAACCCACCATTT ] [-] EMBL CD196851 [ AATTAAATCTTTTTCTTTTTGGGTTTGCTTTTTATAAACAAGATACACGCTGAGACATAGTAAACAACAACAAAAACATGGAAACAAATCAATTTACACAGTCAAATTATATGATTTTCTTCTTTTAGG TTATTGTTTATTTGTTACTTACTTATGTATCGGTCGTGTAATGCTATTATTATTACTATTATTGTGTGTGTATGTGCGCGCGCGTGTGTGTGTGGTAACCCACCAACCCACCATTTTGTTGCATTGTCCATTTTCCCTATATACTATTTGTAGAGGATATACTTATC TTTCCTG TTTTTTTGTTCGTTTTTCTATATAATGAATGATTGTGTGATATGGATATGATTATTATTATTATTATCATTAGTAATAATGTGTTAATGATAGTCTTATATATTTTACATAAATATATACTCCATTCACTTACATGTAATGTA] [-] EMBL CD196822 [ AATCTTTTTCCTTTTGGGTTTGCTTTTTATAAACAAGATACACGCTGAGACATAGTAAACAACAACAAAAACATGGAAACAAATCAATTCACACAGTCAAATAATATGATTTTCTTC TTTAGGTTTATTGTTAATTTGTTACTTACTTATGTATCGGTCGTGTAATGCTATTATTATTACTATTATTGTGTGTGTATGT GCGTGTATGTGTGTGTGGTAACCCACCAACCCACCATTTTGTTGCATTGTCCATTTTCCCTATATACTATTTATAGAGGATATACTTATCTTTTTTTCCTG TTTTTTTGTTCGTTTTTCTATATAATGAATGATTGTGTGATATGGATATGATTATTATTATTGTTATCATTAGTAATAATGTGTTAATGATAGTCTTATATATTTTACATAAATATATACTCCATTCACTTACATGTAATGTA] consensusID : consensus_7677#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 117 fasta sequence [ATAGGGAAAATGGACAATGCAACAAAATGGTGGGTTGGTGGGTTACCACACACACACGCGCGCGCACATACACACACAATAATAATAATAATAATATATTTTGACGATCGTATCATC] [+] EMBL CD156122 [ATAGGGAAAATGGACAATGCAACAAAATGGTGGGTTGGTGGGTTACCACACACACACGCGCGCGCACATACACACACAATAATAATAATAATAATATATTTTGACGATCGTATCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7677#0 TTATTCATTGTGTTCTATTTGTTTTATTCAATTAAATCTTTTTCTTTTTGGGTTTGCTTT 60 consensus_7677#1 ---------ATAGGGAAAATGGACAATGCAACAAAATGGT---------GGGTTGGTGGG 42 * * ** ** *** **** * ***** * consensus_7677#0 TTATAAACAAGATACACGCTGAGACATAGTAAACAACAACAAAAACATGGAAACAAATCA 120 consensus_7677#1 TTACCACACACACACGCGCGCGCACATA-CACACA-CAATAATAATA---ATAATAATAT 97 *** * * * ** *** ***** * *** *** ** ** * * * *** consensus_7677#0 ATTTACACAGTCAAATTATATGATTTTCTTCTTTTAGGTTATTGTTTATTTGTTACTTAC 180 consensus_7677#1 ATTTTGACGATCGTATCATC---------------------------------------- 117 **** ** ** ** ** consensus_7677#0 TTATGTATCGGTCGTGTAATGCTATTATTATTACTATTATTGTGTGTGTATGTGCGTGTA 240 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 TGTGTGTGTGGTAACCCACCAACCCACCATTTTGTTGCATTGTCCATTTTCCCTATATAC 300 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 TATTTATAGAGGATATACTTATCTTTTTTTCCTGTTTTTTTGTTCGTTTTTCTATATAAT 360 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 GAATGATTGTGTGATATGGATATGATTATTATTATTGTTATCATTAGTAATAATGTGTTA 420 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 ATGATAGTCTTATATATTTTACATAAATATATACTCCATTCACTTACATGTAATGTA 477 consensus_7677#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||